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Sep 2020
www.nature.com www.nature.com

Immune expression signatures as candidate prognostic biomarkers of age and gender survival differences in cutaneous melanoma

1
1. scibot 04 Sep 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1038/s41598-020-69082-z
  
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nature.com/articles/s41598-020-69082-z
Jan 2020
www.sciencedirect.com www.sciencedirect.com

Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1016/j.stem.2019.08.003
  
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sciencedirect.com/science/article/pii/S1934590919303388
onlinelibrary.wiley.com onlinelibrary.wiley.com

DNA hypermethylation is associated with invasive phenotype of malignant melanoma

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1111/exd.14047
  
  Resource: Gene Expression Omnibus (RRID:SCR_005012)
  
  Curator: @Naa003
  
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onlinelibrary.wiley.com/doi/full/10.1111/exd.14047
bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com

BPS Publications

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1111/bph.14802
  
  Resource: Gene Expression Omnibus (RRID:SCR_005012)
  
  Curator: @Naa003
  
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bpspubs.onlinelibrary.wiley.com/doi/full/10.1111/bph.14802
www.eneuro.org www.eneuro.org

Mega-analysis of gene expression in mouse models of Alzheimer’s disease

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1523/ENEURO.0226-19.2019
  
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eneuro.org/content/6/6/ENEURO.0226-19.2019
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DUX4 Suppresses MHC Class I to Promote Cancer Immune Evasion and Resistance to Checkpoint Blockade

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1016/j.devcel.2019.06.011
  
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  Curator: @ethanbadger
  
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sciencedirect.com/science/article/pii/S1534580719305295
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Stress-Induced Changes in Bone Marrow Stromal Cell Populations Revealed through Single-Cell Protein Expression Mapping

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1016/j.stem.2019.06.003
  
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sciencedirect.com/science/article/pii/S193459091930267X
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Key genes associated with diabetes mellitus and hepatocellular carcinoma

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1016/j.prp.2019.152510
  
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sciencedirect.com/science/article/pii/S0344033819307551
onlinelibrary.wiley.com onlinelibrary.wiley.com

Integrative analyses of key genes and regulatory elements in fluoride‐affected osteosarcoma

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1002/jcb.28807
  
  Resource: Gene Expression Omnibus (RRID:SCR_005012)
  
  Curator: @Naa003
  
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onlinelibrary.wiley.com/doi/full/10.1002/jcb.28807
www.sciencedirect.com www.sciencedirect.com

Untitled document

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1016/j.celrep.2019.02.036
  
  Resource: Gene Expression Omnibus (RRID:SCR_005012)
  
  Curator: @ethanbadger
  
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sciencedirect.com/science/article/pii/S2211124719302074
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LRH1-driven transcription factor circuitry for hepatocyte identity: Super-enhancer cistromic analysis

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1016/j.ebiom.2018.12.056
  
  Resource: Gene Expression Omnibus (RRID:SCR_005012)
  
  Curator: @evieth
  
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sciencedirect.com/science/article/pii/S2352396418306339
bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com

Retinal and circulating miRNA expression patterns in diabetic retinopathy: An in silico and in vivo approach

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1111/bph.14665
  
  Resource: Gene Expression Omnibus (RRID:SCR_005012)
  
  Curator: @Naa003
  
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  RRID:SCR_005012 RRIDCUR:Validated
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bpspubs.onlinelibrary.wiley.com/doi/full/10.1111/bph.14665
onlinelibrary.wiley.com onlinelibrary.wiley.com

Untitled document

1
1. scibot 12 Jan 2020
  
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  RRID:SCR_005012
  
  DOI: 10.1002/brb3.1258
  
  Resource: Gene Expression Omnibus (RRID:SCR_005012)
  
  Curator: @Naa003
  
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onlinelibrary.wiley.com/doi/full/10.1002/brb3.1258
Apr 2019
f1000research.com f1000research.com

