RRID:SCR_000154
DOI: 10.1038/s44321-025-00349-6
Resource: DESeq (RRID:SCR_000154)
Curator: @scibot
SciCrunch record: RRID:SCR_000154
RRID:SCR_000154
DOI: 10.1038/s44321-025-00349-6
Resource: DESeq (RRID:SCR_000154)
Curator: @scibot
SciCrunch record: RRID:SCR_000154
RRID:AB_1147620
DOI: 10.1038/s44321-025-00349-6
Resource: (Cell Signaling Technology Cat# 2920, RRID:AB_1147620)
Curator: @scibot
SciCrunch record: RRID:AB_1147620
RRID:SCR_014583
DOI: 10.1038/s44321-025-00349-6
Resource: FastQC (RRID:SCR_014583)
Curator: @scibot
SciCrunch record: RRID:SCR_014583
RRID:SCR_019318
DOI: 10.1038/s44321-025-00349-6
Resource: SynergyFinder (RRID:SCR_019318)
Curator: @scibot
SciCrunch record: RRID:SCR_019318
RRID:SCR_016582
DOI: 10.1038/s44321-025-00349-6
Resource: kallisto (RRID:SCR_016582)
Curator: @scibot
SciCrunch record: RRID:SCR_016582
RRID:SCR_005375
DOI: 10.1038/s44321-025-00349-6
Resource: PRISM (RRID:SCR_005375)
Curator: @scibot
SciCrunch record: RRID:SCR_005375
RRID:SCR_002344
DOI: 10.1038/s44321-025-00349-6
Resource: Ensembl (RRID:SCR_002344)
Curator: @scibot
SciCrunch record: RRID:SCR_002344
RRID:SCR_010943
DOI: 10.1038/s44321-025-00349-6
Resource: LIMMA (RRID:SCR_010943)
Curator: @scibot
SciCrunch record: RRID:SCR_010943
RRID:SCR_008520
DOI: 10.1038/s44321-025-00349-6
Resource: FlowJo (RRID:SCR_008520)
Curator: @scibot
SciCrunch record: RRID:SCR_008520
RRID:SCR_011847
DOI: 10.1038/s44321-025-00349-6
Resource: Trim Galore (RRID:SCR_011847)
Curator: @scibot
SciCrunch record: RRID:SCR_011847
RRID:SCR_013672
DOI: 10.1038/s44321-025-00349-6
Resource: ZEISS ZEN Microscopy Software (RRID:SCR_013672)
Curator: @scibot
SciCrunch record: RRID:SCR_013672
RRID:IMSR_JAX:005557
DOI: 10.1038/s44321-025-00349-6
Resource: (IMSR Cat# JAX_005557,RRID:IMSR_JAX:005557)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:005557
RRID:SCR_018257
DOI: 10.1038/s44321-025-00349-6
Resource: QuPath (RRID:SCR_018257)
Curator: @scibot
SciCrunch record: RRID:SCR_018257
RRID:SCR_002798
DOI: 10.1038/s44321-025-00349-6
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @scibot
SciCrunch record: RRID:SCR_002798
RRID:SCR_004463
DOI: 10.1038/s44321-025-00349-6
Resource: rna-star (RRID:SCR_004463)
Curator: @scibot
SciCrunch record: RRID:SCR_004463
RRID:SCR_016137
DOI: 10.1038/s44321-025-00349-6
Resource: Microsoft Excel (RRID:SCR_016137)
Curator: @scibot
SciCrunch record: RRID:SCR_016137
RRID:AB_1079889
DOI: 10.1038/s42003-026-09543-9
Resource: (Sigma-Aldrich Cat# HPA002868, RRID:AB_1079889)
Curator: @scibot
SciCrunch record: RRID:AB_1079889
RRID:AB_2556752
DOI: 10.1038/s42003-026-09543-9
Resource: (Thermo Fisher Scientific Cat# SA5-10172, RRID:AB_2556752)
Curator: @scibot
SciCrunch record: RRID:AB_2556752
RRID:SCR_021351
DOI: 10.1038/s42003-026-09543-9
Resource: Zeiss Axio Observer (RRID:SCR_021351)
Curator: @scibot
SciCrunch record: RRID:SCR_021351
RRID:AB_476692
DOI: 10.1038/s42003-026-09543-9
Resource: (Sigma-Aldrich Cat# A1978, RRID:AB_476692)
Curator: @scibot
SciCrunch record: RRID:AB_476692
RRID:AB_2534088
DOI: 10.1038/s42003-026-09543-9
Resource: (Thermo Fisher Scientific Cat# A-11029, RRID:AB_2534088)
Curator: @scibot
SciCrunch record: RRID:AB_2534088
RRID:AB_621841
DOI: 10.1038/s42003-026-09543-9
Resource: (LI-COR Biosciences Cat# 926-32221, RRID:AB_621841)
Curator: @scibot
SciCrunch record: RRID:AB_621841
RRID:AB_3677457
DOI: 10.1038/s42003-026-09543-9
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_3677457
RRID:AB_2240393
DOI: 10.1038/s42003-026-09543-9
Resource: (Abcam Cat# ab6211, RRID:AB_2240393)
Curator: @scibot
SciCrunch record: RRID:AB_2240393
RRID:AB_446723
DOI: 10.1038/s42003-026-09543-9
Resource: (Abcam Cat# ab22035, RRID:AB_446723)
Curator: @scibot
SciCrunch record: RRID:AB_446723
