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Jan 2023
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Secreted phosphoprotein 1 slows neurodegeneration and rescues visual function in mouse models of aging and glaucoma

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The brain structure and the neural network features of the diurnal cuttlefish Sepia plangon

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SSRN-id4221334-html.html

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52.53.155.43/2daa560a2b97e54a9bac815ccf8a22777d2d1280/SSRN-id4221334-html.html
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The length of uninterrupted CAG repeats in stem regions of repeat disease associated hairpins determines the amount of short CAG oligonucleotides that are toxic to cells through RNA interference

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  DOI: 10.1038/s41419-022-05494-1
  
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nature.com/articles/s41419-022-05494-1
Dec 2022
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Glial regulators of ions and solutes required for specific chemosensory functions in Caenorhabditis elegans

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can-22-0677-html.html

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52.53.155.43/44df6e5da4242df185324b00d65c0339340f0087/can-22-0677-html.html
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baz1b loss-of-function in zebrafish produces phenotypic alterations consistent with the domestication syndrome

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Efficient Correction of Oncogenic KRAS and TP53 Mutations through CRISPR Base Editing

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aacrjournals.org/cancerres/article/82/17/3002/708290/Efficient-Correction-of-Oncogenic-KRAS-and-TP53
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β-hydroxybutyrate inhibits ferroptosis-mediated pancreatic damage in acute liver failure through the increase of H3K9bhb

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Food memory circuits regulate eating and energy balance

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ncbi.nlm.nih.gov/pmc/articles/PMC9877168/
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Mucosal exposure to non-tuberculous mycobacteria elicits B cell-mediated immunity against pulmonary tuberculosis

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heart-visual_manuscript_preprint_v1 (1)-html.html

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52.53.155.43/c1903e8ed65cbde32141f286ca06aad9489b0f17/heart-visual_manuscript_preprint_v1 (2)-html.html
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The calcium-sensing receptor (CaSR) regulates zebrafish sensorimotor decision making via a genetically defined cluster of hindbrain neurons

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miR-17∼92 exerts stage-specific effects in adult V-SVZ neural stem cell lineages

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Group B Streptococcus adaptation promotes survival in a hyperinflammatory diabetic wound environment

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  DOI: 10.1126/sciadv.add3221
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9651866/
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The influenza-injured lung microenvironment promotes MRSA virulence, contributing to severe secondary bacterial pneumonia

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sciencedirect.com/science/article/pii/S2211124722015996
Nov 2022
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Prenatal inflammation perturbs murine fetal hematopoietic development and causes persistent changes to postnatal immunity

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  DOI: 10.1016/j.celrep.2022.111677
  
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Protocol for base resolution mapping of ac4C using RedaC:T-seq

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1. scibot 24 Nov 2022
  
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  DOI: 10.1016/j.xpro.2022.101858
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9676198/
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Learning-related contraction of gray matter in rodent sensorimotor cortex is associated with adaptive myelination

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Bidirectional crosstalk between epithelial–mesenchymal plasticity and IFNγ-induced PD-L1 expression promotes tumour progression

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ncbi.nlm.nih.gov/pmc/articles/PMC9626257/
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MPS1 localizes to end-on microtubule-attached kinetochores to promote microtubule release

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Unmyelinated sensory neurons use Neuregulin signals to promote myelination of interneurons in the CNS

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Integrity of neuronal size in the entorhinal cortex is a biologic substrate of exceptional cognitive aging

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jneurosci.org/content/42/45/8587
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Augmin prevents merotelic attachments by promoting proper arrangement of bridging and kinetochore fibers

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A single-cell transcriptome atlas of glial diversity in the human hippocampus across the postnatal lifespan

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Oct 2022
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Phosphoproteomic mapping reveals distinct signaling actions and activation of muscle protein synthesis by Isthmin-1

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Component analysis of nucleolar protein compartments using Xenopus laevis oocytes

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ncbi.nlm.nih.gov/pmc/articles/PMC9474603/
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Human WDR5 promotes breast cancer growth and metastasis via KMT2-independent translation regulation

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The immune microenvironment landscape shows treatment-specific differences in rectal cancer patients

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  DOI: 10.3389/fimmu.2022.1011498
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9552175/
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Differential plasticity and fate of brain-resident and recruited macrophages during the onset and resolution of neuroinflammation

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sciencedirect.com/science/article/pii/S107476132200499X
Sep 2022
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F1000Research Article: Identification of prognostic biomarkers of invasive ductal carcinoma by an integrated bioinformatics approach.

