Abstract

Background

Abstract

Citrus greening disease

Abstract

Now published in GigaScience doi: 10.1093/gigascience/giz154 Andreas Bremges 1Computational Biology of Infection Research, Helmholtz Centre for Infection Research, 38124 Braunschweig, Germany2German Center for Infection Research (DZIF), partner site Hannover-Braunschweig, 38124 Braunschweig, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Andreas BremgesFor correspondence: andreas.bremges@helmholtz-hzi.de alice.mchardy@helmholtz-hzi.deAdrian Fritz 1Computational Biology of Infection Research, Helmholtz Centre for Infection Research, 38124 Braunschweig, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlice C. Mchardy 1Computational Biology of Infection Research, Helmholtz Centre for Infection Research, 38124 Braunschweig, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: andreas.bremges@helmholtz-hzi.de alice.mchardy@helmholtz-hzi.de

Abstract

Abstract

Now published in GigaScience doi: 10.1093/gigascience/giab063 Yilei Fu 1Department of Computer Science, Rice University, Houston, TX 77005, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Yilei FuMedhat Mahmoud 2Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, United States of America3Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, United States of AmericaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Medhat MahmoudViginesh Vaibhav Muraliraman 1Department of Computer Science, Rice University, Houston, TX 77005, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFritz J. Sedlazeck 2Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, United States of AmericaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Fritz J. SedlazeckFor correspondence: Fritz.Sedlazeck@bcm.edu treangen@rice.eduTodd J. Treangen 1Department of Computer Science, Rice University, Houston, TX 77005, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Todd J. TreangenFor correspondence: Fritz.Sedlazeck@bcm.edu treangen@rice.edu

Now published in GigaScience doi: 10.1093/gigascience/giab062 Lukas M. Weber 1Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lukas M. WeberAriel A. Hippen 2Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, PA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ariel A. HippenPeter F. Hickey 3Advanced Technology & Biology Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Peter F. HickeyKristofer C. Berrett 4Huntsman Cancer Institute and Department of Population Health Sciences, University of Utah, UT, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kristofer C. BerrettJason Gertz 4Huntsman Cancer Institute and Department of Population Health Sciences, University of Utah, UT, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jason GertzJennifer Anne Doherty 4Huntsman Cancer Institute and Department of Population Health Sciences, University of Utah, UT, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStephanie C. Hicks 1Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Stephanie C. HicksFor correspondence: shicks19@jhu.edu

Abstract

Now published in GigaScience doi: 10.1093/gigascience/giab056 Shufang Wu 1State Key Laboratory for Turbulence and Complex Systems and Department of Biomedical Engineering, College of Engineering, Peking University, Beijing 100871, China2Center for Quantitative Biology, Peking University, Beijing 100871, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZhencheng Fang 1State Key Laboratory for Turbulence and Complex Systems and Department of Biomedical Engineering, College of Engineering, Peking University, Beijing 100871, China2Center for Quantitative Biology, Peking University, Beijing 100871, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJie Tan 1State Key Laboratory for Turbulence and Complex Systems and Department of Biomedical Engineering, College of Engineering, Peking University, Beijing 100871, China2Center for Quantitative Biology, Peking University, Beijing 100871, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMo Li 3Peking University-Tsinghua University - National Institute of Biological Sciences (PTN) joint PhD program, School of Life Sciences, Peking University, Beijing 100871, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteChunhui Wang 3Peking University-Tsinghua University - National Institute of Biological Sciences (PTN) joint PhD program, School of Life Sciences, Peking University, Beijing 100871, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteQian Guo 1State Key Laboratory for Turbulence and Complex Systems and Department of Biomedical Engineering, College of Engineering, Peking University, Beijing 100871, China2Center for Quantitative Biology, Peking University, Beijing 100871, China4Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Georgia 30332, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCongmin Xu 1State Key Laboratory for Turbulence and Complex Systems and Department of Biomedical Engineering, College of Engineering, Peking University, Beijing 100871, China2Center for Quantitative Biology, Peking University, Beijing 100871, China4Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Georgia 30332, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiaoqing Jiang 1State Key Laboratory for Turbulence and Complex Systems and Department of Biomedical Engineering, College of Engineering, Peking University, Beijing 100871, China2Center for Quantitative Biology, Peking University, Beijing 100871, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHuaiqiu Zhu 1State Key Laboratory for Turbulence and Complex Systems and Department of Biomedical Engineering, College of Engineering, Peking University, Beijing 100871, China2Center for Quantitative Biology, Peking University, Beijing 100871, China4Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Georgia 30332, USA5Institute of Medical Technology, Peking University Health Science Center, Beijing 100191, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Huaiqiu ZhuFor correspondence: hqzhu@pku.edu.cn

Now published in GigaScience doi: 10.1093/gigascience/giab004 Fan Zhang 1Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI 48109, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Fan ZhangFor correspondence: fanzhang@umich.eduHyun Min Kang 2Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI 48109, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz121 Yun-Ching Chen 1Bioinformatics and Computational Biology Core, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, United StatesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAbhilash Suresh 1Bioinformatics and Computational Biology Core, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, United StatesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteChingiz Underbayev 2Hematology Branch, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, United StatesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteClare Sun 2Hematology Branch, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, United StatesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKomudi Singh 1Bioinformatics and Computational Biology Core, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, United StatesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFayaz Seifuddin 1Bioinformatics and Computational Biology Core, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, United StatesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAdrian Wiestner 2Hematology Branch, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, United StatesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMehdi Pirooznia 1Bioinformatics and Computational Biology Core, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, United StatesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: mehdi.pirooznia@nih.gov

Now published in GigaScience doi: 10.1093/gigascience/giz118 Xiao Hu Find this author on Google ScholarFind this author on PubMedSearch for this author on this site

COVID-19 pandemic

Background

Abstract

Abstract

Now published in GigaScience doi: 10.1093/gigascience/giz087 Anne Senabouth 1Institute for Molecular Bioscience, University of Queensland, Brisbane, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSamuel W Lukowski 1Institute for Molecular Bioscience, University of Queensland, Brisbane, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJose Alquicira Hernandez 1Institute for Molecular Bioscience, University of Queensland, Brisbane, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStacey Andersen 1Institute for Molecular Bioscience, University of Queensland, Brisbane, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXin Mei 2South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteQuan H Nguyen 1Institute for Molecular Bioscience, University of Queensland, Brisbane, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJoseph E Powell 1Institute for Molecular Bioscience, University of Queensland, Brisbane, Australia3Queensland Brain Institute, University of Queensland, Brisbane, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Background

Abstract

Now published in GigaScience doi: 10.1093/gigascience/giaa083 Andre Macedo Chronic Diseases Research Center (CEDOC), NOVA Medical School | Faculdade de Ciências Médicas, Universidade Nova de Lisboa, Rua do Instituto Bacteriológico 5, 1150-190, Lisbon, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Andre MacedoFor correspondence: andre.macedo@nms.unl.pt alisson.gontijo@nms.unl.ptAlisson M. Gontijo Chronic Diseases Research Center (CEDOC), NOVA Medical School | Faculdade de Ciências Médicas, Universidade Nova de Lisboa, Rua do Instituto Bacteriológico 5, 1150-190, Lisbon, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alisson M. GontijoFor correspondence: andre.macedo@nms.unl.pt alisson.gontijo@nms.unl.pt

Now published in GigaScience doi: 10.1093/gigascience/giz149 Michal Stolarczyk 1Center for Public Health Genomics, University of VirginiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteVincent P. Reuter 1Center for Public Health Genomics, University of VirginiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNeal E. Magee 5Research Computing, University of VirginiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNathan C. Sheffield 1Center for Public Health Genomics, University of Virginia2Department of Public Health Sciences, University of Virginia3Department of Biomedical Engineering, University of Virginia4Department of Biochemistry and Molecular Genetics, University of VirginiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nathan C. SheffieldFor correspondence: nsheffield@virginia.edu

