518 Matching Annotations
  1. Jun 2023
  2. www.biorxiv.org www.biorxiv.org
    A prognostic matrix code defines functional glioblastoma phenotypes and niches
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    1. scibot 16 Jun 2023
      RRID:SCR_014601

      DOI: 10.1101/2023.06.06.543903

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    biorxiv.org/content/10.1101/2023.06.06.543903v1
  3. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Amoeba species colonizing the gills of rainbow trout (Oncorhynchus mykiss) in Swiss aquaculture
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    1. scibot 15 Jun 2023
      RRID:SCR_014601

      DOI: 10.1111/jfd.13819

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    onlinelibrary.wiley.com/doi/10.1111/jfd.13819
  4. faseb.onlinelibrary.wiley.com faseb.onlinelibrary.wiley.com
    Sortilin acts as an endocytic receptor for α-synuclein fibril
    1
    1. scibot 08 Jun 2023
      RRID:SCR_014601

      DOI: 10.1096/fj.202201605RR

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    faseb.onlinelibrary.wiley.com/doi/10.1096/fj.202201605RR
  5. aacrjournals.org aacrjournals.org
    Enhanced glutaminolysis drives hypoxia-induced chemoresistance in pancreatic cancer
    1
    1. scibot 03 Jun 2023
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      DOI: 10.1158/0008-5472.CAN-22-2045

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    aacrjournals.org/cancerres/article/83/5/735/716680/Enhanced-Glutaminolysis-Drives-Hypoxia-Induced
  6. www.biorxiv.org www.biorxiv.org
    Tyramine promotes colon cancer risk and development by inducing DNA damage and inflammation
    1
    1. scibot 01 Jun 2023
      RRID:SCR_014601

      DOI: 10.1101/2023.05.25.542254

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    biorxiv.org/content/10.1101/2023.05.25.542254v1
  7. May 2023
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evolution of Resistance to Irinotecan in Cancer Cells Involves Generation of Topoisomerase-Guided Mutations in Non-Coding Genome That Reduce the Chances of DNA Breaks
    1
    1. scibot 31 May 2023
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      DOI: 10.3390/ijms24108717

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    ncbi.nlm.nih.gov/pmc/articles/PMC10218574/
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Human gasdermin D and MLKL disrupt mitochondria, endocytic traffic and TORC1 signalling in budding yeast
    1
    1. scibot 25 May 2023
      RRID:SCR_014601

      DOI: 10.1098/rsob.220366

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    ncbi.nlm.nih.gov/pmc/articles/PMC10205182/
  10. www.sciencedirect.com www.sciencedirect.com
    Transcriptional dynamics of delaminating neuroblasts in the mouse otic vesicle
    1
    1. scibot 25 May 2023
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      DOI: 10.1016/j.celrep.2023.112545

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    sciencedirect.com/science/article/pii/S2211124723005569
  11. www.sciencedirect.com www.sciencedirect.com
    Immune microenvironment remodeling after radiation of a progressing brain metastasis
    1
    1. scibot 20 May 2023
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      DOI: 10.1016/j.xcrm.2023.101054

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    sciencedirect.com/science/article/pii/S2666379123001684
  12. 52.53.155.43 52.53.155.43
    Intrinsic tumor resistance to CAR T cells is a dynamic transcriptional state that is exploitable with low-dose radiation
    1
    1. scibot 19 May 2023
      RRID:SCR_014601

      DOI: 10.1182/bloodadvances.2022009543

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    52.53.155.43/c3edf1bcbe114757202a2e57dfb535e151ecf522/RRID8-html.html
  13. www.sciencedirect.com www.sciencedirect.com
    Modeling breast cancer proliferation, drug synergies, and alternating therapies
    2
    1. scibot 19 May 2023
      RRID:SCR_014601

      DOI: 10.1016/j.isci.2023.106714

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    2. scibot 19 May 2023
      RRID:SCR_014601