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  DOI: 10.12688/f1000research.123714.1
  
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f1000research.com/articles/11-1075
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Ensembles of endothelial and mural cells promote angiogenesis in prenatal human brain

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sciencedirect.com/science/article/pii/S0092867422011266
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FOXA1 regulates alternative splicing in prostate cancer

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Human anti-smallpox long-lived memory B cells are defined by dynamic interactions in the splenic niche and long-lasting germinal center imprinting

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Comprehensive association analysis of speech recognition thresholds after cisplatin-based chemotherapy in survivors of adult-onset cancer

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  DOI: 10.1002/cam4.5218
  
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onlinelibrary.wiley.com/doi/10.1002/cam4.5218
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High-fructose feeding suppresses cold-stimulated brown adipose tissue glucose uptake independently of changes in thermogenesis and the gut microbiome

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Braking slows passive flexion during goal-directed movements of a small limb

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Defining the Immune Checkpoint Landscape in Human Colorectal Cancer Highlights the Relevance of the TIGIT/CD155 Axis for Optimizing Immunotherapy

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Human gut microbiota stimulate defined innate immune responses that vary from phylum to strain

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Landscape and age dynamics of immune cells in the Egyptian rousette bat

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STAG2 promotes the myelination transcriptional program in oligodendrocytes

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Substrate spectrum of PPM1D in the cellular response to DNA double-strand breaks

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Divergent roles for the gut intraepithelial lymphocyte GLP-1R in control of metabolism, microbiota, and T cell-induced inflammation

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Slow muscles guide fast myocyte fusion to ensure robust myotome formation despite the high spatiotemporal stochasticity of fusion events

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Protocol to study the oligomeric organization of single-span transmembrane peptides using molecular dynamics simulations

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Single-cell spatial analysis of tumor immune architecture in diffuse large B cell lymphoma

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Automated quantification of cartilage quality for hip treatment decision support

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Dysbiosis in imiquimod-induced psoriasis alters gut immunity and exacerbates colitis development

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Glial control of sphingolipid levels sculpts diurnal remodeling in a circadian circuit

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F1000Research Article: The burden of BRCA1 and BRCA2 gene mutations among Vietnamese women and their associated factors: A protocol for a systematic review and meta-analysis.

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Next Generation Pathology Detection of T cell-Antigen Presenting Cell Immune Synapses in Human Liver Allografts

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Mechanistic modelling of enzyme‐restoration effects of new recombinant liver‐targeted proteins in acute intermittent porphyria

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SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data

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Rapid GPR183-mediated recruitment of eosinophils to the lung after Mycobacterium tuberculosis infection

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The E3 ligase Thin controls homeostatic plasticity through neurotransmitter release repression

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Sen1 is a key regulator of transcription-driven conflicts

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HMCES modulates the transcriptional regulation of nodal/activin and BMP signaling in mESCs

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Mitotic checkpoint gene expression is tuned by codon usage bias

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Assessment of skin cancer precision prevention materials among Hispanics in Florida and Puerto Rico

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Biogenic action of Lactobacillus plantarum SBT2227 promotes sleep in Drosophila melanogaster

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Neoadjuvant chemotherapy induces genomic and transcriptomic changes in ovarian cancer

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Bacterial growth in multicellular aggregates leads to the emergence of complex life cycles

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Inflammaging is driven by upregulation of innate immune receptors and systemic interferon signaling and is ameliorated by dietary restriction

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Cd59 and inflammation regulate Schwann cell development

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F1000Research Article: The effect of dietary modification on executive function domains in adult individuals with obesity: A systematic review and meta-analysis of randomized controlled trials.