Now published in GigaScience doi: 10.1093/gigascience/giz115 Bo Song 1BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China3State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYue Song 1BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China3State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, China4BGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYuan Fu 1BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteElizabeth Balyejusa Kizito 5Uganda Christian University, Bishop Tucker Road, Box 4, Mukono, UgandaFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePamela Nahamya Kabod 5Uganda Christian University, Bishop Tucker Road, Box 4, Mukono, UgandaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHuan Liu 1BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China3State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSandra Ndagire Kamenya 5Uganda Christian University, Bishop Tucker Road, Box 4, Mukono, UgandaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSamuel Muthemba 6African Orphan Crops Consortium, World Agroforestry Centre (ICRAF), Nairobi, KenyaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRobert Kariba 6African Orphan Crops Consortium, World Agroforestry Centre (ICRAF), Nairobi, KenyaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiuli Li 1BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSibo Wang 1BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China3State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShifeng Cheng 1BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlice Muchugi 6African Orphan Crops Consortium, World Agroforestry Centre (ICRAF), Nairobi, KenyaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRamni Jamnadass 6African Orphan Crops Consortium, World Agroforestry Centre (ICRAF), Nairobi, KenyaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHoward-Yana Shapiro 6African Orphan Crops Consortium, World Agroforestry Centre (ICRAF), Nairobi, Kenya7University of California, 1 Shields Ave, Davis, USA9Mars, Incorporated, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAllen Van Deynze 7University of California, 1 Shields Ave, Davis, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHuanming Yang 1BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJian Wang 1BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXun Xu 1BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China3State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDamaris Achieng Odeny 8ICRISAT-Nairobi, Nairobi, KenyaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: liuxin@genomics D.Odney@cigar.orgXin Liu 1BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China3State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: liuxin@genomics D.Odney@cigar.org

Now published in GigaScience doi: 10.1093/gigascience/giz119 Sion C. Bayliss 1The Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath BA2 7AYFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sion C. BaylissFor correspondence: s.bayliss@bath.ac.ukHarry A. Thorpe 1The Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath BA2 7AYFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Harry A. ThorpeNicola M. Coyle 1The Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath BA2 7AYFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nicola M. CoyleSamuel K. Sheppard 1The Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath BA2 7AYFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Samuel K. SheppardEdward J. Feil 1The Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath BA2 7AYFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Edward J. Feil

Now published in GigaScience doi: 10.1093/gigascience/giz100 Elena Bushmanova 1Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDmitry Antipov 1Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlla Lapidus 1Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz105 Luca Alessandrì 2Department of Molecular Biotechnology and Health Sciences, University of Torino, Via Nizza 52, Torino, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMarco Beccuti 1Department of Computer Sciences, University of Torino, Corso Svizzera 185, Torino, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMaddalena Arigoni 2Department of Molecular Biotechnology and Health Sciences, University of Torino, Via Nizza 52, Torino, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMartina Olivero 3Department of Oncology, University of Torino, SP142, 95, 10060 Candiolo TO, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGreta Romano 1Department of Computer Sciences, University of Torino, Corso Svizzera 185, Torino, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGennaro De Libero 4Department Biomedizin, University of Basel, Hebelstrasse 20, 4031 Basel, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLuigia Pace 5IIGM, Via Nizza 52, Torino, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFrancesca Cordero 1Department of Computer Sciences, University of Torino, Corso Svizzera 185, Torino, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRaffaele A Calogero 2Department of Molecular Biotechnology and Health Sciences, University of Torino, Via Nizza 52, Torino, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz106 Yingxin Lin 1School of Mathematics and Statistics, University of Sydney, NSW 2006, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShila Ghazanfar 1School of Mathematics and Statistics, University of Sydney, NSW 2006, Australia2Charles Perkins Centre, University of Sydney, NSW 2006, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDario Strbenac 1School of Mathematics and Statistics, University of Sydney, NSW 2006, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAndy Wang 1School of Mathematics and Statistics, University of Sydney, NSW 2006, Australia3Sydney Medical School, University of Sydney, NSW 2006, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEllis Patrick 1School of Mathematics and Statistics, University of Sydney, NSW 2006, Australia4Westmead Institute for Medical Research, University of Sydney, Westmead, NSW 2145, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDave Lin 5Department of Biomedical Sciences, Cornell University, Ithaca, NY, 14853, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTerence Speed 6Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, VIC 3052, Australia7Department of Mathematics and Statistics, University of Melbourne, Melbourne, VIC 3010, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJean YH Yang 1School of Mathematics and Statistics, University of Sydney, NSW 2006, Australia2Charles Perkins Centre, University of Sydney, NSW 2006, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jean YH YangPengyi Yang 1School of Mathematics and Statistics, University of Sydney, NSW 2006, Australia2Charles Perkins Centre, University of Sydney, NSW 2006, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz107 Thomas P. Quinn 1Bioinformatics Core Research Group, Deakin University, 3220, Geelong, Australia2Centre for Molecular and Medical Research, Deakin University, 3220, Geelong, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Thomas P. QuinnIonas Erb 3Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr Aiguader 88, 08003, Barcelona, SpainFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGreg Gloor 4Department of Biochemistry, University of Western Ontario, London, Ontario, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCedric Notredame 3Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr Aiguader 88, 08003, Barcelona, SpainFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMark F. Richardson 1Bioinformatics Core Research Group, Deakin University, 3220, Geelong, Australia5Genomics Centre, School of Life and Environmental Sciences, Deakin University, 3220, Geelong, Australia6Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, 3220, Geelong, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTamsyn M. Crowley 7Poultry Hub Australia, University of New England, 2351, Armidale, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz094 Marek Wiewiórka 1Institute of Computer Science, Warsaw University of Technology, ul. Nowowiejska 15/19, 00-665 Warsaw, PolandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marek WiewiórkaAgnieszka Szmurło 1Institute of Computer Science, Warsaw University of Technology, ul. Nowowiejska 15/19, 00-665 Warsaw, PolandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Agnieszka SzmurłoTomasz Gambin 1Institute of Computer Science, Warsaw University of Technology, ul. Nowowiejska 15/19, 00-665 Warsaw, PolandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Tomasz Gambin

Now published in GigaScience doi: 10.1093/gigascience/giaa097

Now published in GigaScience doi: 10.1093/gigascience/giz104

Now published in GigaScience doi: 10.1093/gigascience/giz091

Now published in GigaScience doi: 10.1093/gigascience/gix084 Jonathan A. Atkinson 1Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jonathan A. AtkinsonGuillaume Lobet 2Agrosphere, IBG3, Forschungszentrum Jülich, Jülich, Germany3Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Guillaume LobetManuel Noll 4InBios, Université de Liège, Liège, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePatrick E. Meyer 4InBios, Université de Liège, Liège, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMarcus Griffiths 1Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marcus GriffithsDarren M. Wells 1Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Darren M. Wells

Leaf shape among

BACKGROUND

Abstract

ABSTRACT

Abstract

Abstract

https://doi.org/10.1101/2020.06.06.138248

Abstract

ABSTRACT

Now published in GigaScience doi: 10.1093/gigascience/giab033 Colin Farrell 1Department of Human Genetics, University of California, Los Angeles, CA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Colin FarrellMichael Thompson 2Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAnela Tosevska 2Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAdewale Oyetunde 2Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMatteo Pellegrini 2Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: matteop@mcdb.ucla.edu