      DOI: 10.1016/j.isci.2023.106714

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    sciencedirect.com/science/article/pii/S2589004223007915
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Synthetic miR-21 decoy circularized by tRNA splicing mechanism inhibited tumorigenesis in glioblastoma in vitro and in vivo models
    1
    1. scibot 16 May 2023
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      DOI: 10.1016/j.omtn.2023.04.001

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    ncbi.nlm.nih.gov/pmc/articles/PMC10173299/
  15. www.sciencedirect.com www.sciencedirect.com
    Bat ASC2 suppresses inflammasomes and ameliorates inflammatory diseases
    1
    1. scibot 12 May 2023
      RRID: SCR_014601

      DOI: 10.1016/j.cell.2023.03.036

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    sciencedirect.com/science/article/pii/S0092867423003331
  16. www.sciencedirect.com www.sciencedirect.com
    Vaginal epithelial dysfunction is mediated by the microbiome, metabolome, and mTOR signaling
    1
    1. scibot 11 May 2023
      SCR_014601

      DOI: 10.1016/j.celrep.2023.112474

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    sciencedirect.com/science/article/pii/S2211124723004850
  17. onlinelibrary.wiley.com onlinelibrary.wiley.com
    KMT2D Deficiency Promotes Myeloid Leukemias which Is Vulnerable to Ribosome Biogenesis Inhibition
    1
    1. scibot 10 May 2023
      RRID:SCR_014601

      DOI: 10.1002/advs.202206098

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    onlinelibrary.wiley.com/doi/10.1002/advs.202206098
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Ultra High-plex Spatial Proteogenomic Investigation of Giant Cell Glioblastoma Multiforme Immune Infiltrates Reveals Distinct Protein and RNA Expression Profiles
    1
    1. scibot 06 May 2023
      RRID:SCR_014601

      DOI: 10.1158/2767-9764.CRC-22-0396

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    ncbi.nlm.nih.gov/pmc/articles/PMC10155752/
  19. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Effects of human disturbance on risk-taking behavior in painted turtles
    1
    1. scibot 04 May 2023
      RRID:SCR_014601

      DOI: 10.1111/eth.13377

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    onlinelibrary.wiley.com/doi/10.1111/eth.13377
  20. www.nature.com www.nature.com
    Local genetic correlations exist among neurodegenerative and neuropsychiatric diseases
    1
    1. scibot 02 May 2023
      RRID:SCR_014601

      DOI: 10.1038/s41531-023-00504-1

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    nature.com/articles/s41531-023-00504-1
  21. Apr 2023
  22. onlinelibrary.wiley.com onlinelibrary.wiley.com
    The microbial community dynamics of cocaine sensitization in two behaviorally divergent strains of collaborative cross mice
    1
    1. scibot 29 Apr 2023
      RRID:SCR_014601

      DOI: 10.1111/gbb.12845

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    onlinelibrary.wiley.com/doi/10.1111/gbb.12845
  23. www.sciencedirect.com www.sciencedirect.com
    Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population
    1
    1. scibot 29 Apr 2023
      RRID:SCR_014601

      DOI: 10.1016/j.cub.2023.04.011

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    sciencedirect.com/science/article/pii/S0960982223004591
  24. www.sciencedirect.com www.sciencedirect.com
    Comprehensive epigenomic profiling reveals the extent of disease-specific chromatin states and informs target discovery in ankylosing spondylitis
    1
    1. scibot 26 Apr 2023
      RRID:SCR_014601

      DOI: 10.1016/j.xgen.2023.100306

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    sciencedirect.com/science/article/pii/S2666979X23000721
  25. www.sciencedirect.com www.sciencedirect.com
    Systematic comparison of multi-omics survival models reveals a widespread lack of noise resistance
    1
    1. scibot 26 Apr 2023
      RRID:SCR_014601

      DOI: 10.1016/j.crmeth.2023.100461

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    sciencedirect.com/science/article/pii/S2667237523000802
  26. www.biorxiv.org www.biorxiv.org
    Brain and blood single-cell transcriptomics in acute and subacute phases after experimental stroke
    1
    1. scibot 20 Apr 2023
      RRID:SCR_014601