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ukbpheno v1.0: An R package for phenotyping health-related outcomes in the UK Biobank

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Behavioural patterns of university students during the COVID-19 pandemic: A cross-sectional study of the effects of active transportation, uninterrupted sitting time, and screen use on physical activity and sitting time

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Localization of signaling receptors maximizes cellular information acquisition in spatially structured natural environments

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Hypoxia Differentially Affects Healthy Men and Women During a Daytime Nap With a Dose-Response Relationship: a Randomized, Cross-Over Pilot Study

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ER-lysosome lipid transfer protein VPS13C/PARK23 prevents aberrant mtDNA-dependent STING signaling

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Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine

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Longitudinal single-cell dynamics of chromatin accessibility and mitochondrial mutations in chronic lymphocytic leukemia mirror disease history

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Global-run on sequencing identifies Gm11967 as an Akt-dependent long noncoding RNA involved in insulin sensitivity

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High-intensity interval training remodels the proteome and acetylome of human skeletal muscle

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Genetic factors and shared environment contribute equally to objective singing ability

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Regionally defined proteomic profiles of human cerebral tissue and organoids reveal conserved molecular modules of neurodevelopment

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F1000Research Article: The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.

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Density-Dependent Migration Characteristics of Cancer Cells Driven by Pseudopod Interaction

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Ultra high-resolution biomechanics suggest that substructures within insect mechanosensors decisively affect their sensitivity

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The role of intraspinal sensory neurons in the control of quadrupedal locomotion

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Analysis of the replanting of banana hills with infection by the bacterium <i>Ralstonia solanacearum</i> philotype II race 2 and economic losses

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Non-apoptotic activation of Drosophila caspase-2/9 modulates JNK signaling, the tumor microenvironment, and growth of wound-like tumors

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An optimized 4C-seq protocol based on cistrome and epigenome data in the mouse RAW264.7 macrophage cell line

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Do environmentally-friendly cocoa farms yield social and economic co-benefits?

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Completion of neural crest cell production and emigration is regulated by retinoic-acid-dependent inhibition of BMP signaling

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Secondary influenza challenge triggers resident memory B cell migration and rapid relocation to boost antibody secretion at infected sites

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Evolutionary plasticity in the requirement for force exerted by ligand endocytosis to activate C. elegans Notch proteins

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Ligand-independent oligomerization of TACI is controlled by the transmembrane domain and regulates proliferation of activated B cells

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Cdc48 influence on separase levels is independent of mitosis and suggests translational sensitivity of separase

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Ketogenic HMG-CoA lyase and its product β-hydroxybutyrate promote pancreatic cancer progression

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Somatic regulation of female germ cell regeneration and development in planarians

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Dopamine neuron stimulation induces context-dependent abnormal involuntary movements in healthy rats

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MYC Inhibition Halts Metastatic Breast Cancer Progression by Blocking Growth, Invasion, and Seeding

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Zinc finger protein Zfp335 controls early T-cell development and survival through β-selection-dependent and -independent mechanisms

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Slow oscillation–spindle coupling strength predicts real-life gross-motor learning in adolescents and adults

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Comprehensive transcriptomic analysis shows disturbed calcium homeostasis and deregulation of T lymphocyte apoptosis in inclusion body myositis

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Preclinical Pharmacokinetics and Dosimetry of an 89Zr Labelled Anti-PDL1 in an Orthotopic Lung Cancer Murine Model

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Preexisting memory CD4 T cells in naïve individuals confer robust immunity upon hepatitis B vaccination

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New prognostic models for extranodal natural killer T-cell lymphoma, nasal-type using Cox regression and machine learning

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Excitatory neurotransmission activates compartmentalized calcium transients in Müller glia without affecting lateral process motility

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Tuning alpha rhythms to shape conscious visual perception

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Maternal diet-induced obesity during pregnancy alters lipid supply to mouse E18.5 fetuses and changes the cardiac tissue lipidome in a sex-dependent manner

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Stress conditions promote Leishmania hybridization in vitro marked by expression of the ancestral gamete fusogen HAP2 as revealed by single-cell RNA-seq

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Multi-omic analysis reveals divergent molecular events in scarring and regenerative wound healing

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Synaptic targets of photoreceptors specialized to detect color and skylight polarization in Drosophila

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Acute restraint stress redirects prefrontal cortex circuit function through mGlu5 receptor plasticity on somatostatin-expressing interneurons

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Establishment of developmental gene silencing by ordered polycomb complex recruitment in early zebrafish embryos

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A protocol to extract cell-type-specific signatures from differentially expressed genes in bulk-tissue RNA-seq

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An ex vivo system to study cellular dynamics underlying mouse peri-implantation development

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Dopamine depletion selectively disrupts interactions between striatal neuron subtypes and LFP oscillations

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WEE1 kinase protects the stability of stalled DNA replication forks by limiting CDK2 activity