Now published in GigaScience doi: 10.1093/gigascience/giab029 Lucie A. Bergeron 1Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lucie A. BergeronFor correspondence: guojie.zhang@bio.ku.dk lucie.a.bergeron@gmail.comSøren Besenbacher 2Department of Molecular Medicine, Aarhus University, Aarhus, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJiao Zheng 4BGI-Shenzhen, Shenzhen 518083, Guangdong, China5BGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, Guangdong, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePanyi Li 4BGI-Shenzhen, Shenzhen 518083, Guangdong, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGeorge Pacheco 6Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Copenhagen, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMikkel-Holger S. Sinding 7Trinity College Dublin, Dublin, Ireland8Greenland Institute of Natural Resources, Nuuk, GreenlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMaria Kamilari 1Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteM. Thomas P. Gilbert 6Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Copenhagen, Denmark9Department of Natural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), NO-7491 Trondheim, NorwayFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMikkel H. Schierup 10Bioinformatics Research Centre, Aarhus University, Aarhus, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGuojie Zhang 1Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark4BGI-Shenzhen, Shenzhen 518083, Guangdong, China11State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China12Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming 650223, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: guojie.zhang@bio.ku.dk lucie.a.bergeron@gmail.com

Now published in GigaScience doi: 10.1093/gigascience/giab032 Guy M. Hagen 1UCCS BioFrontiers Center, University of Colorado at Colorado Springs, 1420 Austin Bluffs Parkway, Colorado Springs, Colorado, 80918Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Guy M. HagenFor correspondence: ghagen@uccs.eduJustin Bendesky 1UCCS BioFrontiers Center, University of Colorado at Colorado Springs, 1420 Austin Bluffs Parkway, Colorado Springs, Colorado, 80918Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRosa Machado 1UCCS BioFrontiers Center, University of Colorado at Colorado Springs, 1420 Austin Bluffs Parkway, Colorado Springs, Colorado, 80918Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteTram-Anh Nguyen 2George Mason University, 4400 University Drive, Fairfax, Virginia, 22030Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteTanmay Kumar 3Department of Computer Science and Software Engineering, California Polytechnic State University, San Luis Obispo, California, 93407Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJonathan Ventura 3Department of Computer Science and Software Engineering, California Polytechnic State University, San Luis Obispo, California, 93407Find this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giab022 Mikhail G. Dozmorov 2Department of Biostatistics, Virginia Commonwealth University, Richmond, VA, 23298, USA3Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mikhail G. DozmorovFor correspondence: Mikhail.Dozmorov@vcuhealth.org Joshua.Harrell@vcuhealth.orgKatarzyna M. Tyc 4VCU Massey Cancer Center, Richmond, VA, 23298, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Katarzyna M. TycNathan C. Sheffield 5Center for Public Health Genomics, University of Virginia, Charlottesville, VA, 22908, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nathan C. SheffieldDavid C. Boyd 3Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USA6Integrative Life Sciences Doctoral Program, Virginia Commonwealth University, Richmond, VA, 23298, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for David C. BoydAmy L. Olex 7C. Kenneth and Dianne Wright Center for Clinical and Translational Research, Virginia Commonwealth University, Richmond, VA, 23298, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Amy L. OlexJason Reed 4VCU Massey Cancer Center, Richmond, VA, 23298, USA8Department of Physics, Virginia Commonwealth University, Richmond, VA, 23220, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jason ReedJ. Chuck Harrell 3Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for J. Chuck HarrellFor correspondence: Mikhail.Dozmorov@vcuhealth.org Joshua.Harrell@vcuhealth.org

Now published in GigaScience doi: 10.1093/gigascience/giab023 Jeffrey B.S. Gaither Computational Genomics Group, The Institute for Genomic Medicine, Nationwide Children’s Hospital, Columbus, Ohio, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGrant E. Lammi Computational Genomics Group, The Institute for Genomic Medicine, Nationwide Children’s Hospital, Columbus, Ohio, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJames L. Li Computational Genomics Group, The Institute for Genomic Medicine, Nationwide Children’s Hospital, Columbus, Ohio, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid M. Gordon Computational Genomics Group, The Institute for Genomic Medicine, Nationwide Children’s Hospital, Columbus, Ohio, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHarkness C. Kuck Computational Genomics Group, The Institute for Genomic Medicine, Nationwide Children’s Hospital, Columbus, Ohio, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBenjamin J. Kelly Computational Genomics Group, The Institute for Genomic Medicine, Nationwide Children’s Hospital, Columbus, Ohio, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJames R. Fitch Computational Genomics Group, The Institute for Genomic Medicine, Nationwide Children’s Hospital, Columbus, Ohio, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePeter White Computational Genomics Group, The Institute for Genomic Medicine, Nationwide Children’s Hospital, Columbus, Ohio, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Peter WhiteFor correspondence: peter.white@nationwidechildrens.org

Now published in GigaScience doi: 10.1093/gigascience/giab020 Carolina Peñaloza 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlejandro P. Gutierrez 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, UK2Institute of Aquaculture, Faculty of Natural Sciences, University of Stirling, Stirling FK9 4LA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLel Eory 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShan Wang 3Haskin Shellfish Research Laboratory, Department of Marine and Coastal Sciences, Rutgers University, 6959 Miller Avenue, Port Norris, NJ 08349, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiming Guo 3Haskin Shellfish Research Laboratory, Department of Marine and Coastal Sciences, Rutgers University, 6959 Miller Avenue, Port Norris, NJ 08349, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlan L. Archibald 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTim P. Bean 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRoss D. Houston 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ross D. HoustonFor correspondence: ross.houston@roslin.ed.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giab018 Ben Blamey 1Department of Information Technology, Uppsala University, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ben BlameyFor correspondence: ben.blamey@it.uu.seSalman Toor 1Department of Information Technology, Uppsala University, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMartin Dahlö 2Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Sweden3Science for Life Laboratory, Uppsala University, Stockholm, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHåkan Wieslander 1Department of Information Technology, Uppsala University, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePhilip J Harrison 2Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Sweden3Science for Life Laboratory, Uppsala University, Stockholm, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteIda-Maria Sintorn 1Department of Information Technology, Uppsala University, Sweden3Science for Life Laboratory, Uppsala University, Stockholm, Sweden4Vironova AB, Stockholm, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlan Sabirsh 5Advanced Drug Delivery, Pharmaceutical Sciences, R&D, AstraZeneca, Gothenburg, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCarolina Wählby 1Department of Information Technology, Uppsala University, Sweden3Science for Life Laboratory, Uppsala University, Stockholm, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteOla Spjuth 2Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Sweden3Science for Life Laboratory, Uppsala University, Stockholm, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ola SpjuthAndreas Hellander 1Department of Information Technology, Uppsala University, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giab017 Anton Zamyatin 1Computer Technologies Laboratory, ITMO University, Saint Petersburg, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Anton ZamyatinPavel Avdeyev 2Department of Mathematics, The George Washington University, Washington, DC, USA3Computational Biology Institute, Milken Institute School of Public Health, The George Washington University, Washington, DC, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Pavel AvdeyevJiangtao Liang 4Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA5Fralin Life Sciences Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jiangtao LiangAtashi Sharma 5Fralin Life Sciences Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA6Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Atashi SharmaChujia Chen 5Fralin Life Sciences Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA6Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteVarvara Lukyanchikova 4Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA5Fralin Life Sciences Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA7Institute of Cytology and Genetics the Siberian Division of the Russian Academy of Sciences, Novosibirsk, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Varvara LukyanchikovaNikita Alexeev 1Computer Technologies Laboratory, ITMO University, Saint Petersburg, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nikita AlexeevZhijian Tu 5Fralin Life Sciences Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA6Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Zhijian TuMax A. Alekseyev 2Department of Mathematics, The George Washington University, Washington, DC, USA3Computational Biology Institute, Milken Institute School of Public Health, The George Washington University, Washington, DC, USA8Department of Biostatistics and Bioinformatics, Milken Institute School of Public Health, The George Washington University, Washington, DC, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Max A. AlekseyevIgor V. Sharakhov 4Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA5Fralin Life Sciences Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Igor V. SharakhovFor correspondence: igor@vt.edu

