406 Matching Annotations
  1. Jul 2021
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.1093/gigascience/giz026

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    ncbi.nlm.nih.gov/pmc/articles/PMC6446218/
  3. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.1093/gigascience/giz023

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    ncbi.nlm.nih.gov/pmc/articles/PMC6451197/
  4. elifesciences.org elifesciences.org
    A scalable platform for the development of cell-type-specific viral drivers
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    1. scibot 30 Jul 2021
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      DOI: 10.7554/eLife.48089

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    elifesciences.org/articles/48089
  5. academic.oup.com academic.oup.com
    rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
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    1. scibot 30 Jul 2021
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      DOI: 10.1093/gigascience/giz100

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    academic.oup.com/gigascience/article/8/9/giz100/5559527
  6. link.springer.com link.springer.com
    Cold-induced lipid dynamics and transcriptional programs in white adipose tissue
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    1. scibot 30 Jul 2021
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      DOI: 10.1186/s12915-019-0693-x

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    link.springer.com/article/10.1186/s12915-019-0693-x
  7. academic.oup.com academic.oup.com
    Hybrid de novo genome assembly of Chinese chestnut ( Castanea mollissima )
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    1. scibot 30 Jul 2021
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      DOI: 10.1093/gigascience/giz112

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    academic.oup.com/gigascience/article/8/9/giz112/5568369
  8. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Single‐cell RNAseq characterization of anatomically‐identified OLM interneurons in different transgenic mouse lines
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    1. scibot 30 Jul 2021
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      DOI: 10.1111/ejn.14549

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    onlinelibrary.wiley.com/doi/full/10.1111/ejn.14549
  9. www.frontiersin.org www.frontiersin.org
    The Inducible Response of the Nematode Caenorhabditis elegans to Members of Its Natural Microbiota Across Development and Adult Life
    1
    1. scibot 29 Jul 2021
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      DOI: 10.3389/fmicb.2019.01793

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    frontiersin.org/articles/10.3389/fmicb.2019.01793/full
  10. www.nature.com www.nature.com
    Intracellular Zn 2+ transients modulate global gene expression in dissociated rat hippocampal neurons
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    1. scibot 29 Jul 2021
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      DOI: 10.1038/s41598-019-45844-2

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    nature.com/articles/s41598-019-45844-2
  11. academic.oup.com academic.oup.com
    Identification of Betamethasone-Regulated Target Genes and Cell Pathways in Fetal Rat Lung Mesenchymal Fibroblasts
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    1. scibot 29 Jul 2021
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      DOI: 10.1210/en.2018-01071

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    academic.oup.com/endo/article/160/8/1868/5490761
  12. www.sciencedirect.com www.sciencedirect.com
    Epigenetic Compensation Promotes Liver Regeneration
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    1. scibot 29 Jul 2021
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      DOI: 10.1016/j.devcel.2019.05.034

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    sciencedirect.com/science/article/pii/S1534580719304472
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    Heart Regeneration in the Mexican Cavefish
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    1. scibot 29 Jul 2021
      RRID:SCR_011848

      DOI: 10.1016/j.celrep.2018.10.072

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    sciencedirect.com/science/article/pii/S2211124718316760
  14. europepmc.org europepmc.org
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    1. scibot 29 Jul 2021
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      DOI: 10.1093/gigascience/gix113

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    europepmc.org/articles/PMC5774507/
  15. www.sciencedirect.com www.sciencedirect.com
    Genomic Analysis of Demographic History and Ecological Niche Modeling in the Endangered Sumatran Rhinoceros Dicerorhinus sumatrensis
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    1. scibot 29 Jul 2021
      RRID:SCR_011848

      DOI: 10.1016/j.cub.2017.11.021

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    2. scibot 27 Jul 2021
      Trimmomatic

      DOI: 10.1016/j.cub.2017.11.021

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    sciencedirect.com/science/article/pii/S0960982217314665
  16. academic.oup.com academic.oup.com
    Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
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    1. scibot 28 Jul 2021
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      DOI: 10.1093/gigascience/giy158

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    academic.oup.com/gigascience/article/8/4/giy158/5241890
  17. www.sciencedirect.com www.sciencedirect.com
    Energetic Trade-Offs and Hypometabolic States Promote Disease Tolerance
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    1. scibot 28 Jul 2021
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      DOI: 10.1016/j.cell.2019.01.050

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    sciencedirect.com/science/article/pii/S0092867419301138
  18. www.sciencedirect.com www.sciencedirect.com
    PI3K Inhibition Activates SGK1 via a Feedback Loop to Promote Chromatin-Based Regulation of ER-Dependent Gene Expression
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    1. scibot 28 Jul 2021
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      DOI: 10.1016/j.celrep.2019.02.111