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Lipid droplet dynamics regulate adult muscle stem cell fate

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Tfap2b specifies an embryonic melanocyte stem cell that retains adult multifate potential

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MAP3K7 loss drives enhanced androgen signaling and independently confers risk of recurrence in prostate cancer with joint loss of CHD1

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CXCL4 drives fibrosis by promoting several key cellular and molecular processes

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Intracellular IL-32 regulates mitochondrial metabolism, proliferation, and differentiation of malignant plasma cells

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A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck)

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F1000Research Article: The association between therapeutic plasma exchange and the risk of mortality among patients critically ill with COVID-19: a meta-analysis..

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Enteric virome negatively affects seroconversion following oral rotavirus vaccination in a longitudinally sampled cohort of Ghanaian infants

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Altered H3 histone acetylation impairs high-fidelity DNA repair to promote cerebellar degeneration in spinocerebellar ataxia type 7

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Avian eggshell formation reveals a new paradigm for vertebrate mineralization via vesicular amorphous calcium carbonate

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SUMO orchestrates multiple alternative DNA-protein crosslink repair pathways

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Comparative brain structure and visual processing in octopus from different habitats

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Optogenetic axon guidance in embryonic zebrafish

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Merkel cell polyomavirus T-antigens regulate DICER1 mRNA stability and translation through HSC70

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Constraint-based modeling of yeast mitochondria reveals the dynamics of protein import and iron-sulfur cluster biogenesis

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Inheritance of pheromone profiles from aged D. melanogaster

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A synthetic gene circuit for imaging-free detection of signaling pulses

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Enabling high throughput drug discovery in 3D cell cultures through a novel bioprinting workflow

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HES1 protein oscillations are necessary for neural stem cells to exit from quiescence

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Conscious experiences and high-density EEG patterns predicting subjective sleep depth

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Structural and compositional diversity in the kainate receptor family

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Relationships between community composition, productivity and invasion resistance in semi-natural bacterial microcosms

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Multiscale analysis reveals that diet-dependent midgut plasticity emerges from alterations in both stem cell niche coupling and enterocyte size

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Serial assessment of measurable residual disease in medulloblastoma liquid biopsies

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Evolutionary history of the extinct Sardinian dhole

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Pre-notification and personalisation of text messages to increase questionnaire completion in a smoking cessation pregnancy RCT: an embedded randomised factorial trial

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Preclinical and Clinical Characterization of Fibroblast-derived Neuregulin-1 on Trastuzumab and Pertuzumab Activity in HER2-positive Breast Cancer

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Unannotated small RNA clusters associated with circulating extracellular vesicles detect early stage liver cancer

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BPS Publications

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Niche partitioning facilitates coexistence of closely related honey bee gut bacteria

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Follicular dendritic cells restrict interleukin-4 availability in germinal centers and foster memory B cell generation

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Control over patch encounters changes foraging behaviour

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Scanned optogenetic control of mammalian somatosensory input to map input-specific behavioral outputs

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The transcription factor BCL11A defines distinct subsets of midbrain dopaminergic neurons

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Protocol for batch imaging and quantification of cellular mismatch during Drosophila embryonic heart formation

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Lower brown adipose tissue activity is associated with non-alcoholic fatty liver disease but not changes in the gut microbiota

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Gene expression imputation across multiple tissue types provides insight into the genetic architecture of frontotemporal dementia and its clinical subtypes: A transcriptome-wide analysis on frontotemporal dementia

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The oral microbiota of wild bears in Sweden reflects the history of antibiotic use by humans

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Gain-of-function p53R172H mutation drives accumulation of neutrophils in pancreatic tumors, promoting resistance to immunotherapy

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Differential mitochondrial roles for α-synuclein in DRP1-dependent fission and PINK1/Parkin-mediated oxidation

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Single-cell RNA analysis identifies pre-migratory neural crest cells expressing markers of differentiated derivatives

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An essential role for the piRNA pathway in regulating the ribosomal RNA pool in C. elegans

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Dietary carbohydrate, particularly glucose, drives B cell lymphopoiesis and function

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Mechanistic Modeling of a Novel Oncolytic Virus, V937, to Describe Viral Kinetic and Dynamic Processes Following Intratumoral and Intravenous Administration