RRID:Addgene_8454
DOI: 10.1038/s42003-026-09543-9
Resource: RRID:Addgene_8454
Curator: @scibot
SciCrunch record: RRID:Addgene_8454
RRID:AB_2286949
DOI: 10.1038/s42003-026-09543-9
Resource: (Abcam Cat# ab32127, RRID:AB_2286949)
Curator: @scibot
SciCrunch record: RRID:AB_2286949
RRID:Addgene_52961
DOI: 10.1038/s42003-026-09543-9
Resource: RRID:Addgene_52961
Curator: @scibot
SciCrunch record: RRID:Addgene_52961
RRID:AB_2633281
DOI: 10.1038/s42003-026-09543-9
Resource: (Thermo Fisher Scientific Cat# A32732, RRID:AB_2633281)
Curator: @scibot
SciCrunch record: RRID:AB_2633281
RRID:CVCL_0317
DOI: 10.1038/s42003-026-09542-w
Resource: (BCRJ Cat# 0110, RRID:CVCL_0317)
Curator: @scibot
SciCrunch record: RRID:CVCL_0317
RRID:CVCL_3708
DOI: 10.1038/s42003-026-09518-w
Resource: (IZSLER Cat# BS CL 198, RRID:CVCL_3708)
Curator: @scibot
SciCrunch record: RRID:CVCL_3708
RRID:CVCL_0042
DOI: 10.1038/s42003-026-09518-w
Resource: (RRID:CVCL_0042)
Curator: @scibot
SciCrunch record: RRID:CVCL_0042
RRID:RRID:CVCL_0063
DOI: 10.1038/s41467-026-68420-5
Resource: (RRID:CVCL_0063)
Curator: @scibot
SciCrunch record: RRID:CVCL_0063
RRID:CVCL_0006
DOI: 10.1038/s41467-026-68420-5
Resource: (RRID:CVCL_0006)
Curator: @scibot
SciCrunch record: RRID:CVCL_0006
RRID:CVCL_0504
DOI: 10.1038/s41467-026-68420-5
Resource: (ATCC Cat# CRL-2577, RRID:CVCL_0504)
Curator: @scibot
SciCrunch record: RRID:CVCL_0504
RRID:CVCL_0030
DOI: 10.1038/s41467-026-68420-5
Resource: (ICLC Cat# HTL95023, RRID:CVCL_0030)
Curator: @scibot
SciCrunch record: RRID:CVCL_0030
RRID:SCR_017330
DOI: 10.1038/s41467-026-68350-2
Resource: SynGO (RRID:SCR_017330)
Curator: @scibot
SciCrunch record: RRID:SCR_017330
RRID:SCR_002827
DOI: 10.1038/s41467-026-68350-2
Resource: HGNC (RRID:SCR_002827)
Curator: @scibot
SciCrunch record: RRID:SCR_002827
RRID:SCR_002798
DOI: 10.1016/j.ygyno.2026.02.004
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @scibot
SciCrunch record: RRID:SCR_002798
RRID:AB_2534079
DOI: 10.1016/j.xpro.2026.104367
Resource: (Thermo Fisher Scientific Cat# A-11012, RRID:AB_2534079)
Curator: @scibot
SciCrunch record: RRID:AB_2534079
RRID:AB_143165
DOI: 10.1016/j.xpro.2026.104367
Resource: (Thermo Fisher Scientific Cat# A-11008, RRID:AB_143165)
Curator: @scibot
SciCrunch record: RRID:AB_143165
RRID:AB_2534074
DOI: 10.1016/j.xpro.2026.104367
Resource: (Thermo Fisher Scientific Cat# A-11006, RRID:AB_2534074)
Curator: @scibot
SciCrunch record: RRID:AB_2534074
RRID:AB_2536161
DOI: 10.1016/j.xpro.2026.104367
Resource: (Thermo Fisher Scientific Cat# A28175, RRID:AB_2536161)
Curator: @scibot
SciCrunch record: RRID:AB_2536161
RRID:AB_1524455
DOI: 10.1016/j.xpro.2026.104361
Resource: (Abcam Cat# ab76949, RRID:AB_1524455)
Curator: @scibot
SciCrunch record: RRID:AB_1524455
RRID:AB_630828
DOI: 10.1016/j.xpro.2026.104361
Resource: (Santa Cruz Biotechnology Cat# sc-58222, RRID:AB_630828)
Curator: @scibot
SciCrunch record: RRID:AB_630828
RRID:CVCL_0030
DOI: 10.1016/j.xpro.2026.104361
Resource: (TKG Cat# TKG 0331, RRID:CVCL_0030)
Curator: @scibot
SciCrunch record: RRID:CVCL_0030
RRID:AB_2855620
DOI: 10.1016/j.xcrm.2026.102631
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2855620
RRID:AB_2893221
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Abcam Cat# ab270455, RRID:AB_2893221)
Curator: @scibot
SciCrunch record: RRID:AB_2893221
AB_2878783
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Proteintech Cat# 20986-1-AP, RRID:AB_2878783)
Curator: @scibot
SciCrunch record: RRID:AB_2878783
RRID:CVCL_0019
DOI: 10.1016/j.xcrm.2026.102631
Resource: (BCRJ Cat# 0223, RRID:CVCL_0019)
Curator: @scibot
SciCrunch record: RRID:CVCL_0019
AB_2107436
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Proteintech Cat# 60004-1-Ig, RRID:AB_2107436)