Now published in GigaScience doi: 10.1093/gigascience/giab011 Holly C. Beale 1UC Santa Cruz Molecular, Cell and Developmental Biology; UC Santa Cruz Genomics InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Holly C. BealeFor correspondence: hcbeale@ucsc.eduJacquelyn M. Roger 2UC Santa Cruz School of EngineeringFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMatthew A. Cattle 2UC Santa Cruz School of EngineeringFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLiam T. McKay 2UC Santa Cruz School of EngineeringFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDrew K. A. Thomson 2UC Santa Cruz School of EngineeringFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKatrina Learned 3UC Santa Cruz Genomics InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteA. Geoffrey Lyle 1UC Santa Cruz Molecular, Cell and Developmental Biology; UC Santa Cruz Genomics InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEllen T. Kephart 3UC Santa Cruz Genomics InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRob Currie 3UC Santa Cruz Genomics InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDu Linh Lam 3UC Santa Cruz Genomics InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLauren Sanders 1UC Santa Cruz Molecular, Cell and Developmental Biology; UC Santa Cruz Genomics InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJacob Pfeil 3UC Santa Cruz Genomics InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJohn Vivian 3UC Santa Cruz Genomics InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteIsabel Bjork 3UC Santa Cruz Genomics InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSofie R. Salama 4Dept. of Biomolecular Engineering, UC Santa Cruz Genomics Institute, Howard Hughes Medical InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid Haussler 4Dept. of Biomolecular Engineering, UC Santa Cruz Genomics Institute, Howard Hughes Medical InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteOlena M. Vaske 1UC Santa Cruz Molecular, Cell and Developmental Biology; UC Santa Cruz Genomics InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giab007 James K. Bonfield 1Wellcome Trust Sanger Institute Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for James K. BonfieldJohn Marshall 2University of Glasgow, Institute of Cancer SciencesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for John MarshallPetr Danecek 1Wellcome Trust Sanger Institute Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Petr DanecekHeng Li 3Dana-Farber Cancer Institute and Harvard UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Heng LiValeriu Ohan 4Wellcome Sanger InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Valeriu OhanAndrew Whitwham 4Wellcome Sanger InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Andrew WhitwhamFor correspondence: aw7@sanger.ac.ukThomas Keane 5EMBL-EBIFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Thomas KeaneRobert M. Davies 4Wellcome Sanger InstituteFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Robert M. Davies

Now published in GigaScience doi: 10.1093/gigascience/giab005 Ruichen Rong 1Quantitative Biomedical Research Center, Department of Population and Data Sciences, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShuang Jiang 2Department of Statistical Sciences, Southern Methodist University, Dallas, TX 75275, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLin Xu 1Quantitative Biomedical Research Center, Department of Population and Data Sciences, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGuanghua Xiao 1Quantitative Biomedical Research Center, Department of Population and Data Sciences, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USA3Harold C. Simmons Cancer Center, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USA4Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYang Xie 1Quantitative Biomedical Research Center, Department of Population and Data Sciences, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USA3Harold C. Simmons Cancer Center, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USA4Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDajiang J. Liu 5Institute for Personalized Medicine, College of Medicine, Pennsylvania State University, Hershey, Pennsylvania, 17033, USA6Division of Biostatistics, Department of Public Health Sciences, College of Medicine, Pennsylvania State University, Hershey, Pennsylvania, 17033, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteQiwei Li 7Department of Mathematical Sciences, The University of Texas at Dallas, Dallas, Texas, 75080, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiaowei Zhan 1Quantitative Biomedical Research Center, Department of Population and Data Sciences, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USA8Center for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: Xiaowei.Zhan@UTSouthwestern.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa162 Xinying Fang 1Department of Biostatistics, School of Public Health, University of Michigan, Ann Arbor, MI, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Xinying FangYu Liu 2Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZhijie Ren 3Department of Electric Engineering and Computer Science, University of Michigan, Ann Arbor, MI, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYuheng Du 1Department of Biostatistics, School of Public Health, University of Michigan, Ann Arbor, MI, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteQianhui Huang 1Department of Biostatistics, School of Public Health, University of Michigan, Ann Arbor, MI, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLana X. Garmire 2Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lana X. GarmireFor correspondence: lgarmire@med.umich.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa155 Nikhil Bhagwat 1Montreal Neurological Institute Hospital, McGill University, Montreal, QC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: nikhil153@gmail.com jean-baptiste.poline@mcgill.caAmadou Barry 2Lady Davis Institute for Medical Research, McGill University, Montreal, QC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteErin W. Dickie 3Kimel Family Translational Imaging-Genetics Research Lab, CAMH, Toronto, ON, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShawn T. Brown 1Montreal Neurological Institute Hospital, McGill University, Montreal, QC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGabriel A. Devenyi 4Computational Brain Anatomy Laboratory, Douglas Mental Health Institute, Verdun, QC, Canada5Department of Psychiatry, McGill University, Montreal, QC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKoji Hatano 1Montreal Neurological Institute Hospital, McGill University, Montreal, QC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteElizabeth DuPre 1Montreal Neurological Institute Hospital, McGill University, Montreal, QC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlain Dagher 1Montreal Neurological Institute Hospital, McGill University, Montreal, QC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteM. Mallar Chakravarty 4Computational Brain Anatomy Laboratory, Douglas Mental Health Institute, Verdun, QC, Canada5Department of Psychiatry, McGill University, Montreal, QC, Canada10Department of Biomedical Engineering, McGill UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCelia M. T. Greenwood 2Lady Davis Institute for Medical Research, McGill University, Montreal, QC, Canada8Ludmer Centre for Neuroinformatics Mental Health, McGill University, Montreal, QC, Canada9Gerald Bronfman Department of Oncology; Department of Epidemiology, Biostatistics Occupational Health; Department of Human Genetics, McGill University, Montreal, QC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBratislav Misic 1Montreal Neurological Institute Hospital, McGill University, Montreal, QC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid N. Kennedy 7Child and Adolescent Neurodevelopment Initiative, University of Massachusetts, Worcester, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJean-Baptiste Poline 1Montreal Neurological Institute Hospital, McGill University, Montreal, QC, Canada6Department of Neurology and Neurosurgery, McGill University, Montreal, QC, Canada8Ludmer Centre for Neuroinformatics Mental Health, McGill University, Montreal, QC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: nikhil153@gmail.com jean-baptiste.poline@mcgill.ca

Abstract

Now published in GigaScience doi: 10.1093/gigascience/giaa154 Satria A. Kautsar 1Bioinformatics Group, Wageningen University, the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Satria A. KautsarJustin J. J. van der Hooft 1Bioinformatics Group, Wageningen University, the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Justin J. J. van der HooftDick de Ridder 1Bioinformatics Group, Wageningen University, the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Dick de RidderMarnix H. Medema 1Bioinformatics Group, Wageningen University, the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marnix H. MedemaFor correspondence: marnix.medema@wur.nl

