305 Matching Annotations
  1. Feb 2021
  2. link.springer.com link.springer.com
    Outbreak of Central American born Shigella sonnei in two youth camps in Belgium in the summer of 2019
    1
    1. scibot 24 Feb 2021
      RRID:SCR_001876

      DOI: 10.1007/s10096-021-04164-y

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    link.springer.com/article/10.1007/s10096-021-04164-y
  3. elifesciences.org elifesciences.org
    Dyshomeostatic modulation of Ca2+-activated K+ channels in a human neuronal model of KCNQ2 encephalopathy
    1
    1. scibot 11 Feb 2021
      RRID:SCR_001876

      DOI: 10.7554/eLife.64434

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    elifesciences.org/articles/64434
  4. Dec 2020
  5. academic.oup.com academic.oup.com
    Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore
    1
    1. scibot 19 Dec 2020
      RRID:SCR_001876

      DOI: 10.1093/gigascience/giaa123

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    academic.oup.com/gigascience/article/9/12/giaa123/6034784
  6. academic.oup.com academic.oup.com
    Genome sequencing of deep-sea hydrothermal vent snails reveals adaptions to extreme environments
    1
    1. scibot 19 Dec 2020
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      DOI: 10.1093/gigascience/giaa139

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    academic.oup.com/gigascience/article/9/12/giaa139/6034786
  7. academic.oup.com academic.oup.com
    Chromosomal genome of Triplophysa bleekeri provides insights into its evolution and environmental adaptation
    1
    1. scibot 07 Dec 2020
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      DOI: 10.1093/gigascience/giaa132

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    academic.oup.com/gigascience/article/9/11/giaa132/5999722
  8. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Turnip mosaic virus in oilseed rape activates networks of sRNA-mediated interactions between viral and host genomes
    1
    1. scibot 07 Dec 2020
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      DOI: 10.1038/s42003-020-01425-y

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    pubmed.ncbi.nlm.nih.gov/33230160/
  9. Nov 2020
  10. www.sciencedirect.com www.sciencedirect.com
    Two Aldehyde Clearance Systems Are Essential to Prevent Lethal Formaldehyde Accumulation in Mice and Humans
    1
    1. scibot 07 Nov 2020
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      DOI: 10.1016/j.molcel.2020.10.012

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    sciencedirect.com/science/article/pii/S109727652030719X
  11. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    A molecular map of lung neuroendocrine neoplasms
    1
    1. scibot 03 Nov 2020
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      DOI: 10.1093/gigascience/giaa112

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    pubmed.ncbi.nlm.nih.gov/33124659/
  12. Oct 2020
  13. academic.oup.com academic.oup.com
    DNA Methylation Profiling and Genomic Analysis in 20 Children with Short Stature Who Were Born Small for Gestational Age
    1
    1. scibot 29 Oct 2020
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      DOI: 10.1210/clinem/dgaa465

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    academic.oup.com/jcem/article/105/12/dgaa465/5873625
  14. www.cell.com www.cell.com
    Fatal Perinatal Mitochondrial Cardiac Failure Caused by Recurrent De Novo Duplications in the ATAD3 Locus
    1
    1. scibot 16 Oct 2020
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      DOI: 10.1016/j.medj.2020.06.004

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    cell.com/med/fulltext/S2666-6340(20)30009-X
  15. Sep 2020
  16. academic.oup.com academic.oup.com
    Genomic analyses reveal distinct genetic architectures and selective pressures in buffaloes
    1
    1. scibot 26 Sep 2020
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      DOI: 10.1093/gigascience/giz166

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    academic.oup.com/gigascience/article/9/2/giz166/5743106
  17. elifesciences.org elifesciences.org
    Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa
    1
    1. scibot 26 Sep 2020
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      DOI: 10.7554/eLife.29655

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    elifesciences.org/articles/29655
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of scavenger receptor B1 as the airway microfold cell receptor for Mycobacterium tuberculosis
    1
    1. scibot 23 Sep 2020
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      DOI: 10.7554/eLife.52551

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    ncbi.nlm.nih.gov/pmc/articles/PMC7065847/
  19. elifesciences.org elifesciences.org
    Aneuploidy as a cause of impaired chromatin silencing and mating-type specification in budding yeast
    1
    1. scibot 23 Sep 2020
      RRID:SCR_001876