      DOI: 10.1101/2023.03.31.535150

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    biorxiv.org/content/10.1101/2023.03.31.535150v1
  27. 52.53.155.43 52.53.155.43
    Active maintenance of CD8+ T cell naïvety through regulation of global genome architecture
    1
    1. scibot 12 Apr 2023
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      DOI: 10.1101/2023.02.26.530139

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    52.53.155.43/466ebedd8046ca94e96cd8cd2fcd3a0cdd9678e2/2023.02.26.530139v1.full-html.html
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Effects of Eimeria acervulina infection on the luminal and mucosal microbiota of the duodenum and jejunum in broiler chickens
    1
    1. scibot 08 Apr 2023
      RRID:SCR_014601

      DOI: 10.3389/fmicb.2023.1147579

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    ncbi.nlm.nih.gov/pmc/articles/PMC10067739/
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Molecular characterization of epithelial-mesenchymal transition and medical treatment related-genes in non-functioning pituitary neuroendocrine tumors
    1
    1. scibot 07 Apr 2023
      SCR_014601

      DOI: 10.3389/fendo.2023.1129213

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    ncbi.nlm.nih.gov/pmc/articles/PMC10074986/
  30. link.springer.com link.springer.com
    Comprehensive proteomics and platform validation of urinary biomarkers for bladder cancer diagnosis and staging
    1
    1. scibot 06 Apr 2023
      RRID:SCR_014601

      DOI: 10.1186/s12916-023-02813-x

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    link.springer.com/article/10.1186/s12916-023-02813-x
  31. Mar 2023
  32. www.biorxiv.org www.biorxiv.org
    From Policy to Practice: Tracking an Open Science Funding Initiative
    1
    1. scibot 31 Mar 2023
      RRID:SCR_014601

      DOI: 10.1101/2023.02.27.530238

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    biorxiv.org/content/10.1101/2023.02.27.530238v2
  33. link.springer.com link.springer.com
    Upregulation of TUBG1 expression promotes hepatocellular carcinoma development
    1
    1. scibot 31 Mar 2023
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      DOI: 10.1007/s12032-023-01966-2

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    link.springer.com/article/10.1007/s12032-023-01966-2
  34. europepmc.org europepmc.org
    Metagenomic analysis of coastal Kenya female Aedes aegypti mosquito ...
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    1. scibot 30 Mar 2023
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      DOI: 10.12688/wellcomeopenres.18868.1

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    2. scibot 30 Mar 2023
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      DOI: 10.12688/wellcomeopenres.18868.1

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    europepmc.org/article/ppr/ppr634883
  35. www.nature.com www.nature.com
    HOXB3 drives WNT-activation associated progression in castration-resistant prostate cancer
    1
    1. scibot 29 Mar 2023
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      DOI: 10.1038/s41419-023-05742-y

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    nature.com/articles/s41419-023-05742-y
  36. www.sciencedirect.com www.sciencedirect.com
    SUCNR1 signaling in adipocytes controls energy metabolism by modulating circadian clock and leptin expression
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    1. scibot 28 Mar 2023
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      DOI: 10.1016/j.cmet.2023.03.004

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    sciencedirect.com/science/article/pii/S1550413123000827
  37. link.springer.com link.springer.com
    Expression of down-regulated ERV LTR elements associates with immune activation in human small-cell lung cancers
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    1. scibot 15 Mar 2023
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      DOI: 10.1186/s13100-023-00290-w

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    link.springer.com/article/10.1186/s13100-023-00290-w
  38. www.sciencedirect.com www.sciencedirect.com
    Organ-specific fuel rewiring in acute and chronic hypoxia redistributes glucose and fatty acid metabolism
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    1. scibot 11 Mar 2023
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      DOI: 10.1016/j.cmet.2023.02.007