The unfolded protein response and its potential role in Huntington ́s disease elucidated by a systems biology approach

1
1. scibot 05 Apr 2019
  
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  nif-0000-00142
  
  Curator: @jcabotaj
  
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  (Gene Expression Omnibus, RRID:SCR_007303)
  
  SciCrunch record: RRID:nif-0000-00142
  
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f1000research.com/articles/4-103/v1
www.jneurosci.org www.jneurosci.org

Demyelination Causes Adult CNS Progenitors to Revert to an Immature State and Express Immune Cues That Support Their Migration

1
1. scibot 05 Apr 2019
  
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  nif-0000-00142
  
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  (Gene Expression Omnibus, RRID:SCR_007303)
  
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jneurosci.org/content/35/1/4.long
Nov 2018
onlinelibrary.wiley.com onlinelibrary.wiley.com

Antibiotics‐induced modulation of large intestinal microbiota altered aromatic amino acid profile and expression of neurotransmitters in the hypothalamus of piglets

1
1. scibot 05 Nov 2018
  
  in Public
  
  RRID:SCR_005012
  
  Curator: @Jmenke
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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onlinelibrary.wiley.com/doi/10.1111/jnc.14333
onlinelibrary.wiley.com onlinelibrary.wiley.com

Combination of TNM staging and pathway based risk score models in patients with gastric cancer

1
1. scibot 05 Nov 2018
  
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  RRID:SCR_005012
  
  Curator: @Jmenke
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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onlinelibrary.wiley.com/doi/full/10.1002/jcb.26563
link.springer.com link.springer.com

Navigating Xenbase: An Integrated <Emphasis Type="Italic">Xenopus</Emphasis> Genomics and Gene Expression Database

1
1. scibot 05 Nov 2018
  
  in Public
  
  NCBI/GEO
  
  Curator: @evieth
  
  Resource used:
  
  (NCBI GEO DataSets, RRID:SCR_005012)
  
  SciCrunch record: RRID:SCR_005012
  
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  RRID:SCR_005012 RRIDCUR:Missing
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link.springer.com/protocol/10.1007/978-1-4939-7737-6_10
www.sciencedirect.com www.sciencedirect.com

Ret and Substrate-Derived TGF-β Maverick Regulate Space-Filling Dendrite Growth in Drosophila Sensory Neurons

1
1. scibot 05 Nov 2018
  
  in Public
  
  NCBI Gene Expression Omnibus
  
  Curator: @evieth
  
  Resource used:
  
  (NCBI GEO DataSets, RRID:SCR_005012)
  
  SciCrunch record: RRID:SCR_005012
  
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sciencedirect.com/science/article/pii/S2211124718312257
onlinelibrary.wiley.com onlinelibrary.wiley.com

Untitled document

1
1. scibot 05 Nov 2018
  
  in Public
  
  RRID:SCR_005012
  
  Curator: @anp055
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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onlinelibrary.wiley.com/doi/full/10.1002/jcb.26836
elifesciences.org elifesciences.org

Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice

1
1. scibot 05 Nov 2018
  
  in Public
  
  NCBI's Gene Expression Omnibus
  
  Curator: @evieth
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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  RRID:SCR_005012 RRIDCUR:Missing
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elifesciences.org/articles/33070
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

ICE1 promotes the link between splicing and nonsense-mediated mRNA decay

1
1. scibot 05 Nov 2018
  
  in Public
  
  NCBI GEO
  
  Curator: @evieth
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5896957/
elifesciences.org elifesciences.org

Dissection of affinity captured LINE-1 macromolecular complexes

1
1. scibot 05 Nov 2018
  
  in Public
  
  Gene Expression Omnibus at NCBI
  
  Curator: @evieth
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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elifesciences.org/articles/30094
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Base-Resolution Analysis of DNA Methylation Patterns Downstream of Dnmt3a in Mouse Naïve B Cells

1
1. scibot 05 Nov 2018
  
  in Public
  
  NCBI Gene Expression Omnibus (GEO)
  
  Curator: @evieth
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5844302/
europepmc.org europepmc.org

Untitled document

1
1. scibot 05 Nov 2018
  
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  RRID:SCR_005012
  
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europepmc.org/articles/PMC5779231/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Untitled document

1
1. scibot 05 Nov 2018
  
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  RRID:SCR_005012
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5752201/
europepmc.org europepmc.org

Context-dependent deposition and regulation of mRNAs in P-bodies.