      DOI: 10.7554/eLife.27991

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    elifesciences.org/articles/27991
  20. www.sciencedirect.com www.sciencedirect.com
    Senescence-Induced Vascular Remodeling Creates Therapeutic Vulnerabilities in Pancreas Cancer
    1
    1. scibot 17 Sep 2020
      RRID:SCR_001876

      DOI: 10.1016/j.cell.2020.03.008

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    sciencedirect.com/science/article/pii/S0092867420302701
  21. academic.oup.com academic.oup.com
    Introgression of Eastern Chinese and Southern Chinese haplotypes contributes to the improvement of fertility and immunity in European modern pigs
    1
    1. scibot 17 Sep 2020
      RRID:SCR_001876

      DOI: 10.1093/gigascience/giaa014

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    academic.oup.com/gigascience/article/9/3/giaa014/5788434
  22. academic.oup.com academic.oup.com
    Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats
    1
    1. scibot 17 Sep 2020
      RRID:SCR_001876

      DOI: 10.1093/gigascience/giaa059

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    academic.oup.com/gigascience/article/9/6/giaa059/5854408
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global genome diversity of the Leishmania donovani complex
    2
    1. scibot 16 Sep 2020
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      DOI: 10.7554/eLife.51243

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    2. scibot 04 Sep 2020
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      DOI: 10.7554/eLife.51243

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    ncbi.nlm.nih.gov/pmc/articles/PMC7105377/
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Expandable and reversible copy number amplification drives rapid adaptation to antifungal drugs
    1
    1. scibot 14 Sep 2020
      RRID:SCR_001876

      DOI: 10.7554/eLife.58349

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    ncbi.nlm.nih.gov/pmc/articles/PMC7371428/
  25. elifesciences.org elifesciences.org
    Renal medullary carcinomas depend upon SMARCB1 loss and are sensitive to proteasome inhibition
    1
    1. scibot 14 Sep 2020
      RRID:SCR_001876

      DOI: 10.7554/eLife.44161

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    elifesciences.org/articles/44161
  26. www.sciencedirect.com www.sciencedirect.com
    C/EBPα and GATA-2 Mutations Induce Bilineage Acute Erythroid Leukemia through Transformation of a Neomorphic Neutrophil-Erythroid Progenitor
    1
    1. scibot 13 Sep 2020
      RRID:SCR_001876

      DOI: 10.1016/j.ccell.2020.03.022

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    sciencedirect.com/science/article/pii/S1535610820301628
  27. www.frontiersin.org www.frontiersin.org
    A Preliminary Study to Investigate the Genetic Background of Longevity Based on Whole-Genome Sequence Data of Two Methuselah Dogs
    1
    1. scibot 12 Sep 2020
      RRID:SCR_001876

      DOI: 10.3389/fgene.2020.00315

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    frontiersin.org/article/10.3389/fgene.2020.00315/full
  28. www.sciencedirect.com www.sciencedirect.com
    Ancient Bacterial Genomes Reveal a High Diversity of Treponema pallidum Strains in Early Modern Europe
    1
    1. scibot 11 Sep 2020
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      DOI: 10.1016/j.cub.2020.07.058

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    sciencedirect.com/science/article/pii/S0960982220310836
  29. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Novel and de novo point and large microdeletion mutation in PRRT2‐related epilepsy
    1
    1. scibot 10 Sep 2020
      RRID:SCR_001876

      DOI: 10.1002/brb3.1597

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    onlinelibrary.wiley.com/doi/10.1002/brb3.1597
  30. academic.oup.com academic.oup.com
    Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle
    1
    1. scibot 05 Sep 2020
      RRID:SCR_001876

      DOI: 10.1093/gigascience/giaa029

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    academic.oup.com/gigascience/article/9/4/giaa029/5815405
  31. Aug 2020
  32. www.sciencedirect.com www.sciencedirect.com
    Human Herpesvirus 6 Detection in Alzheimer’s Disease Cases and Controls across Multiple Cohorts
    1
    1. scibot 21 Aug 2020
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      DOI: 10.1016/j.neuron.2019.12.031

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    sciencedirect.com/science/article/pii/S0896627319310979
  33. Jan 2020
  34. www.sciencedirect.com www.sciencedirect.com
    GCNA Interacts with Spartan and Topoisomerase II to Regulate Genome Stability
    1
    1. scibot 13 Jan 2020
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      DOI: 10.1016/j.devcel.2019.11.006