Curator: @scibot
SciCrunch record: RRID:AB_2107436
AB_10860874
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Abcam Cat# ab108387, RRID:AB_10860874)
Curator: @scibot
SciCrunch record: RRID:AB_10860874
RRID:AB_2878738
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Proteintech Cat# 20785-1-AP, RRID:AB_2878738)
Curator: @scibot
SciCrunch record: RRID:AB_2878738
RRID:AB_2269787
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Proteintech Cat# 14485-1-AP, RRID:AB_2269787)
Curator: @scibot
SciCrunch record: RRID:AB_2269787
RRID:AB_2798858
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Cell Signaling Technology Cat# 23214, RRID:AB_2798858)
Curator: @scibot
SciCrunch record: RRID:AB_2798858
RRID:AB_2918197
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Proteintech Cat# 28735-1-AP, RRID:AB_2918197)
Curator: @scibot
SciCrunch record: RRID:AB_2918197
RRID:AB_2219397
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Cell Signaling Technology Cat# 3676, RRID:AB_2219397)
Curator: @scibot
SciCrunch record: RRID:AB_2219397
RRID:AB_490795
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Cell Signaling Technology Cat# 2603, RRID:AB_490795)
Curator: @scibot
SciCrunch record: RRID:AB_490795
RRID:AB_2687505
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Cell Signaling Technology Cat# 11818, RRID:AB_2687505)
Curator: @scibot
SciCrunch record: RRID:AB_2687505
RRID:AB_331250
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Cell Signaling Technology Cat# 2535, RRID:AB_331250)
Curator: @scibot
SciCrunch record: RRID:AB_331250
RRID:AB_2799098
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Cell Signaling Technology Cat# 36406, RRID:AB_2799098)
Curator: @scibot
SciCrunch record: RRID:AB_2799098
RRID:AB_2918877
DOI: 10.1016/j.xcrm.2026.102631
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2918877
RRID:AB_2105622
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Cell Signaling Technology Cat# 2983, RRID:AB_2105622)
Curator: @scibot
SciCrunch record: RRID:AB_2105622
RRID:AB_2533745
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Thermo Fisher Scientific Cat# 44-752G, RRID:AB_2533745)
Curator: @scibot
SciCrunch record: RRID:AB_2533745
RRID:AB_2617131
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Cell Signaling Technology Cat# 12741, RRID:AB_2617131)
Curator: @scibot
SciCrunch record: RRID:AB_2617131
RRID:AB_2532491
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Thermo Fisher Scientific Cat# 701530, RRID:AB_2532491)
Curator: @scibot
SciCrunch record: RRID:AB_2532491
RRID:AB_11232216
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Proteintech Cat# 20543-1-AP, RRID:AB_11232216)
Curator: @scibot
SciCrunch record: RRID:AB_11232216
RRID:AB_330970
DOI: 10.1016/j.xcrm.2026.102631
Resource: (Cell Signaling Technology Cat# 2971, RRID:AB_330970)
Curator: @scibot
SciCrunch record: RRID:AB_330970
RRID:SCR_016245
DOI: 10.1016/j.tice.2026.103391
Resource: CLC Genomics Workbench (RRID:SCR_011853)
Curator: @scibot
SciCrunch record: RRID:SCR_011853
AB_2894003
DOI: 10.1016/j.tice.2026.103391
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2894003
RRID:SCR_002865
DOI: 10.1016/j.tice.2026.103391
Resource: SPSS (RRID:SCR_002865)
Curator: @scibot
SciCrunch record: RRID:SCR_002865
RRID:AB_2894004
DOI: 10.1016/j.tice.2026.103391
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2894004
RRID:AB_10694513
DOI: 10.1016/j.tice.2026.103391
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_10694513
RRID:AB_2894002
DOI: 10.1016/j.tice.2026.103391
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2894002
RRID:AB_2893945
DOI: 10.1016/j.tice.2026.103391
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2893945