Now published in GigaScience doi: 10.1093/gigascience/giaa159 Taras K. Oleksyk 1Department of Biological Sciences, Uzhhorod National University, Uzhhorod 88000, Ukraine2Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA3Departamento de Biología, Universidad de Puerto Rico, Mayagüez, 00682, Puerto RicoFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Taras K. OleksykFor correspondence: oleksyk@oakland.edu remills@umich.eduWalter W. Wolfsberger 1Department of Biological Sciences, Uzhhorod National University, Uzhhorod 88000, Ukraine2Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA3Departamento de Biología, Universidad de Puerto Rico, Mayagüez, 00682, Puerto RicoFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlexandra Weber 4Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, 48109, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKhrystyna Shchubelka 2Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA3Departamento de Biología, Universidad de Puerto Rico, Mayagüez, 00682, Puerto Rico5Department of Medicine, Uzhhorod National University, Uzhhorod 88000, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteOlga T. Oleksyk 6A. Novak Transcarpathian Regional Clinical Hospital, Uzhhorod 88000, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteOlga Levchuk 7Astra Dia Inc., Uzhhorod 88000, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlla Patrus 7Astra Dia Inc., Uzhhorod 88000, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNelya Lazar 7Astra Dia Inc., Uzhhorod 88000, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStephanie O. Castro-Marquez 2Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA3Departamento de Biología, Universidad de Puerto Rico, Mayagüez, 00682, Puerto RicoFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePatricia Boldyzhar 5Department of Medicine, Uzhhorod National University, Uzhhorod 88000, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlina Urbanovych 8Lviv National Medical University, Lviv 79010, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKateryna Malyar 10I.I.Mechnikov Dnipro Regional Clinical Hospital, Dnipro 49000, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSvitlana Chervyakova 11Chernihiv Regional Hospital, Chernihiv 14039, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteOlena Podoroha 12Sumy Diagnostic Center, Sumy 40000, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNatalia Kovalchuk 13Rivne Regional Specialized Hospital of Radiation Protection, Rivne 33028, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYaroslava Hasynets 1Department of Biological Sciences, Uzhhorod National University, Uzhhorod 88000, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJuan L. Rodriguez-Flores 14Department of Genetic Medicine, Weill Cornell Medical College, New York, NY 10065, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSarah Medley 2Department of Biological Sciences, Oakland University, Rochester, MI 48309, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFabia Battistuzzi 2Department of Biological Sciences, Oakland University, Rochester, MI 48309, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRyan Liu 15BGI, Shenzhen CHINAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYong Hou 15BGI, Shenzhen CHINAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSiru Chen 15BGI, Shenzhen CHINAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHuanming Yang 15BGI, Shenzhen CHINAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMeredith Yeager 16Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD 20892, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichael Dean 16Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD 20892, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael DeanRyan E. Mills 17Department of Human Genetics, University of Michigan, Ann Arbor, MI, 48109, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: oleksyk@oakland.edu remills@umich.eduVolodymyr Smolanka 5Department of Medicine, Uzhhorod National University, Uzhhorod 88000, UkraineFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa152 Anup Kumar BioInformatics lab, Department of Computer Science, University of Freiburg, Freiburg, 79110, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBjörn Grüning BioInformatics lab, Department of Computer Science, University of Freiburg, Freiburg, 79110, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: gruening@informatik.uni-freiburg.deRolf Backofen BioInformatics lab, Department of Computer Science, University of Freiburg, Freiburg, 79110, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa151 Matthew D Young 1Wellcome Trust Sanger Institute, University of CambridgeFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: my4@sanger.ac.ukSam Behjati 1Wellcome Trust Sanger Institute, University of Cambridge2Cambridge University Hospitals NHS Foundation Trust, University of Cambridge3Department of Paediatrics, University of CambridgeFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa137 Mathieu Rousseau-Gueutin 1IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mathieu Rousseau-GueutinFor correspondence: jmaury@genoscope.cns.frCaroline Belser 2Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Caroline BelserCorinne Da Silva 2Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Corinne Da SilvaGautier Richard 1IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gautier RichardBenjamin Istace 2Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Benjamin IstaceCorinne Cruaud 3Genoscope, Institut François Jacob, Commissariat à l’Energie Atomique (CEA), Université Paris-Saclay, Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCyril Falentin 1IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Cyril FalentinFranz Boideau 1IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJulien Boutte 1IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRegine Delourme 1IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Regine DelourmeGwenaëlle Deniot 1IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStefan Engelen 2Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Stefan EngelenJulie Ferreira de Carvalho 1IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Julie Ferreira de CarvalhoArnaud Lemainque 3Genoscope, Institut François Jacob, Commissariat à l’Energie Atomique (CEA), Université Paris-Saclay, Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLoeiz Maillet 1IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Loeiz MailletJérôme Morice 1IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePatrick Wincker 2Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Patrick WinckerFrance Denoeud 2Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for France DenoeudAnne-Marie Chèvre 1IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Anne-Marie ChèvreJean-Marc Aury 2Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jean-Marc AuryFor correspondence: jmaury@genoscope.cns.fr

Now published in GigaScience doi: 10.1093/gigascience/giaa123 Dandan Lang 1GrandOmics Biosciences, Beijing, 102200, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Dandan LangShilai Zhang 2State Key laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Research Center for Perennial Rice Engineering and Technology of Yunnan, School of Agriculture, Yunnan University, Kunming, Yunnan, 650091, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePingping Ren 1GrandOmics Biosciences, Beijing, 102200, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFan Liang 1GrandOmics Biosciences, Beijing, 102200, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZongyi Sun 1GrandOmics Biosciences, Beijing, 102200, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGuanliang Meng 1GrandOmics Biosciences, Beijing, 102200, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Guanliang MengYuntao Tan 1GrandOmics Biosciences, Beijing, 102200, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJiang Hu 1GrandOmics Biosciences, Beijing, 102200, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiaokang Li Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteQihua Lai Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteLingling Han 1GrandOmics Biosciences, Beijing, 102200, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDepeng Wang 1GrandOmics Biosciences, Beijing, 102200, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFengyi Hu 2State Key laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Research Center for Perennial Rice Engineering and Technology of Yunnan, School of Agriculture, Yunnan University, Kunming, Yunnan, 650091, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWen Wang 3State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, 650223 Kunming, Yunnan, China4Center for Ecological and Environmental Sciences, Key Laboratory for Space Bioscience & Biotechnology, Northwestern Polytechnical University, 710072 Xi’an, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: liushanlin@grandomics.com wwang@mail.kiz.ac.cnShanlin Liu 1GrandOmics Biosciences, Beijing, 102200, China5Department of Entomology, College of Plant Protection, China Agricultural University, 100193 Beijing, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Shanlin LiuFor correspondence: liushanlin@grandomics.com wwang@mail.kiz.ac.cn

Now published in GigaScience doi: 10.1093/gigascience/giaa122 Lukas M. Simon 1Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lukas M. SimonFor correspondence: lukas.simon@uth.tmc.edu zhongming.zhao@uth.tmc.eduFangfang Yan 1Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZhongming Zhao 1Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA2Human Genetics Center, School of Public Health, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA3MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences, Houston, TX 77030, USA4Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN 37203, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: lukas.simon@uth.tmc.edu zhongming.zhao@uth.tmc.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa138 Aspyn Palatnick 1Cold Spring Harbor High School, Cold Spring Harbor, NY 117242Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 117243University of Pennsylvania, Philadelphia, PA 19104Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteBin Zhou 4Department of Biology, New York University, New York, NY 10003Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteElodie Ghedin 4Department of Biology, New York University, New York, NY 100035Department of Epidemiology, School of Global Public Health, New York, NY 10003Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichael C. Schatz 2Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 117246Departments of Computer Science and Biology, Johns Hopkins University, Baltimore MD, 21211Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael C. SchatzFor correspondence: mschatz@cshl.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa134 Sanjit Singh Batra 1Computer Science Division, University of California, Berkeley, CA 94720Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichal Levy-Sakin 2Cardiovascular Research Institute, University of California San Francisco, San Francisco, CA 94143Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJacqueline Robinson 3Institute for Human Genetics, University of California San Francisco, San Francisco, CA 94143Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJoseph Guillory 4Department of Molecular Biology, Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteSteffen Durinck 4Department of Molecular Biology, Genentech, Inc., 1 DNA Way, South San Francisco, CA 940805Bioinformatics and Computational Biology Department, Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePui-Yan Kwok 2Cardiovascular Research Institute, University of California San Francisco, San Francisco, CA 941433Institute for Human Genetics, University of California San Francisco, San Francisco, CA 94143Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteLaura A. Cox 6Center for Precision Medicine, Department of Internal Medicine, Section of Molecular Medicine, Wake Forest School of Medicine, Winston-Salem, NC 271017Southwest National Primate Research Center, Texas Biomedical Research Institute, San Antonio, TX 78245Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteSomasekar Seshagiri 4Department of Molecular Biology, Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteYun S. Song 1Computer Science Division, University of California, Berkeley, CA 947208Department of Statistics, University of California, Berkeley, CA 947209Chan Zuckerberg Biohub, San Francisco, CA 94158Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJeffrey D. Wall 3Institute for Human Genetics, University of California San Francisco, San Francisco, CA 94143Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: jeff.wall@ucsf.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa135 Christina Weiβbecker 1Helmholtz Centre for Environmental Research GmbH - UFZ, Department of Soil EcologyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Christina WeiβbeckerBeatrix Schnabel 1Helmholtz Centre for Environmental Research GmbH - UFZ, Department of Soil EcologyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAnna Heintz-Buschart 2German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Bioinformatics Unit1Helmholtz Centre for Environmental Research GmbH - UFZ, Department of Soil EcologyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Anna Heintz-BuschartFor correspondence: anna.heintz-buschart@ufz.de