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    sciencedirect.com/science/article/pii/S1534580719309372
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)
    1
    1. scibot 13 Jan 2020
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      DOI: 10.1093/gigascience/giz059

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    ncbi.nlm.nih.gov/pmc/articles/PMC6528745/
  36. elifesciences.org elifesciences.org
    Large, three-generation human families reveal post-zygotic mosaicism and variability in germline mutation accumulation
    1
    1. scibot 13 Jan 2020
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      DOI: 10.7554/eLife.46922

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    elifesciences.org/articles/46922
  37. academic.oup.com academic.oup.com
    Genome and population sequencing of a chromosome-level genome assembly of the Chinese tapertail anchovy ( Coilia nasus ) provides novel insights into migratory adaptation
    1
    1. scibot 13 Jan 2020
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      DOI: 10.1093/gigascience/giz157

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    academic.oup.com/gigascience/article/9/1/giz157/5694102
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome plasticity in Candida albicans is driven by long repeat sequences
    1
    1. scibot 13 Jan 2020
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      DOI: 10.7554/eLife.45954

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    ncbi.nlm.nih.gov/pmc/articles/PMC6591007/
  39. academic.oup.com academic.oup.com
    Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
    1
    1. scibot 13 Jan 2020
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      DOI: 10.1093/gigascience/giz104

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    academic.oup.com/gigascience/article/8/8/giz104/5552683
  40. www.sciencedirect.com www.sciencedirect.com
    A Patient-Derived Glioblastoma Organoid Model and Biobank Recapitulates Inter- and Intra-tumoral Heterogeneity
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      DOI: 10.1016/j.cell.2019.11.036

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    sciencedirect.com/science/article/pii/S0092867419313212
  41. www.sciencedirect.com www.sciencedirect.com
    Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF
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      DOI: 10.1016/j.celrep.2019.10.106

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    sciencedirect.com/science/article/pii/S2211124719314391
  42. www.sciencedirect.com www.sciencedirect.com
    Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks
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      DOI: 10.1016/j.cell.2019.07.015

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    sciencedirect.com/science/article/pii/S0092867419307809
  43. academic.oup.com academic.oup.com
    Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome
    1
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      DOI: 10.1093/gigascience/giz115

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    academic.oup.com/gigascience/article/8/10/giz115/5579996
  44. www.sciencedirect.com www.sciencedirect.com
    Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma
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      DOI: 10.1016/j.cell.2019.08.052

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    sciencedirect.com/science/article/pii/S0092867419310037
  45. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Genetic, epigenetic and genomic effects on variation of gene expression among grape varieties
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    1. scibot 13 Jan 2020
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      DOI: 10.1111/tpj.14370

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    onlinelibrary.wiley.com/doi/full/10.1111/tpj.14370
  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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      DOI: 10.7554/eLife.44161

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    ncbi.nlm.nih.gov/pmc/articles/PMC6436895/
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat
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    1. scibot 13 Jan 2020
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      DOI: 10.1093/gigascience/giz018

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    ncbi.nlm.nih.gov/pmc/articles/PMC6461119/
  48. europepmc.org europepmc.org
    Untitled document
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    Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise
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    Linking genetic, metabolic, and phenotypic diversity among Saccharomyces cerevisiae strains using multi-omics associations
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    The Polyploid State Plays a Tumor-Suppressive Role in the Liver
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    Genetic Modulation of RNA Splicing with a CRISPR-Guided Cytidine Deaminase
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    Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups
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    Integrated Genomic Analysis of Hürthle Cell Cancer Reveals Oncogenic Drivers, Recurrent Mitochondrial Mutations, and Unique Chromosomal Landscapes
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    Urea Cycle Dysregulation Generates Clinically Relevant Genomic and Biochemical Signatures
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    The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes
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    Biallelic Mutations in MYORG Cause Autosomal Recessive Primary Familial Brain Calcification
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    Germline Genetic IKZF1 Variation and Predisposition to Childhood Acute Lymphoblastic Leukemia
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    Improved de novo genome assembly and analysis of the Chinese cucurbit Siraitia grosvenorii, also known as monk fruit or luo-han-guo
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    Bottlenose Dolphins Retain Individual Vocal Labels in Multi-level Alliances
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    Evidence of evolutionary history and selective sweeps in the genome of Meishan pig reveals its genetic and phenotypic characterization
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    Population genomic data reveal genes related to important traits of quail
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    Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly
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    Whole-genome resequencing reveals signatures of selection and timing of duck domestication
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    Whole-genome sequences of 89 Chinese sheep suggest role of RXFP2 in the development of unique horn phenotype as response to semi-feralization
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    Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing
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    SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data.
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    Explosive mutation accumulation triggered by heterozygous human Pol ε proofreading-deficiency is driven by suppression of mismatch repair
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    Genomic Analysis of Demographic History and Ecological Niche Modeling in the Endangered Sumatran Rhinoceros Dicerorhinus sumatrensis
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    Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing
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    Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma
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    CNVcaller: highly efficient and widely applicable software for detecting copy number variations in large populations
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    The Stone Age Plague and Its Persistence in Eurasia
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      RRID:SCR_001876
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    europepmc.org/articles/PMC5628015/
  93. Nov 2017
  94. academic.oup.com academic.oup.com
    Population-wide sampling of retrotransposon insertion polymorphisms using deep sequencing and efficient detection
    1
    1. scibot 08 Nov 2017
      RRID:SCR_001876