RRID:AB_2721046
DOI: 10.1016/j.tice.2026.103391
Resource: (Cell Signaling Technology Cat# 83932, RRID:AB_2721046)
Curator: @scibot
SciCrunch record: RRID:AB_2721046
RRID:SCR_003070
DOI: 10.1016/j.tice.2026.103391
Resource: ImageJ (RRID:SCR_003070)
Curator: @scibot
SciCrunch record: RRID:SCR_003070
RRID:SCR_003193
DOI: 10.1016/j.tice.2026.103391
Resource: The Cancer Genome Atlas (RRID:SCR_003193)
Curator: @scibot
SciCrunch record: RRID:SCR_003193
RRID:CVCL_0462
DOI: 10.1016/j.tice.2026.103391
Resource: (JCRB Cat# IFO50409, RRID:CVCL_0462)
Curator: @scibot
SciCrunch record: RRID:CVCL_0462
plasmid_35064
DOI: 10.1016/j.str.2026.01.011
Resource: RRID:Addgene_35064
Curator: @scibot
SciCrunch record: RRID:Addgene_35064
RRID:AB_11123930
DOI: 10.1016/j.str.2026.01.011
Resource: (MBL International Cat# M185-3L, RRID:AB_11123930)
Curator: @scibot
SciCrunch record: RRID:AB_11123930
RRID:AB_955440
DOI: 10.1016/j.str.2026.01.011
Resource: (Abcam Cat# ab6728, RRID:AB_955440)
Curator: @scibot
SciCrunch record: RRID:AB_955440
RRID:AB_626632
DOI: 10.1016/j.str.2026.01.011
Resource: (Santa Cruz Biotechnology Cat# sc-47778, RRID:AB_626632)
Curator: @scibot
SciCrunch record: RRID:AB_626632
plasmid_74099
DOI: 10.1016/j.str.2026.01.011
Resource: RRID:Addgene_74099
Curator: @scibot
SciCrunch record: RRID:Addgene_74099
plasmid_239046
DOI: 10.1016/j.stem.2026.01.007
Resource: None
Curator: @scibot
SciCrunch record: RRID:Addgene_239046
plasmid_12253
DOI: 10.1016/j.stem.2026.01.007
Resource: RRID:Addgene_12253
Curator: @scibot
SciCrunch record: RRID:Addgene_12253
plasmid_20342
DOI: 10.1016/j.stem.2026.01.007
Resource: RRID:Addgene_20342
Curator: @scibot
SciCrunch record: RRID:Addgene_20342
plasmid_12259
DOI: 10.1016/j.stem.2026.01.007
Resource: RRID:Addgene_12259
Curator: @scibot
SciCrunch record: RRID:Addgene_12259
plasmid_52047
DOI: 10.1016/j.stem.2026.01.007
Resource: RRID:Addgene_52047
Curator: @scibot
SciCrunch record: RRID:Addgene_52047
RRID:SCR_008520
DOI: 10.1016/j.stem.2026.01.007
Resource: FlowJo (RRID:SCR_008520)
Curator: @scibot
SciCrunch record: RRID:SCR_008520
plasmid_12251
DOI: 10.1016/j.stem.2026.01.007
Resource: RRID:Addgene_12251
Curator: @scibot
SciCrunch record: RRID:Addgene_12251
RRID:CVCL_IW28
DOI: 10.1016/j.stem.2026.01.007
Resource: (RRID:CVCL_IW28)
Curator: @scibot
SciCrunch record: RRID:CVCL_IW28
RRID:SCR_002285
DOI: 10.1016/j.stem.2026.01.007
Resource: Fiji (RRID:SCR_002285)
Curator: @scibot
SciCrunch record: RRID:SCR_002285
RRID:CVCL_1E68
DOI: 10.1016/j.stem.2026.01.007
Resource: (ECACC Cat# 66540023, RRID:CVCL_1E68)
Curator: @scibot
SciCrunch record: RRID:CVCL_1E68
RRID:SCR_002798
DOI: 10.1016/j.stem.2026.01.007
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @scibot
SciCrunch record: RRID:SCR_002798
RRID:CVCL_2Z88
DOI: 10.1016/j.stem.2026.01.007
Resource: (RRID:CVCL_2Z88)
Curator: @scibot
SciCrunch record: RRID:CVCL_2Z88
RRID:CVCL_Y803
DOI: 10.1016/j.stem.2026.01.007
Resource: (Coriell Cat# GM25256, RRID:CVCL_Y803)
Curator: @scibot
SciCrunch record: RRID:CVCL_Y803
RRID:CVCL_9771
DOI: 10.1016/j.stem.2026.01.007
Resource: (RRID:CVCL_9771)
Curator: @scibot
SciCrunch record: RRID:CVCL_9771
RRID:SCR_015052
DOI: 10.1016/j.stem.2026.01.007
Resource: SnapGene (RRID:SCR_015052)
Curator: @scibot
SciCrunch record: RRID:SCR_015052
RRID:AB_2633280
DOI: 10.1016/j.stem.2026.01.007
Resource: (Thermo Fisher Scientific Cat# A32731, RRID:AB_2633280)
Curator: @scibot
SciCrunch record: RRID:AB_2633280
RRID:AB_2294104
DOI: 10.1016/j.stem.2026.01.007
Resource: (R and D Systems Cat# AF2400, RRID:AB_2294104)
Curator: @scibot
SciCrunch record: RRID:AB_2294104
RRID:AB_461064
DOI: 10.1016/j.stem.2026.01.007
Resource: (Pel-Freez Biologicals Cat# P40101-0, RRID:AB_461064)