Now published in GigaScience doi: 10.1093/gigascience/giaa127 Miroslav Kratochvíl 1Institute of Organic Chemistry and Biochemistry, Prague, Czech Republic2Department of Software Engineering, Faculty of Mathematics and Physics, Charles university, Prague, Czech RepublicFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Miroslav KratochvílFor correspondence: exa.exa@gmail.comOliver Hunewald 3Department of Infection and Immunity, Luxembourg Institute of Health, Esch-sur-Alzette, LuxembourgFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLaurent Heirendt 4Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, Belvaux, LuxembourgFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Laurent HeirendtVasco Verissimo 4Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, Belvaux, LuxembourgFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJiří Vondrášek 1Institute of Organic Chemistry and Biochemistry, Prague, Czech RepublicFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jiří VondrášekVenkata P. Satagopam 4Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, Belvaux, Luxembourg5ELIXIR Luxembourg, University of Luxembourg, Campus Belval, Belvaux, LuxembourgFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Venkata P. SatagopamReinhard Schneider 4Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, Belvaux, Luxembourg5ELIXIR Luxembourg, University of Luxembourg, Campus Belval, Belvaux, LuxembourgFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Reinhard SchneiderChristophe Trefois 4Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, Belvaux, Luxembourg5ELIXIR Luxembourg, University of Luxembourg, Campus Belval, Belvaux, LuxembourgFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Christophe TrefoisMarkus Ollert 3Department of Infection and Immunity, Luxembourg Institute of Health, Esch-sur-Alzette, Luxembourg6Department of Dermatology and Allergy Center, Odense Research Center for Anaphylaxis, Odense University Hospital, University of Southern Denmark, Odense, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa117 Alexandra J. Lee 1Genomics and Computational Biology Graduate Program, University of Pennsylvania, Philadelphia, PA, USA2Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alexandra J. LeeYoSon Park 2Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for YoSon ParkGeorgia Doing 3Department of Microbiology and Immunology, Geisel School of Medicine, Dartmouth, Hanover, NH, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Georgia DoingDeborah A. Hogan 3Department of Microbiology and Immunology, Geisel School of Medicine, Dartmouth, Hanover, NH, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Deborah A. HoganCasey S. Greene 2Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA4Childhood Cancer Data Lab, Alex’s Lemonade Stand Foundation, Philadelphia, PA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Casey S. GreeneFor correspondence: greenescientist@gmail.com

Abstract

Now published in GigaScience doi: 10.1093/gigascience/giaa109 Francesca Pia Caruso 1Department of Science and Technologies, Università degli Studi del Sannio, 82100, Benevento, Italy2Bioinformatics Lab, BIOGEM, Ariano Irpino, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLuciano Garofano 1Department of Science and Technologies, Università degli Studi del Sannio, 82100, Benevento, Italy3Institute for Cancer Genetics, Columbia University, New York (NY), USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFulvio D’Angelo 2Bioinformatics Lab, BIOGEM, Ariano Irpino, Italy3Institute for Cancer Genetics, Columbia University, New York (NY), USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKai Yu 4Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing 100871, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFuchou Tang 4Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing 100871, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJinzhou Yuan 5Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA6Department of Biochemistry and Molecular Biophysics, Columbia University Irving Medical Center, New York, NY, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJing Zhang 3Institute for Cancer Genetics, Columbia University, New York (NY), USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLuigi Cerulo 1Department of Science and Technologies, Università degli Studi del Sannio, 82100, Benevento, Italy2Bioinformatics Lab, BIOGEM, Ariano Irpino, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavide Bedognetti 7Cancer Program, Sidra Medicine, Doha, QatarFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePeter A. Sims 5Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA6Department of Biochemistry and Molecular Biophysics, Columbia University Irving Medical Center, New York, NY, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMario Suvà 8Department of Pathology and Center for Cancer Research, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA9Broad Institute of Harvard and MIT, Cambridge, MA 02142, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiao-Dong Su 4Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing 100871, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAnna Lasorella 3Institute for Cancer Genetics, Columbia University, New York (NY), USA10Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAntonio Iavarone 3Institute for Cancer Genetics, Columbia University, New York (NY), USA10Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA11Department of Neurology, Columbia University Medical Center, New York, NY, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichele Ceccarelli 2Bioinformatics Lab, BIOGEM, Ariano Irpino, Italy12Department of Electrical Engineering and Information Technology (DIETI), University of Naples “Federico II”, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: michele.ceccarelli@unina.it

Now published in GigaScience doi: 10.1093/gigascience/giaa085 Dima Kagan 1Department of Software and Information Systems Engineering, Ben-Gurion University of the NegevFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Dima KaganFor correspondence: kagandi@post.bgu.ac.ilJacob Moran-Gilad 2Department of Health Systems Management, Faculty of Health Sciences, Ben-Gurion University of the NegevFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jacob Moran-GiladMichael Fire 1Department of Software and Information Systems Engineering, Ben-Gurion University of the NegevFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael Fire

Now published in GigaScience doi: 10.1093/gigascience/giaa076 Xiang Zhou 1School of Data and Computer Science, Sun Yat-sen University, Guangzhou, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHua Chai 1School of Data and Computer Science, Sun Yat-sen University, Guangzhou, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHuiying Zhao 2Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteChing-Hsing Luo 1School of Data and Computer Science, Sun Yat-sen University, Guangzhou, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYuedong Yang 1School of Data and Computer Science, Sun Yat-sen University, Guangzhou, China3Key Laboratory of Machine Intelligence and Advanced Computing (Sun Yat-sen University), Ministry of Education, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Yuedong YangFor correspondence: yangyd25@mail.sysu.edu.cn