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      (GATK, RRID:SCR_001876)

      SciCrunch record: RRID:SCR_001876

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      RRID:SCR_001876
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    academic.oup.com/gigascience/article/6/9/1/4056271/Population-wide-sampling-of-retrotransposon
  95. academic.oup.com academic.oup.com
    Untitled document
    1
    1. scibot 08 Nov 2017
      RRID:SCR_001876

      Curator: @patriciaelyse_

      Resource used:

      (GATK, RRID:SCR_001876)

      SciCrunch record: RRID:SCR_001876

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      RRID:SCR_001876 RRIDCUR:Validated
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    academic.oup.com/gigascience/article/6/9/1/4077042/The-draft-genome-sequence-of-a-desert-tree-Populus
  96. elifesciences.org elifesciences.org
    Genetic identification of a common collagen disease in Puerto Ricans via identity-by-descent mapping in a health system
    1
    1. scibot 08 Nov 2017
      RRID:SCR_001876

      Curator: @kaitlinsung

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      (GATK, RRID:SCR_001876)

      SciCrunch record: RRID:SCR_001876

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      RRID:SCR_001876 RRIDCUR:Validated
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    elifesciences.org/articles/25060
  97. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
    2
    1. scibot 08 Nov 2017
      RRID:SCR_001876

      Curator: @patriciaelyse_

      Resource used:

      (GATK, RRID:SCR_001876)

      SciCrunch record: RRID:SCR_001876

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:SCR_001876 RRIDCUR:Validated
    2. scibot 08 Nov 2017
      RRID:SCR_001876

      Curator: @patriciaelyse_

      Resource used:

      (GATK, RRID:SCR_001876)

      SciCrunch record: RRID:SCR_001876

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      RRID:SCR_001876 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC5570000/
  98. academic.oup.com academic.oup.com
    An expanded mammal mitogenome dataset from Southeast Asia
    1
    1. scibot 08 Nov 2017
      RRID:SCR_001876

      Curator: @patriciaelyse_

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      (GATK, RRID:SCR_001876)

      SciCrunch record: RRID:SCR_001876

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      RRID:SCR_001876 RRIDCUR:Validated
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    academic.oup.com/gigascience/article/6/8/1/3958782/An-expanded-mammal-mitogenome-dataset-from
  99. www.sciencedirect.com www.sciencedirect.com
    Functional Selectivity in Cytokine Signaling Revealed Through a Pathogenic EPO Mutation
    1
    1. scibot 08 Nov 2017
      GATK

      Curator: @Jmenke

      Resource used:

      (GATK, RRID:SCR_001876)

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      RRID:SCR_001876 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S0092867417302416
  100. academic.oup.com academic.oup.com
    16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model
    1
    1. scibot 08 Nov 2017
      SCR_001876

      Curator: @chewbeccax

      Resource used:

      (GATK, RRID:SCR_001876)

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    academic.oup.com/gigascience/article-lookup/doi/10.1093/gigascience/gix045
  101. www.sciencedirect.com www.sciencedirect.com
    The Discovery of Wild Date Palms in Oman Reveals a Complex Domestication History Involving Centers in the Middle East and Africa
    1
    1. scibot 08 Nov 2017
      SCR_001876