Curator: @scibot
SciCrunch record: RRID:AB_461064
RRID:AB_2633277
DOI: 10.1016/j.stem.2026.01.007
Resource: (Thermo Fisher Scientific Cat# A32728, RRID:AB_2633277)
Curator: @scibot
SciCrunch record: RRID:AB_2633277
RRID:AB_1549585
DOI: 10.1016/j.stem.2026.01.007
Resource: (Cell Signaling Technology Cat# 3724, RRID:AB_1549585)
Curator: @scibot
SciCrunch record: RRID:AB_1549585
RRID:AB_3669120
DOI: 10.1016/j.stem.2026.01.007
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_3669120
RRID:CVCL_0063
DOI: 10.1016/j.stem.2026.01.007
Resource: (RRID:CVCL_0063)
Curator: @scibot
SciCrunch record: RRID:CVCL_0063
RRID:AB_477193
DOI: 10.1016/j.stem.2026.01.007
Resource: (Sigma-Aldrich Cat# M4403, RRID:AB_477193)
Curator: @scibot
SciCrunch record: RRID:AB_477193
RRID:AB_3251495
DOI: 10.1016/j.stem.2026.01.007
Resource: (Takara Bio Cat# 632607, RRID:AB_3251495)
Curator: @scibot
SciCrunch record: RRID:AB_3251495
RRID:AB_2750916
DOI: 10.1016/j.stem.2026.01.007
Resource: (Cell Signaling Technology Cat# 14697, RRID:AB_2750916)
Curator: @scibot
SciCrunch record: RRID:AB_2750916
RRID:CVCL_0063
DOI: 10.1016/j.redox.2026.104073
Resource: (RRID:CVCL_0063)
Curator: @scibot
SciCrunch record: RRID:CVCL_0063
RRID:CVCL_0027
DOI: 10.1016/j.redox.2026.104073
Resource: (TKG Cat# TKG 0205, RRID:CVCL_0027)
Curator: @scibot
SciCrunch record: RRID:CVCL_0027
AB_10861167
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eLife Assessment
This important study characterizes a cascade of neural processes triggered by memory-based prediction errors. The study uses an impressive collection of approaches and methods to characterize and measure cognitive control, arousal, and memory changes as a function of memory-based violations. The analyses are technically sophisticated and rigorous and, taken together, provide solid evidence that there are multiple processes accompanying prediction errors, and that they differentially relate to successful encoding. The manuscript would be much improved by the addition of a discussion or visual schematic that integrates the numerous findings together into a more coherent model.
Reviewer #1 (Public review):
Summary:
This manuscript describes a multi-modal study of associative learning and memory in humans that combines scalp EEG, pupillometry and behavioral analysis to explore the construct of mnemonic prediction errors (MPEs), in terms of their relationship to attention and cognitive control. Across two pooled studies, participants performed associative memory tasks in which they learned the relationship between a cue word (action verb) and a subsequent picture (animate or inanimate) with a strong vs. weak (4 or 1 repetitions) encoding manipulation. At test, participants were encouraged to generate a prediction following the cue word to determine whether the subsequently presented picture was a match or a mismatch. The timecourse of pupillary responses during match decisions was decomposed using temporal principal components analysis, which identified 6 distinct and overlapping processes. Some of the components (PC3/PC4) exhibited sensitivity to both the strength and mismatch conditions, as well as behavior (both RT and accuracy) and retrieval success on the subsequent trial. Furthermore, relationships were also observed between pupillary responses (specifically for PC4) and both frontal theta and posterior alpha power measures obtained from scalp EEG in Experiment 2, as well as for frontal theta and subsequent learning from mismatch stimuli (assessed using subsequent memory findings from a surprise recognition test). The authors suggest the findings indicate that MPEs elicit changes in attention, arousal and cognitive control which impact subsequent learning.