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    sciencedirect.com/science/article/pii/S2211124719302979
  19. www.sciencedirect.com www.sciencedirect.com
    Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance
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    1. scibot 28 Jul 2021
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    sciencedirect.com/science/article/pii/S1097276518310967
  20. academic.oup.com academic.oup.com
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    1. scibot 28 Jul 2021
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      DOI: 10.1093/nar/gky232

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    academic.oup.com/nar/article/46/11/5426/4956182
  21. elifesciences.org elifesciences.org
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    1. scibot 28 Jul 2021
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      DOI: 10.7554/eLife.20375

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    elifesciences.org/articles/20375
  22. academic.oup.com academic.oup.com
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    1. scibot 28 Jul 2021
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      DOI: 10.1093/gigascience/gix128

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    academic.oup.com/gigascience/article/7/2/gix128/4750781
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1. scibot 28 Jul 2021
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      DOI: 10.1093/gigascience/giy146

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    ncbi.nlm.nih.gov/pmc/articles/PMC6329441/
  24. onlinelibrary.wiley.com onlinelibrary.wiley.com
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    1. scibot 28 Jul 2021
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      DOI: 10.1002/cne.24282

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    onlinelibrary.wiley.com/doi/10.1002/cne.24282/full
  25. www.sciencedirect.com www.sciencedirect.com
    An Interleukin-23-Interleukin-22 Axis Regulates Intestinal Microbial Homeostasis to Protect from Diet-Induced Atherosclerosis
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      DOI: 10.1016/j.immuni.2018.09.011

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    sciencedirect.com/science/article/pii/S1074761318304266
  26. www.authorea.com www.authorea.com
    Chromosome-level genome assembly of the sweet potato weevil, Cylas formicarius (Fabricius) (Coleoptera: Brentidae) and functional characteristics of CforOBP4-6
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    1. scibot 01 Jul 2021
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      DOI: 10.22541/au.162460541.11570297/v1

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    authorea.com/users/421871/articles/527720-chromosome-level-genome-assembly-of-the-sweet-potato-weevil-cylas-formicarius-fabricius-coleoptera-brentidae-and-functional-characteristics-of-cforobp4-6
  27. Jun 2021
  28. www.sciencedirect.com www.sciencedirect.com
    A drastic shift in the energetic landscape of toothed whale sperm cells
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    1. scibot 25 Jun 2021
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      DOI: 10.1016/j.cub.2021.05.062

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    sciencedirect.com/science/article/pii/S0960982221007600
  29. academic.oup.com academic.oup.com
    A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome
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    1. scibot 23 Jun 2021
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      DOI: 10.1093/gigascience/giz026

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    academic.oup.com/gigascience/article/8/4/giz026/5426564
  30. elifesciences.org elifesciences.org
    Myoglobin primary structure reveals multiple convergent transitions to semi-aquatic life in the world's smallest mammalian divers
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    1. scibot 18 Jun 2021
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      DOI: 10.7554/eLife.66797

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    elifesciences.org/articles/66797
  31. www.sciencedirect.com www.sciencedirect.com
    Protocol for using heterologous spike-ins to normalize for technical variation in chromatin immunoprecipitation
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      DOI: 10.1016/j.xpro.2021.100609

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    sciencedirect.com/science/article/pii/S2666166721003166
  32. May 2021
  33. www.sciencedirect.com www.sciencedirect.com
    Gut vascular barrier impairment leads to intestinal bacteria dissemination and colorectal cancer metastasis to liver
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    1. scibot 11 May 2021
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    sciencedirect.com/science/article/pii/S1535610821001628
  34. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    Clinical responsiveness to All-trans Retinoic Acid is potentiated by LSD1 inhibition and associated with a quiescent transcriptome in myeloid malignancies
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      DOI: 10.1158/1078-0432.CCR-20-4054

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  35. www.sciencedirect.com www.sciencedirect.com
    Generation of hypothalamic arcuate organoids from human induced pluripotent stem cells
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    1. scibot 09 May 2021
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    sciencedirect.com/science/article/pii/S1934590921001636
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    Sequential CRISPR gene editing in human iPSCs charts the clonal evolution of myeloid leukemia and identifies early disease targets
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      DOI: 10.1016/j.stem.2021.01.011

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    sciencedirect.com/science/article/pii/S1934590921000114
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    Adult Neural Stem Cells Are Alerted by Systemic Inflammation through TNF-α Receptor Signaling
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      DOI: 10.1016/j.stem.2020.10.016