Now published in GigaScience doi: 10.1093/gigascience/giaa072 Kirill Kryukov Department of Molecular Life Science, Tokai University School of Medicine, Isehara, Kanagawa 259-1193, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: kkryukov@gmail.comMahoko Takahashi Ueda Department of Molecular Life Science, Tokai University School of Medicine, Isehara, Kanagawa 259-1193, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSo Nakagawa Department of Molecular Life Science, Tokai University School of Medicine, Isehara, Kanagawa 259-1193, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTadashi Imanishi Department of Molecular Life Science, Tokai University School of Medicine, Isehara, Kanagawa 259-1193, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa070 Fu-Hao Lu 1Department Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNeil McKenzie 1Department Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMing-Cheng Luo 3Department of Plant Sciences, University of California, One Shields Avenue, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAnthony Hall 2Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichael W Bevan 1Department Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: michael.bevan@jic.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giaa067 Lisa K. Johnson 1Department of Environmental Toxicology, University of California, Davis2Department of Population Health & Reproduction, School of Veterinary Medicine, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lisa K. JohnsonRuta Sahasrabudhe 3DNA Technologies Core, Genome Center, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTony Gill 1Department of Environmental Toxicology, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJennifer Roach 1Department of Environmental Toxicology, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLutz Froenicke 3DNA Technologies Core, Genome Center, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteC. Titus Brown 2Department of Population Health & Reproduction, School of Veterinary Medicine, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for C. Titus BrownAndrew Whitehead 1Department of Environmental Toxicology, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: awhitehead@ucdavis.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa062 Victor A. Padilha 1Institute of Mathematics and Computer Sciences, University of São Paulo, Av. Trabalhador São Carlense 400, São Carlos, SP, 13564-002, BrazilFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteOmer S. Alkhnbashi 2Chair of Bioinformatics, University of Freiburg, Georges-Köhler-Allee 101, Freiburg, 79110, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShiraz A. Shah 3Danish Archaea Centre, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, Copenhagen, DK-2200, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAndré C. P. L. F. de Carvalho 1Institute of Mathematics and Computer Sciences, University of São Paulo, Av. Trabalhador São Carlense 400, São Carlos, SP, 13564-002, BrazilFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRolf Backofen 2Chair of Bioinformatics, University of Freiburg, Georges-Köhler-Allee 101, Freiburg, 79110, Germany4Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Georges-Köhler-Allee 101, Freiburg, 79110, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: backofen@informatik.uni-freiburg.de

Now published in GigaScience doi: 10.1093/gigascience/giaa051 Amanda Warr 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteNabeel Affara 2Department of Pathology, University of Cambridge, Cambridge CB2 1QP, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteBronwen Aken 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteH. Beiki 4Department of Animal Science, Iowa State University, Ames, Iowa, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDerek M. Bickhart 5Dairy Forage Research Center, USDA-ARS, Madison, Wisconsin, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteKonstantinos Billis 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteWilliam Chow 6Wellcome Sanger Institute, Cambridge, CB10 1SA, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteLel Eory 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteHeather A. Finlayson 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePaul Flicek 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteCarlos G. Girón 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDarren K. Griffin 7School of Biosciences, University of Kent, Canterbury CT2 7AF, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRichard Hall 8Pacific Biosciences, Menlo Park, California, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteGreg Hannum 9Denovium Inc., San Diego, California, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteThibaut Hourlier 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteKerstin Howe 6Wellcome Sanger Institute, Cambridge, CB10 1SA, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid A. Hume 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteOsagie Izuogu 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteKristi Kim 8Pacific Biosciences, Menlo Park, California, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteSergey Koren 10Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, Maryland, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteHaibou Liu 4Department of Animal Science, Iowa State University, Ames, Iowa, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteNancy Manchanda 11Bioinformatics and Computational Biology Program, Iowa State University, Ames, Iowa, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFergal J. Martin 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDan J. Nonneman 12USDA-ARS U.S. Meat Animal Research Center, Clay Center, Nebraska 68933, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRebecca E. O’Connor 7School of Biosciences, University of Kent, Canterbury CT2 7AF, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteAdam M. Phillippy 10Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, Maryland, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteGary A. Rohrer 12USDA-ARS U.S. Meat Animal Research Center, Clay Center, Nebraska 68933, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteBenjamin D. Rosen 13Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, Maryland, U.S.AFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLaurie A. Rund 14Department of Animal Sciences, University of Illinois, Urbana, Illinois, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteCarole A. Sargent 2Department of Pathology, University of Cambridge, Cambridge CB2 1QP, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteLawrence B. Schook 14Department of Animal Sciences, University of Illinois, Urbana, Illinois, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteSteven G. Schroeder 13Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, Maryland, U.S.AFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAriel S. Schwartz 9Denovium Inc., San Diego, California, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteBen M. Skinner 2Department of Pathology, University of Cambridge, Cambridge CB2 1QP, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRichard Talbot 15Edinburgh Genomics, University of Edinburgh, Edinburgh EH9 3FL, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteElizabeth Tseng 8Pacific Biosciences, Menlo Park, California, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteChristopher K. Tuggle 4Department of Animal Science, Iowa State University, Ames, Iowa, U.S.A.11Bioinformatics and Computational Biology Program, Iowa State University, Ames, Iowa, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMick Watson 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: alan.archibald@roslin.ed.ac.uk tim.smith@ARS.USDA.GOV mick.watson@roslin.ed.ac.ukTimothy P. L. Smith 12USDA-ARS U.S. Meat Animal Research Center, Clay Center, Nebraska 68933, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: alan.archibald@roslin.ed.ac.uk tim.smith@ARS.USDA.GOV mick.watson@roslin.ed.ac.ukAlan L. Archibald 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alan L. ArchibaldFor correspondence: alan.archibald@roslin.ed.ac.uk tim.smith@ARS.USDA.GOV mick.watson@roslin.ed.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giaa061 Saber Hafezqorani 1Canada’s Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC, Canada2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Saber HafezqoraniChen Yang 1Canada’s Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC, Canada2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKa Ming Nip 1Canada’s Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC, Canada2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ka Ming NipRené L Warren 1Canada’s Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for René L WarrenInanc Birol 1Canada’s Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC, Canada3Department of Medical Genetics, University of British Columbia, Vancouver, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Inanc BirolFor correspondence: ibirol@bcgsc.ca

Now published in GigaScience doi: 10.1093/gigascience/giaa060 Wenxi Wang 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZihao Wang 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXintong Li 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZhongfu Ni 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZhaorong Hu 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMingming Xin 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHuiru Peng 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYingyin Yao 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteQixin Sun 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWeilong Guo 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: guoweilong@cau.edu.cn

Now published in GigaScience doi: 10.1093/gigascience/giaa044 Benjamin B. Chu 1Department of Computational Medicine, UCLA, Los Angeles, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Benjamin B. ChuKevin L. Keys 2Department of Medicine, University of California, San Francisco, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kevin L. KeysChristopher A. German 3Department of Biostatistics, Fielding School of Public Health at UCLA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHua Zhou 3Department of Biostatistics, Fielding School of Public Health at UCLA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Hua ZhouJin J. Zhou 4Division of Epidemiology and Biostatistics, University of Arizona, Tucson, AZ 85724, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEric Sobel 1Department of Computational Medicine, UCLA, Los Angeles, USA5Department of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJanet S. Sinsheimer 1Department of Computational Medicine, UCLA, Los Angeles, USA5Department of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Janet S. SinsheimerFor correspondence: jsinshei@ucla.eduKenneth Lange 1Department of Computational Medicine, UCLA, Los Angeles, USA5Department of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kenneth LangeFor correspondence: klange@ucla.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa057 Junhua Li 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China3School of Bioscience & Bioengineering, South China University of Technology, Guangzhou, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Junhua LiHuanzi Zhong 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Huanzi ZhongYuliaxis Ramayo-Caldas 4INRA, Institut National de la Recherche Agronomique, Génétique Animale et Biologie Intégrative, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France5Animal Breeding and Genetics Program, Institute for Research and Technology in Food and Agriculture (IRTA), Torre Marimon, Caldes de Montbui, 08140, SpainFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNicolas Terrapon 6CNRS UMR 7257, Aix-Marseille University, 13288 Marseille, France7INRA, USC 1408 AFMB, 13288 Marseille, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteVincent Lombard 6CNRS UMR 7257, Aix-Marseille University, 13288 Marseille, France7INRA, USC 1408 AFMB, 13288 Marseille, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGabrielle Potocki-Veronese 8LISBP, Universite de Toulouse, CNRS, INRA, INSA, 31077, Toulouse, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJordi Estellé 4INRA, Institut National de la Recherche Agronomique, Génétique Animale et Biologie Intégrative, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMilka Popova 9INRA, UMR Herbivores, Université Clermont Auvergne, VetAgro Sup, F-63122 Saint-Genès Champanelle, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZiyi Yang 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHui Zhang 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFang Li 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShanmei Tang 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWeineng Chen 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBing Chen 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJiyang Li 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJing Guo 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCécile Martin 9INRA, UMR Herbivores, Université Clermont Auvergne, VetAgro Sup, F-63122 Saint-Genès Champanelle, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEmmanuelle Maguin 10INRA, Micalis Institute, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXun Xu 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHuanming Yang 1BGI-Shenzhen, Shenzhen 518083, China11James D. Watson Institute of Genome Sciences, Hangzhou 310058, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJian Wang 1BGI-Shenzhen, Shenzhen 518083, China11James D. Watson Institute of Genome Sciences, Hangzhou 310058, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLise Madsen 1BGI-Shenzhen, Shenzhen 518083, China12Institute of Marine Research (IMR), Postboks 1870 Nordnes, 5817 Bergen, Norway13Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen, 2100 Copenhagen Ø, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKarsten Kristiansen 1BGI-Shenzhen, Shenzhen 518083, China13Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen, 2100 Copenhagen Ø, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: diego.morgavi@inra.fr stanislav.ehrlich@inra.fr kk@bio.ku.dkBernard Henrissat 6CNRS UMR 7257, Aix-Marseille University, 13288 Marseille, France7INRA, USC 1408 AFMB, 13288 Marseille, France14Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi ArabiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStanislav D. Ehrlich 15MGP MetaGenoPolis, INRA, Université Paris-Saclay, 78350 Jouy en Josas, France16Centre for Host Microbiome Interactions, Dental Institute, King’s College London, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: diego.morgavi@inra.fr stanislav.ehrlich@inra.fr kk@bio.ku.dkDiego P. Morgavi 9INRA, UMR Herbivores, Université Clermont Auvergne, VetAgro Sup, F-63122 Saint-Genès Champanelle, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Diego P. MorgaviFor correspondence: diego.morgavi@inra.fr stanislav.ehrlich@inra.fr kk@bio.ku.dk