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Ferroptotic stress promotes the accumulation of pro-inflammatory proximal tubular cells in maladaptive renal repair

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Aortography Keypoint Tracking for Transcatheter Aortic Valve Implantation Based on Multi-Task Learning

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Optimized CRISPR-mediated gene knockin reveals FOXP3-independent maintenance of human Treg identity

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CLOCKWORK ORANGE promotes CLOCK-CYCLE activation via the putative Drosophila ortholog of CLOCK INTERACTING PROTEIN CIRCADIAN

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Hippocampal oscillatory dynamics and sleep atonia are altered in an animal model of fibromyalgia: implications in the search for biomarkers

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Contributions of a high-fat diet to Alzheimer's disease-related decline: A longitudinal behavioural and structural neuroimaging study in mouse models

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Many si/shRNAs can kill cancer cells by targeting multiple survival genes through an off-target mechanism.

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Dysregulated oxalate metabolism is a driver and therapeutic target in atherosclerosis

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The COVIDome Explorer researcher portal

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Cognitive control during audiovisual working memory engages frontotemporal theta-band interactions

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Encoding of Multiple Reward-Related Computations in Transient and Sustained High-Frequency Activity in Human OFC

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Sex Differences in the Ventral Tegmental Area and Nucleus Accumbens Proteome at Baseline and Following Nicotine Exposure

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Multisensory Logic of Infant-Directed Aggression by Males

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Mapping 22q11.2 Gene Dosage Effects on Brain Morphometry

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Simultaneous Activation of Mu and Delta Opioid Receptors Reduces Allodynia and Astrocytic Connexin 43 in an Animal Model of Neuropathic Pain

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Extracellular vesicles from mesenchymal stem cells reduce microglial-mediated neuroinflammation after cortical injury in aged Rhesus monkeys

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Maternal vitamin C regulates reprogramming of DNA methylation and germline development

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Tyr1 phosphorylation promotes phosphorylation of Ser2 on the C-terminal domain of eukaryotic RNA polymerase II by P-TEFb

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Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field

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  DOI: 10.1093/gigascience/giz102
  
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Perinatal nutrition interacts with genetic background to alter behavior in a parent‐of‐origin‐dependent manner in adult Collaborative Cross mice

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  DOI: 10.1111/gbb.12438
  
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The Inducible Response of the Nematode Caenorhabditis elegans to Members of Its Natural Microbiota Across Development and Adult Life

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  DOI: 10.3389/fmicb.2019.01793
  
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frontiersin.org/articles/10.3389/fmicb.2019.01793/full
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Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells

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  DOI: 10.7554/eLife.47605
  
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Testing the role of SOX15 in human primordial germ cell fate

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  DOI: 10.12688/wellcomeopenres.15381.1
  
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c-Met and PD-L1 on Circulating Exosomes as Diagnostic and Prognostic Markers for Pancreatic Cancer

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  DOI: 10.3390/ijms20133305
  
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Compensatory changes in degenerating spinal motoneurons sustain functional sparing in the SOD1‐G93A mouse model of amyotrophic lateral sclerosis

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  DOI: 10.1002/cne.24751
  
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Activity-dependent changes in synaptic protein complex composition are consistent in different detergents despite differential solubility

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  DOI: 10.1038/s41598-019-46690-y
  
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dev.biologists.org dev.biologists.org

Yap and its subcellular localization have distinct compartment-specific roles in the developing lung

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  DOI: 10.1242/dev.175810
  
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Spatiotemporal Patterning of Zygotic Genome Activation in a Model Vertebrate Embryo

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  DOI: 10.1016/j.devcel.2019.05.036
  
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Nociceptor deletion of Tsc2 enhances axon regeneration by inducing a conditioning injury response in dorsal root ganglia

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  DOI: 10.1523/ENEURO.0168-19.2019
  
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Mutant TDP-43 Causes Early-Stage Dose-Dependent Motor Neuron Degeneration in a TARDBP Knockin Mouse Model of ALS

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Early Developmental Trajectories of Functional Connectivity Along the Visual Pathways in Rhesus Monkeys

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Natural C. elegans Microbiota Protects against Infection via Production of a Cyclic Lipopeptide of the Viscosin Group

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  DOI: 10.1016/j.cub.2019.01.050
  
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p53 Is a Master Regulator of Proteostasis in SMARCB1-Deficient Malignant Rhabdoid Tumors

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