1
1. scibot 05 Nov 2018
  
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  RRID:SCR_005012
  
  Curator: @evieth
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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  RRID:SCR_005012 RRIDCUR:Validated
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europepmc.org/articles/PMC5752201/
Nov 2017
f1000research.com f1000research.com

Untitled document

1
1. scibot 08 Nov 2017
  
  in Public
  
  RRID:SCR_005012
  
  Curator: @patriciaelyse_
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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f1000research.com/articles/5-2810/v1
academic.oup.com academic.oup.com

Combined Deletion of the Vitamin D Receptor and Calcium-Sensing Receptor Delays Wound Re-epithelialization

1
1. scibot 08 Nov 2017
  
  in Public
  
  GEO
  
  Curator: @chewbeccax
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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academic.oup.com/endo/article/158/6/1929/3077225/Combined-Deletion-of-the-Vitamin-D-Receptor-and
elifesciences.org elifesciences.org

Transcription factor TFCP2L1 patterns cells in the mouse kidney collecting ducts

1
1. scibot 08 Nov 2017
  
  in Public
  
  GEO
  
  Curator: @chewbeccax
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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elifesciences.org/articles/24265
elifesciences.org elifesciences.org

Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells

1
1. scibot 08 Nov 2017
  
  in Public
  
  GEO
  
  Curator: @chewbeccax
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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elifesciences.org/articles/23203
elifesciences.org elifesciences.org

Human biallelic MFN2 mutations induce mitochondrial dysfunction, upper body adipose hyperplasia, and suppression of leptin expression

1
1. scibot 08 Nov 2017
  
  in Public
  
  GEO
  
  Curator: @chewbeccax
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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elifesciences.org/articles/23813
continuumtest--journal.elifesciences.org continuumtest--journal.elifesciences.org

Switching of metabolic programs in response to light availability is an essential function of the cyanobacterial circadian output pathway

1
1. scibot 08 Nov 2017
  
  in Public
  
  SCR_005012
  
  Curator: @Zeljana_Babic
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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continuumtest--journal.elifesciences.org/articles/23210
www.sciencedirect.com www.sciencedirect.com

Early Molecular Stratification of High-risk Primary Biliary Cholangitis

1
1. scibot 08 Nov 2017
  
  in Public
  
  GEO data
  
  Curator: @chewbeccax
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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sciencedirect.com/science/article/pii/S2352396416305254
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Biogenesis of phased siRNAs on membrane-bound polysomes in Arabidopsis

1
1. scibot 08 Nov 2017
  
  in Public
  
  NCBI GEO
  
  Curator: @chewbeccax
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5207768/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Auxin production in the endosperm drives seed coat development in Arabidopsis

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1. scibot 08 Nov 2017
  
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2. scibot 08 Nov 2017
  
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  Curator: @gabimpine
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5135394/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Inference of gene regulation functions from dynamic transcriptome data

1
1. scibot 08 Nov 2017
  
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  SCR_005012
  
  Curator: @gabimpine
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5072840/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

MEF2C regulates cortical inhibitory and excitatory synapses and behaviors relevant to neurodevelopmental disorders

1
1. scibot 08 Nov 2017
  
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  SCR_005012
  
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  (NCBI GEO DataSets, RRID:SCR_005012)
  
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URL

ncbi.nlm.nih.gov/pmc/articles/PMC5094851/