      Curator: @chewbeccax

      Resource used:

      (GATK, RRID:SCR_001876)

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    sciencedirect.com/science/article/pii/S0960982217307820
  102. www.sciencedirect.com www.sciencedirect.com
    Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells
    1
    1. scibot 08 Nov 2017
      GATK

      Curator: @Zeljana_Babic

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      (GATK, RRID:SCR_001876)

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    sciencedirect.com/science/article/pii/S1934590917300802
  103. www.cell.com www.cell.com
    Mutation of the Human Circadian Clock Gene CRY1 in Familial Delayed Sleep Phase Disorder
    1
    1. scibot 08 Nov 2017
      GATK (Genome Analysis Toolkit version 3.2-2)

      Curator: @Zeljana_Babic

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      (GATK, RRID:SCR_001876)

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    cell.com/action/showMethods
  104. www.sciencedirect.com www.sciencedirect.com
    Mutation of the Human Circadian Clock Gene CRY1 in Familial Delayed Sleep Phase Disorder
    1
    1. scibot 08 Nov 2017
      GATK

      Curator: @gabimpine

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      (GATK, RRID:SCR_001876)

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      RRID:SCR_001876 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S009286741730346X
  105. www.sciencedirect.com www.sciencedirect.com
    Histone Acetylome-wide Association Study of Autism Spectrum Disorder
    1
    1. scibot 08 Nov 2017
      GATK

      Curator: @chewbeccax

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      (GATK, RRID:SCR_001876)

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      RRID:SCR_001876 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S0092867416314519
  106. elifesciences.org elifesciences.org
    Epigenetic regulation of lateralized fetal spinal gene expression underlies hemispheric asymmetries
    1
    1. scibot 08 Nov 2017
      SCR_001876

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      (GATK, RRID:SCR_001876)

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    elifesciences.org/articles/22784
  107. www.sciencedirect.com www.sciencedirect.com
    A Biobank of Breast Cancer Explants with Preserved Intra-tumor Heterogeneity to Screen Anticancer Compounds
    1
    1. scibot 08 Nov 2017
      GATK

      Curator: @gabimpine

      Resource used:

      (GATK, RRID:SCR_001876)

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    sciencedirect.com/science/article/pii/S0092867416311382
  108. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A molecular portrait of maternal sepsis from Byzantine Troy
    1
    1. scibot 08 Nov 2017
      SCR_001876

      Curator: @gabimpine

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      (GATK, RRID:SCR_001876)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5224923/
  109. www.sciencedirect.com www.sciencedirect.com
    Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts
    1
    1. scibot 08 Nov 2017
      SCR_001876

      Curator: @chewbeccax

      Resource used:

      (GATK, RRID:SCR_001876)

      SciCrunch record: RRID:SCR_001876

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    sciencedirect.com/science/article/pii/S0092867416310716
  110. www.sciencedirect.com www.sciencedirect.com
    Loss-of-Function Mutations in ELMO2 Cause Intraosseous Vascular Malformation by Impeding RAC1 Signaling
    1
    1. scibot 08 Nov 2017
      Genome Analysis Toolkit

      Curator: @gabimpine

      Resource used:

      (GATK, RRID:SCR_001876)

      SciCrunch record: RRID:SCR_001876

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      RRID:SCR_001876 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S0002929716302105
  111. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Heterozygous Loss-of-Function SEC61A1 Mutations Cause Autosomal-Dominant Tubulo-Interstitial and Glomerulocystic Kidney Disease with Anemia
    1
    1. scibot 08 Nov 2017
      GATK (3.3)

      Curator: @gabimpine

      Resource used:

      (GATK, RRID:SCR_001876)

      SciCrunch record: RRID:SCR_001876

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    ncbi.nlm.nih.gov/pmc/articles/PMC5005467/
  112. www.sciencedirect.com www.sciencedirect.com
    Whole-Genome Sequencing Reveals Diverse Models of Structural Variations in Esophageal Squamous Cell Carcinoma
    1
    1. scibot 08 Nov 2017
      Genome Analysis Toolkit

      Curator: @jcabotaj

      Resource used:

      (GATK, RRID:SCR_001876)

      SciCrunch record: RRID:SCR_001876

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      RRID:SCR_001876 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S000292971500508X