Strengths:
This manuscript has many strengths, including a clever study design, thoughtful integration of multiple neurocognitive measures, and a set of rigorous and technically sophisticated analyses, which reveal a large set of relationships among the measures and behavior. The findings demonstrating brain/physiology-behavior relationships are particularly important, in that they point to potential functional consequences of MPES.
Weaknesses:
The technical proficiency and complexity of the study and analysis also present a clear limitation and challenge for interpretation. As a reader, even those who are quite knowledgeable about the methods, constructs, and questions being addressed will often struggle (as this reviewer did) to keep the large set of findings in mind and gain an understanding of how they all fit together.
Indeed, it seems like there are many threads running together in the paper, which makes it challenging to find the through-line of the key findings, or to understand how they might relate to some pre-existing hypotheses, rather than merely interesting patterns detected in the data. In the Introduction and Discussion, it seems as if the key question is to understand the pathways by which MPEs impact cognition, but this is a rather broad topic, so it is not clear exactly what the authors are aiming at with this question and study design.
As an example, authors operationalize frontal theta power as an index of cognitive control demand, and one of the pathways by which MPEs impact cognition. But this point becomes somewhat circular, since it is not clear how or why the Mismatch x Strength interaction in frontal theta reflects that demand. It would have been better to set this pattern up in the Introduction as a theoretically driven hypothesis, since it currently appears more like a post-hoc interpretation. This is mirrored by how the issue is first brought up in the Introduction, where it states somewhat vaguely: "whether MPEs are followed by an increase in frontal theta... warrants closer examination". Later in the results, there are findings relating frontal theta to pupil dilation, posterior alpha suppression and then subsequent memory. It was hard to understand how all the findings might be linked together functionally or conceptually. Are the authors potentially postulating a mediating or mechanistic pathway, in which the MPE leads to increased cognitive control (frontal theta), which then leads to enhanced subsequent memory of those events? If this is the case, then maybe a formal path analysis would be the best way to test or state this hypothesis. It would also be useful to specify more clearly how the pupil components and alpha suppression factor into this mediating path, since it was not clear.
Relatedly, the authors suggest that internal attention and arousal also play relevant roles in this pathway, but these are also not clear. In some cases, it is stated as if this is a distinct pathway from the cognitive control one, since there is a focus in the results on the independence of frontal theta and posterior alpha, but elsewhere they seem to be treated as two aspects, or distinct steps, within a single pathway. Again, these different threads of the findings were quite challenging for the reader to follow. Pathway analyses, such as with multiple mediation or moderated mediation, could be a useful way to address this question. For example, it seems as if readiness-to-remember is another behavioral outcome (like subsequent memory) that could be used in the search for mediators.
At the minimum, it would be quite helpful to have diagrammatic figures that specify the hypothesized and observed relationships between independent variables (Strength, Mismatch), physiological indices (pupil dilation components, frontal theta, posterior alpha) and key outcome measures (accuracy, RT, next-trial retrieval success, subsequent memory), so that the reader can refer back to them as each component of the analyses is conducted.
Minor Points:
Many figures had x-axes showing a pupil component or EEG power metric broken down by quartile or quintile. Yet nowhere is it ever explained why this graphical (or analytic?) approach is used and what it reflects, or how it is decided which break down to use (quartile/quintile). If the data are analyzed as a correlation, why is a scatterplot not shown instead?
It was surprising that, unlike readiness-to-remember, which was analyzed via logistic regression and odds-ratio, subsequent memory was not analyzed in the same fashion (i.e., as a binary outcome variable predicted by frontal theta), rather than in a reverse chronological one (subsequent memory predicting frontal theta). Historically, it was the case that subsequent memory was analyzed in this manner, but that was before the era in which trial-level linear mixed-effect models were in wide usage, as they are implemented in this study. Thus, the choice seems like a wasted opportunity or a step backwards analytically.
Reviewer #2 (Public review):
Summary:
The authors studied cognitive control and attention in response to mnemonic prediction errors (MPEs): situations in which the external reality violates internal memory-based predictions. The behavioral task first established strong versus weak predictions, and then either confirmed or violated these predictions. The authors examined markers of cognitive control (frontal theta) and attention (posterior alpha suppression, pupil response) while strong and weak predictions were confirmed or violated. They found increased cognitive control (frontal theta) for strong MPEs, which correlated with subsequent memory. Markers of attention (alpha suppression, pupil response) also accompanied strong MPEs but did not correlate with subsequent memory. Pupil response was investigated using an interesting approach that decomposes the response into different components, finding that different components respond earlier or later and show different correlations with MPEs and their strength. The authors also investigated how EEG, reaction time, and pupil responses correlated with one another, providing further insight into the mechanism underlying the response to MPEs. Together, the study points toward multiple control and attention mechanisms involved in MPE response and memory.