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    sciencedirect.com/science/article/pii/S1934590920305105
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    Mesenchymal Niche-Derived Neuregulin-1 Drives Intestinal Stem Cell Proliferation and Regeneration of Damaged Epithelium
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      DOI: 10.1016/j.stem.2020.06.021

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    sciencedirect.com/science/article/pii/S1934590920302885
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    An intrinsically disordered region-mediated confinement state contributes to the dynamics and function of transcription factors
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    sciencedirect.com/science/article/pii/S1097276521000137
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    Repetitive Elements Trigger RIG-I-like Receptor Signaling that Regulates the Emergence of Hematopoietic Stem and Progenitor Cells
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      DOI: 10.1016/j.immuni.2020.10.007

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    sciencedirect.com/science/article/pii/S1074761320304489
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    Whole-genome analysis of giraffe supports four distinct species
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      DOI: 10.1016/j.cub.2021.04.033

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    sciencedirect.com/science/article/pii/S0960982221005467
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    New Lineage of Microbial Predators Adds Complexity to Reconstructing the Evolutionary Origin of Animals
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      DOI: 10.1016/j.cub.2020.08.061

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    sciencedirect.com/science/article/pii/S0960982220312513
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Shedding Light on the Dynamic Role of the “Target of Rapamycin” Kinase in the Fast-Growing C4 Species Setaria viridis, a Suitable Model for Biomass Crops
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      DOI: 10.3389/fpls.2021.637508

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    ncbi.nlm.nih.gov/pmc/articles/PMC8078139/
  44. Apr 2021
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    Immunogenomic Landscape of Hematological Malignancies
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      DOI: 10.1016/j.ccell.2020.06.002

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    Distinct Transcriptional Responses across Tissue-Resident Macrophages to Short-Term and Long-Term Metabolic Challenge
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    Direct reprogramming of oligodendrocyte precursor cells into GABAergic inhibitory neurons by a single homeodomain transcription factor Dlx2
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  57. Jan 2021
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  60. Dec 2020
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  63. Nov 2020
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    Gbx2 Identifies Two Amacrine Cell Subtypes with Distinct Molecular, Morphological, and Physiological Properties
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    Human Pluripotent Stem Cell-Derived Neural Cells and Brain Organoids Reveal SARS-CoV-2 Neurotropism Predominates in Choroid Plexus Epithelium
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    Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa
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    Senescence-Induced Vascular Remodeling Creates Therapeutic Vulnerabilities in Pancreas Cancer
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    Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
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    Enhanced Detection of DNA Viruses in the Cerebrospinal Fluid of Encephalitis Patients Using Metagenomic Next-Generation Sequencing
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    De novo Assembly of Transcriptomes From a B73 Maize Line Introgressed With a QTL for Resistance to Gray Leaf Spot Disease Reveals a Candidate Allele of a Lectin Receptor-Like Kinase
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    OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature
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    Postprandial Hypoglycemia in Patients after Gastric Bypass Surgery Is Mediated by Glucose-Induced IL-1β
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    A moth odorant receptor highly expressed in the ovipositor is involved in detecting host-plant volatiles
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    Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy
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    Pathogenic Tau Causes a Toxic Depletion of Nuclear Calcium
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    Islet O-GlcNAcylation Is Required for Lipid Potentiation of Insulin Secretion through SERCA2
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    Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains
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    Transcriptional Correlates of Tolerance and Lethality in Mice Predict Ebola Virus Disease Patient Outcomes
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    Chromosome‐level genome assembly of a cyprinid fish Onychostoma macrolepis by integration of Nanopore Sequencing, Bionano and Hi‐C technology
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    The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates
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    Combinatorial action of NF–Y and TALE at embryonic enhancers defines distinct gene expression programs during zygotic genome activation in zebrafish
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    Genome-wide analysis of the H3K27me3 epigenome and transcriptome in Brassica rapa
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    Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling
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    Single-Cell RNA-Seq Reveals Developmental Origins and Ontogenetic Stability of Neurexin Alternative Splicing Profiles
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    Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
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    Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF
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    Genome-Edited Triple-Recessive Mutation Alters Seed Dormancy in Wheat
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    m6A mRNA Methylation Is Essential for Oligodendrocyte Maturation and CNS Myelination
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    A Unique Epigenomic Landscape Defines Human Erythropoiesis
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    FOXA2 Is Required for Enhancer Priming during Pancreatic Differentiation
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    Activation Dynamics and Immunoglobulin Evolution of Pre-existing and Newly Generated Human Memory B cell Responses to Influenza Hemagglutinin
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    Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data
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    A Cross-Species Analysis Reveals a General Role for Piezo2 in Mechanosensory Specialization of Trigeminal Ganglia from Tactile Specialist Birds
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    Distinct Immune Cell Populations Define Response to Anti-PD-1 Monotherapy and Anti-PD-1/Anti-CTLA-4 Combined Therapy
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    Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry
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    The genomic basis for colonizing the freezing Southern Ocean revealed by Antarctic toothfish and Patagonian robalo genomes
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    Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale
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    Intestinal Bile Acids Induce a Morphotype Switch in Vancomycin-Resistant Enterococcus that Facilitates Intestinal Colonization
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      DOI: 10.1016/j.chom.2019.03.008