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    sciencedirect.com/science/article/pii/S1550413123000438
  39. www.sciencedirect.com www.sciencedirect.com
    Activation of β-catenin in mesenchymal progenitors leads to muscle mass loss
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    1. scibot 10 Mar 2023
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      DOI: 10.1016/j.devcel.2023.02.009

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    sciencedirect.com/science/article/pii/S1534580723000515
  40. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The dopamine neuron synaptic map in the striatum
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    1. scibot 03 Mar 2023
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      DOI: 10.1016/j.celrep.2023.112204

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    pmc.ncbi.nlm.nih.gov/articles/PMC10657204/
  41. www.sciencedirect.com www.sciencedirect.com
    Emergent variant modeling of the serological repertoire to norovirus in young children
    1
    1. scibot 02 Mar 2023
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      DOI: 10.1016/j.xcrm.2023.100954

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    sciencedirect.com/science/article/pii/S2666379123000460
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Efficient and stable metabarcoding sequencing data using a DNBSEQ-G400 sequencer validated by comprehensive community analyses
    1
    1. scibot 02 Mar 2023
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      DOI: 10.46471/gigabyte.16

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    ncbi.nlm.nih.gov/pmc/articles/PMC9632034/
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Skeletal dysplasia-causing TRPV4 mutations suppress the hypertrophic differentiation of human iPSC-derived chondrocytes
    1
    1. scibot 02 Mar 2023
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      DOI: 10.7554/eLife.71154