Strengths:
The study has a clear behavioral paradigm with multiple measures - behavioral, EEG, and pupillometry that offer an investigation into different aspects of MPE response and memory.
The study is also very comprehensive in looking at multiple phases in processing MPEs: the prediction phase (prior to the violation), the response to MPEs, and subsequent memory of MPEs, all within one study. Specifically, the link between neural mechanisms and subsequent memory is a major advancement, as most prior studies did not include this component. Mechanisms underlying subsequent memory of MPEs are theoretically important, as a primary function of MPEs is to promote learning and memory. As the authors mention, the different neural and pupillary signals are not robustly correlated, suggesting multiple mechanisms underlying MPE detections, which is interesting, offers avenues for future research, and can facilitate a better theory of how MPEs are processed in the brain. Finally, the decomposition of pupil response into different components and their correlation with behavior (RT during match/MPE detection) is interesting.
Weaknesses:
The methods are rigorous, and the claims are mostly supported by the data, but there are a few weaknesses or places that could be improved:
(1) The authors conduct PCA analysis to identify different components of the pupillary response to MPE and relate them to behavior. Specifically, the authors identify components PC3 and PC4, which they interpret as related to MPE. However, some parts of the interpretation could be clearer or better justified:
(a) The authors refer to PC4 as "post-decision cognitive processing". But, given that RT was between .5-.7s, and PC3 peaked after more than 1s, wouldn't it be cautious to interpret PC3 as post-decision as well?
(b) MPEs overall elicit longer RTs in this study, suggesting that long RT is a behavioral marker of MPE. Nonetheless, the authors argue on p. 12: "Altogether, these findings indicate that when stronger mnemonic predictions (as indexed by shorter RTs) were violated." And, PC3 is correlated with shorter RTs for mismatches, meaning that behaviorally, these trials were more similar to matches. Thus, how do the authors interpret shorter versus longer RTs for MPEs, and what processes do these RT reflect?
(2) The brain to pupil relationship (p. 13-14): If I understand correctly, this was done on a trial-by-trial basis, but the high temporal resolution allows doing the analysis in a time-resolved manner - does brain activity at a certain time point preceding/following the pupil response correlate with the pupil response? It might be that cognitive control influences attention mechanisms or vice versa (because there is some overlap in the response). Although not testing causality, this temporally resolved correlation would be an interesting way to start probing how signals might influence each other.
(3) The relationships the authors find between brain measures and pupil components were largely not specific to mismatches/matches. However, are they specific to this task? I think it would benefit the paper to show that these relationships are potentially specific to making match/mismatch memory decisions, versus, e.g., any stimulus processing. For example, the authors could run the same analyses locked to stimuli in the study phase, anticipating a different pattern, if indeed these findings are specific to the associative memory task.
(4) During memory retrieval (i.e., before the probe), the authors find that frontal theta, a marker of cognitive control, was associated on a trial-by-trial basis with more posterior alpha (i.e., less alpha suppression, potentially reflecting less attention), and that this association was stronger for weaker predictions. The authors interpreted this as weaker predictions necessitating more cognitive control, and that more cognitive control was recruited specifically in trials where retrieval included less content (memory reinstatement) to attend to. Generally, cognitive control is recruited to facilitate memory retrieval. If so, one possible interpretation is that this correlation reflects cognitive control effort that has failed to produce enough memory reinstatement. The other possibility is that this correlation reflects more specific retrieval of the correct probe, without retrieval of interfering items (i.e., overall less content). I believe that the former explanation predicts that this correlation would be associated with longer RTs (more difficult decisions), while the latter predicts shorter RTs (easier decisions due to successful retrieval), at least for matches.
(5) In section 3, the authors found a positive relationship between alpha during memory retrieval and PC3 during MPE. If I understood correctly, this means that less attention during retrieval (less suppression) is correlated with a stronger PC3 response. How do the authors interpret this? Maybe along the same lines as in (5), specifically retrieving the correct information (i.e., less retrieved content to attend to) means a stronger prediction, leading to a stronger MPE, and a stronger MPE response, as reflected by PC3?
(6) The results with subsequent memory are important and address a major gap in the field that largely did not relate neural effects of MPE to subsequent memory. However, one major limitation of the study is that the authors did not test memory for matches. I understand the logic of avoiding testing matches. Because matches were repeated more times in the study, it's not a fair comparison, and could change participants' overall criterion for old/new decisions. However, one possibility would have been to test only the weak prediction; this could have given some specificity to the neural subsequent memory findings.