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    Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping
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      DOI: 10.1093/gigascience/giz027

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    Identification of piRNA Binding Sites Reveals the Argonaute Regulatory Landscape of the C. elegans Germline
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    Targeting Processive Transcription Elongation via SEC Disruption for MYC-Induced Cancer Therapy
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    Genome-wide Identification of Structure-Forming Repeats as Principal Sites of Fork Collapse upon ATR Inhibition
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    Suppression of Plant Immunity by Fungal Chitinase-like Effectors
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    Differential m6A, m6Am, and m1A Demethylation Mediated by FTO in the Cell Nucleus and Cytoplasm
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    Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response
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    Dppa2/4 Facilitate Epigenetic Remodeling during Reprogramming to Pluripotency
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    Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology
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    A Novel Eukaryotic Denitrification Pathway in Foraminifera
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    Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress
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    Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data
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    Id1 Ablation Protects Hematopoietic Stem Cells from Stress-Induced Exhaustion and Aging
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    Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription
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    EZH2-Mediated Primary Cilium Deconstruction Drives Metastatic Melanoma Formation
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  166. elifesciences.org elifesciences.org
    TALE factors use two distinct functional modes to control an essential zebrafish gene expression program
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    AMPK/FIS1-Mediated Mitophagy Is Required for Self-Renewal of Human AML Stem Cells
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  169. elifesciences.org elifesciences.org
    Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice
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    Isolation of primitive mouse extraembryonic endoderm (pXEN) stem cell lines
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  172. academic.oup.com academic.oup.com
    Whole-Genome De Novo sequencing reveals unique genes that contributed to the adaptive evolution of the mikado pheasant
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    Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly
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    Homoeolog-specific activation of genes for heat acclimation in the allopolyploid grass Brachypodium hybridum
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    Extremely Divergent Haplotypes in Two Toxin Gene Complexes Encode Alternative Venom Types within Rattlesnake Species
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    Genome assembly of the Pink Ipê (Handroanthus impetiginosus, Bignoniaceae), a highly valued, ecologically keystone Neotropical timber forest tree
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    Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch
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    Chromatin Accessibility-Based Characterization of the Gene Regulatory Network Underlying Plasmodium falciparum Blood-Stage Development
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    SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data.
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    Epitranscriptomic m6A Regulation of Axon Regeneration in the Adult Mammalian Nervous System
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    Non-classical Immunity Controls Microbiota Impact on Skin Immunity and Tissue Repair
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    Context-dependent deposition and regulation of mRNAs in P-bodies.
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    White Adipose Tissue Is a Reservoir for Memory T Cells and Promotes Protective Memory Responses to Infection
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    Co-expression of xenopsin and rhabdomeric opsin in photoreceptors bearing microvilli and cilia.
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    A tissue-specific, Gata6-driven transcriptional program instructs remodeling of the mature arterial tree.
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    Role of the Astroglial Glutamate Exchanger xCT in Ventral Hippocampus in Resilience to Stress
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    De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read
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    Global Inhibition with Specific Activation: How p53 and MYC Redistribute the Transcriptome in the DNA Double-Strand Break Response
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    Muscle Stem Cells Undergo Extensive Clonal Drift during Tissue Growth via Meox1-Mediated Induction of G2 Cell-Cycle Arrest
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    Massively Parallel Biophysical Analysis of CRISPR-Cas Complexes on Next Generation Sequencing Chips
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    Red Blood Cell Invasion by the Malaria Parasite Is Coordinated by the PfAP2-I Transcription Factor
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    Novel Predators Reshape Holozoan Phylogeny and Reveal the Presence of a Two-Component Signaling System in the Ancestor of Animals
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    Bread Affects Clinical Parameters and Induces Gut Microbiome-Associated Personal Glycemic Responses
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