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  44. Feb 2023
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    Ambient oxygen levels regulate intestinal dysbiosis and GVHD severity after allogeneic stem cell transplantation
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    Single-cell RNA-seq analysis reveals dual sensing of HIV-1 in blood Axl+ dendritic cells
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    A choline-releasing glycerophosphodiesterase essential for phosphatidylcholine biosynthesis and blood stage development in the malaria parasite
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    Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies
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    Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype
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    Genomic view of the diversity and functional role of archaea and bacteria in the skeleton of the reef-building corals Porites lutea and Isopora palifera
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    A chromosome-scale assembly for tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes
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    Genetic adaptation to pathogens and increased risk of inflammatory disorders in post-Neolithic Europe
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    Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers
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    PRC2 Inactivating Mutations in Cancer Enhance Cytotoxic Response to DNMT1 Targeted Therapy via Enhanced Viral Mimicry
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    Elevated pentose phosphate pathway flux supports appendage regeneration
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    Mitochondrial pyruvate supports lymphoma proliferation by fueling a glutamate pyruvate transaminase 2-dependent glutaminolysis pathway
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    Mitochondrial pyruvate supports lymphoma proliferation by fueling a glutamate pyruvate transaminase 2–dependent glutaminolysis pathway
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    Personal exposures to fine particulate matter and carbon monoxide in relation to cooking activities in rural Malawi
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    An anti-inflammatory transcriptional cascade conserved from flies to humans
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    A feed-forward pathway drives LRRK2 kinase membrane recruitment and activation
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    A cis-regulatory lexicon of DNA motif combinations mediating cell-type-specific gene regulation
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  94. Sep 2022
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    Biological misinterpretation of transcriptional signatures in tumor samples can unknowingly undermine mechanistic understanding and faithful alignment with preclinical data
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    Combined – whole blood and skin fibroblasts- transcriptomic analysis in Psoriatic Arthritis reveals molecular signatures of activity, resistance and early response to treatment
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    Comprehensive association analysis of speech recognition thresholds after cisplatin-based chemotherapy in survivors of adult-onset cancer
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    High-fructose feeding suppresses cold-stimulated brown adipose tissue glucose uptake independently of changes in thermogenesis and the gut microbiome
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    Artificial gravity partially protects space-induced neurological deficits in Drosophila melanogaster
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    Npas3 deficiency impairs cortical astrogenesis and induces autistic-like behaviors
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    Vitamin D receptor activation is a feasible therapeutic target to impair adrenocortical tumorigenesis
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  105. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Race-associated molecular changes in gynecologic malignancies
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    Fetal sex-specific epigenetic associations with prenatal maternal depressive symptoms
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    Protocol to study the oligomeric organization of single-span transmembrane peptides using molecular dynamics simulations
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  109. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    CXCR4high megakaryocytes regulate host-defense immunity against bacterial pathogens
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    Local genetic correlations exist among neurodegenerative and neuropsychiatric diseases
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  111. aacrjournals.org aacrjournals.org
    Proteomic mapping and targeting of mitotic pericentriolar material in tumors bearing centrosome amplification
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  112. f1000research.com f1000research.com
    F1000Research Article: The burden of BRCA1 and BRCA2 gene mutations among Vietnamese women and their associated factors: A protocol for a systematic review and meta-analysis.
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    Vision-related convergent gene losses reveal SERPINE3’s unknown role in the eye
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  116. Jul 2022
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    Low ferroptosis score predicts chemotherapy responsiveness and immune-activation in colorectal cancer
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    Addition of losartan to FOLFORINOX and chemoradiation downregulates pro-invasion and immunosuppression-associated genes in locally advanced pancreatic cancer
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  120. www.embopress.org www.embopress.org
    Mitotic checkpoint gene expression is tuned by codon usage bias
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    Prediction of cellular targets in diabetic kidney diseases with single-cell transcriptomic analysis of db/db mouse kidneys
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    Group 3 innate lymphocytes make a distinct contribution to Type 17 immunity in bladder defence
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    Extracellular vesicles from thyroid cancer harbor a functional machinery involved in extracellular matrix remodeling
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    ggtranscript: an R package for the visualization and interpretation of transcript isoforms using ggplot2
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  125. Jun 2022
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    A systematic characterization of microglia-like cell occurrence during retinal organoid differentiation.
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    Cancer Stem Cells, not Bulk Tumor Cells, Determine Mechanisms of Resistance to SMO Inhibitors
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  128. www.sciencedirect.com www.sciencedirect.com
    EED is required for mouse primordial germ cell differentiation in the embryonic gonad
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  129. www.biorxiv.org www.biorxiv.org
    Replacing bar graphs of continuous data with more informative graphics: Are we making progress?
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  130. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Longitudinal single-cell dynamics of chromatin accessibility and mitochondrial mutations in chronic lymphocytic leukemia mirror disease history
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  131. www.sciencedirect.com www.sciencedirect.com
    JAZF1-SUZ12 dysregulates PRC2 function and gene expression during cell differentiation
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  132. May 2022
  133. www.sciencedirect.com www.sciencedirect.com
    Regionally defined proteomic profiles of human cerebral tissue and organoids reveal conserved molecular modules of neurodevelopment
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    A cytotoxic-skewed immune set point predicts low neutralizing antibody levels after Zika virus infection
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    Genomic and single-cell landscape reveals novel drivers and therapeutic vulnerabilities of transformed cutaneous T-cell lymphomaGenomic and single-cell landscape of transformed CTCL
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    Diversification of circulating and tumor-infiltrating plasmacytoid DCs towards the P3 (CD80+ PDL1−)-pDC subset negatively correlated with clinical outcomes in melanoma patients
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  137. gigabytejournal.com gigabytejournal.com
    LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
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  138. Apr 2022
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    HNF4A modulates glucocorticoid action in the liver
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    Risk factor-based screening compared to universal screening for gestational diabetes mellitus in marginalized Burman and Karen populations on the Thailand-Myanmar border: An observational cohort
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      DOI: 10.12688/wellcomeopenres.17743.1

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    Transcriptional analysis of peripheral memory T cells reveals Parkinson’s disease-specific gene signatures
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    Acquired resistance to EZH2 inhibitor GSK343 promotes the differentiation of human DLBCL cell lines towards an ABC-like phenotype
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    Lactate rewires lipid metabolism and sustains a metabolic-epigenetic axis in prostate cancer
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      DOI: 10.1158/0008-5472.CAN-21-0914