(7) The authors nicely characterized the different PC of pupillary MPE response. But, with respect to subsequent memory, they only present pupil size. Unless there is some methodological reason that prevents testing subsequent memory on the PC, I think this will be very informative about the potential mechanisms underlying memory of MPE.
(8) This paper includes many interesting findings, and I am not sure how they all come together into a cohesive mechanistic understanding of MPE response and subsequent memory. I think the paper would benefit from either a conceptual mechanism figure or, in the Discussion, have a summary of a proposed mechanism integrating the findings together.
(9) Relatedly, the section "Immediate, strength-sensitive neurocognitive impacts of MPEs" does not link the arguments to specific data points, so it's hard to follow which data specifically the authors are interpreting.
(10) If I understand correctly, the authors did not find improved memory for strong compared to weak MPE. First, I think this behavioral result should be incorporated in the main paper and in the interpretation of the results. Second, given that the neural effects the authors tested either correlated with memory for strong MPE or did not show a relationship with memory, what neural/pupil response could explain memory for weak MPE?
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SciCrunch record: RRID:SCR_002881
RRID:IMSR_JAX:024742
DOI: 10.1016/j.neuron.2025.12.021
Resource: (IMSR Cat# JAX_024742,RRID:IMSR_JAX:024742)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:024742
RRID:SCR_015857
DOI: 10.1016/j.neuron.2025.12.021
Resource: UltraMegaSort 2000 (RRID:SCR_015857)
Curator: @scibot
SciCrunch record: RRID:SCR_015857
RRID:SCR_014307
DOI: 10.1016/j.neuron.2025.12.021
Resource: ScanImage (RRID:SCR_014307)
Curator: @scibot
SciCrunch record: RRID:SCR_014307
RRID:IMSR_JAX:031562
DOI: 10.1016/j.neuron.2025.12.021
Resource: (IMSR Cat# JAX_031562,RRID:IMSR_JAX:031562)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:031562
RRID:IMSR_JAX:031629
DOI: 10.1016/j.neuron.2025.12.021
Resource: (IMSR Cat# JAX_031629,RRID:IMSR_JAX:031629)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:031629
RRID:SCR_008394
DOI: 10.1016/j.neuron.2025.12.021
Resource: Python Programming Language (RRID:SCR_008394)
Curator: @scibot
SciCrunch record: RRID:SCR_008394
RRID:IMSR_JAX:007909
DOI: 10.1016/j.neuron.2025.12.021
Resource: RRID:IMSR_JAX:007909
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:007909
RRID:IMSR_JAX:010908
DOI: 10.1016/j.neuron.2025.12.021
Resource: (IMSR Cat# JAX_010908,RRID:IMSR_JAX:010908)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:010908
RRID:IMSR_JAX:013044
DOI: 10.1016/j.neuron.2025.12.021
Resource: (IMSR Cat# JAX_013044,RRID:IMSR_JAX:013044)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:013044
RRID:SCR_001622
DOI: 10.1016/j.neuron.2025.12.021
Resource: MATLAB (RRID:SCR_001622)
Curator: @scibot
SciCrunch record: RRID:SCR_001622
RRID:AB_2617116
DOI: 10.1016/j.neo.2026.101289
Resource: (Millipore Cat# CP06, RRID:AB_2617116)
Curator: @scibot
SciCrunch record: RRID:AB_2617116
RRID:SCR_003070
DOI: 10.1016/j.neo.2026.101289
Resource: ImageJ (RRID:SCR_003070)
Curator: @scibot
SciCrunch record: RRID:SCR_003070
RRID:AB_10694683
DOI: 10.1016/j.neo.2026.101289
Resource: (Cell Signaling Technology Cat# 5246, RRID:AB_10694683)
Curator: @scibot
SciCrunch record: RRID:AB_10694683
RRID:AB_11179073
DOI: 10.1016/j.neo.2026.101289
Resource: (Cell Signaling Technology Cat# 4351, RRID:AB_11179073)
Curator: @scibot
SciCrunch record: RRID:AB_11179073
RRID:AB_10544537
DOI: 10.1016/j.neo.2026.101289
Resource: (Cell Signaling Technology Cat# 4499, RRID:AB_10544537)
Curator: @scibot
SciCrunch record: RRID:AB_10544537
RRID:Addgene_133885
DOI: 10.1016/j.neo.2026.101289
Resource: None
Curator: @scibot
SciCrunch record: RRID:Addgene_133885
RRID:SCR_004463
DOI: 10.1016/j.neo.2026.101289
Resource: rna-star (RRID:SCR_004463)
Curator: @scibot
SciCrunch record: RRID:SCR_004463