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  144. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Implications of Heterogeneity of Epithelial-Mesenchymal States in Acromegaly Therapeutic Pharmacologic Response
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  145. Mar 2022
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    Human and mouse trigeminal ganglia cell atlas implicates multiple cell types in migraine
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    Cdc48 influence on separase levels is independent of mitosis and suggests translational sensitivity of separase
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    Identification of Glycycometus malaysiensis (for the first time in Brazil), Blomia tropicalis and Dermatophagoides pteronyssinus through multiplex PCR
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    Race-associated Molecular Changes in Gynecologic Malignancies
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    aacrjournals.org/cancerrescommun/article/2/2/99/681553/Race-associated-Molecular-Changes-in-Gynecologic
  150. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Effect of Early-Stage Human Breast Carcinoma on Monocyte Programming
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    Gut microbial trimethylamine is elevated in alcohol-associated hepatitis and contributes to ethanol-induced liver injury in mice
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    Metabolic incorporation of electron-rich ribonucleosides enhances APEX-seq for profiling spatially restricted nascent transcriptome
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  153. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome of the ramshorn snail Biomphalaria straminea—an obligate intermediate host of schistosomiasis
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  154. Feb 2022
  155. www.sciencedirect.com www.sciencedirect.com
    EBF1 nuclear repositioning instructs chromatin refolding to promote therapy resistance in T leukemic cells
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    Single-cell analysis of human glioma and immune cells identifies S100A4 as an immunotherapy target
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    Preexisting memory CD4 T cells in naïve individuals confer robust immunity upon hepatitis B vaccination
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  158. Jan 2022
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    An ex vivo system to study cellular dynamics underlying mouse peri-implantation development
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    Tfap2b specifies an embryonic melanocyte stem cell that retains adult multifate potential
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    Enhancer RNA Expression in Response to Glucocorticoid Treatment in Murine Macrophages
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  162. Dec 2021
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    A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck)
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  164. www.sciencedirect.com www.sciencedirect.com
    Engagement of the costimulatory molecule ICOS in tissues promotes establishment of CD8+ tissue-resident memory T cells
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    Enteric virome negatively affects seroconversion following oral rotavirus vaccination in a longitudinally sampled cohort of Ghanaian infants
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    Purification of astrocyte subtype based on a double reporter mice approach for downstream transcription profiling
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  167. www.cell.com www.cell.com
    MYC assembles and stimulates topoisomerases 1 and 2 in a “topoisome”
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  168. elifesciences.org elifesciences.org
    TCR meta-clonotypes for biomarker discovery with tcrdist3 enabled identification of public, HLA-restricted clusters of SARS-CoV-2 TCRs
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    Pre-existing chromatin accessibility and gene expression differences among naive CD4+ T cells influence effector potential
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  170. Nov 2021
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  172. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Circulating Tissue Polypeptide-Specific Antigen in Pre-Diagnostic Pancreatic Cancer Samples
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    Deletion of pancreas-specific miR-216a reduces beta-cell mass and inhibits pancreatic cancer progression in mice
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    Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1
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    Dysfunctional BTN3A together with deregulated immune checkpoints and type I/II IFN dictate defective interplay between pDCs and γδ T cells in melanoma patients, which impacts clinical outcomes
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    Constraint-based modeling of yeast mitochondria reveals the dynamics of protein import and iron-sulfur cluster biogenesis
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  177. Oct 2021
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    HES1 protein oscillations are necessary for neural stem cells to exit from quiescence
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  179. www.cell.com www.cell.com
    Conserved heterodimeric GTPase Rbg1/Tma46 promotes efficient translation in eukaryotic cells
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    Parallel Reporter Assays Identify Altered Regulatory Role of rs684232 in Leading to Prostate Cancer Predisposition
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    DUX4-Induced Histone Variants H3.X and H3.Y Mark DUX4 Target Genes for Expression
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