Now published in GigaScience doi: 10.1093/gigascience/giaa052 Alessandro Petrini 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: alessandro.petrini@unimi.itMarco Mesiti 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMax Schubach 2Berlin Institute of Health (BIH), Berlin, Germany3Charité – Universitätsmedizin Berlin, Berlin, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMarco Frasca 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDaniel Danis 4The Jackson Laboratory for Genomic Medicine, Farmington CT, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMatteo Re 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGiuliano Grossi 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLuca Cappelletti 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTiziana Castrignanò 5CINECA, SCAI SuperComputing Applications and Innovation Department, Roma, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePeter N. Robinson 4The Jackson Laboratory for Genomic Medicine, Farmington CT, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Peter N. RobinsonGiorgio Valentini 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa050 Annarita Marrano 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: amarrano@ucdavis.eduMonica Britton 2Bioinformatics Core Facility, Genome Center, University of California Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePaulo A. Zaini 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAleksey V. Zimin 3Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRachael E. Workman 3Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDaniela Puiu 4Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University, Baltimore, MD 21205, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLuca Bianco 5Research and Innovation Center, Department of Genomics and Biology of Fruit Crops, Fondazione E Mach, San Michele all’ Adige (TN) 38010, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Luca BiancoErica Adele Di Pierro 5Research and Innovation Center, Department of Genomics and Biology of Fruit Crops, Fondazione E Mach, San Michele all’ Adige (TN) 38010, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBrian J. Allen 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSandeep Chakraborty 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichela Troggio 5Research and Innovation Center, Department of Genomics and Biology of Fruit Crops, Fondazione E Mach, San Michele all’ Adige (TN) 38010, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCharles A. Leslie 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWinston Timp 3Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Winston TimpAbhaya Dandekar 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSteven L. Salzberg 3Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA4Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University, Baltimore, MD 21205, USA6Departments of Computer Science and Biostatistics, Johns Hopkins University, Baltimore, MD 21218Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid B. Neale 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa048 Morteza Hosseini 1IEETA/DETI, University of Aveiro, 3810-193 Aveiro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: seyedmorteza@ua.ptDiogo Pratas 1IEETA/DETI, University of Aveiro, 3810-193 Aveiro, Portugal2Department of Virology, University of Helsinki, 00100 Helsinki, FinlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBurkhard Morgenstern 3Department of Bioinformatics, University of Göttingen, Goldschmidtstr. 1, 37077 Göttingen, Germany4Göttingen Center of Molecular Biosciences (GZMB), Justus-von-Liebig-Weg 11, 37077 Göttingen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteArmando J. Pinho 1IEETA/DETI, University of Aveiro, 3810-193 Aveiro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Abstract

Now published in GigaScience doi: 10.1093/gigascience/giaa045 Graham J Etherington The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Graham J EtheringtonFor correspondence: graham.etherington@earlham.ac.uk Federica.dipalma@earlham.ac.ukDarren Heavens The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Darren HeavensDavid Baker The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAshleigh Lister The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ashleigh ListerRose McNelly The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGonzalo Garcia The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gonzalo GarciaBernardo Clavijo The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Bernardo ClavijoIain Macaulay The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Iain MacaulayWilfried Haerty The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Wilfried HaertyFederica Di Palma The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Federica Di PalmaFor correspondence: graham.etherington@earlham.ac.uk Federica.dipalma@earlham.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giaa041 Alejandra N. Gonzalez-Beltran 1Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UK2Scientific Computing Department, Rutherford Appleton Laboratory, Science and Technology Facilities Council, Didcot, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alejandra N. Gonzalez-BeltranPaola Masuzzo 3VIB-UGent Center for Medical Biotechnology, Ghent, Belgium4Department of Biomolecular Medicine, Ghent University, Ghent, Belgium5Institute for Globally Distributed Open Research and Education (IGDORE), Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Paola MasuzzoChristophe Ampe 4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Christophe AmpeGert-Jan Bakker 6Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gert-Jan BakkerSébastien Besson 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sébastien BessonRobert H. Eibl 8German Cancer Research Center, DKFZ Alumni Association, Heidelberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Robert H. EiblPeter Friedl 6Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands9David H. Koch Center for Applied Genitourinary Medicine, UT MD Anderson Cancer Center, Houston, TX, USA10Cancer Genomics Center, Utrecht, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Peter FriedlMatthias Gunzer 11Institute for Experimental Immunology and Imaging, University Hospital, University Duisburg-Essen, Essen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Matthias GunzerMark Kittisopikul 12Department of Biophysics, UT Southwestern Medical Center, Dallas, TX, USA13Department of Cell and Developmental Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mark KittisopikulSylvia E. Le Dévédec 14Division of Drug Discovery and Safety, Leiden Academic Centre for Drug Research, Leiden University, the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sylvia E. Le DévédecSimone Leo 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UK15Center for Advanced Studies, Research, and Development in Sardinia (CRS4), Pula(CA), ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Simone LeoJosh Moore 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Josh MooreYael Paran 16IDEA Bio-Medical Ltd, Rehovot, IsraelFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Yael ParanJaime Prilusky 17Life Science Core Facilities, Weizmann Institute of Science, Rehovot, IsraelFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jaime PriluskyPhilippe Rocca-Serra 1Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Philippe Rocca-SerraPhilippe Roudot 18Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Philippe RoudotMarc Schuster 11Institute for Experimental Immunology and Imaging, University Hospital, University Duisburg-Essen, Essen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marc SchusterGwendolien Sergeant 4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gwendolien SergeantStaffan Strömblad 19Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Staffan StrömbladJason R. Swedlow 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jason R. SwedlowMerijn van Erp 6Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Merijn van ErpMarleen Van Troys 4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marleen Van TroysAssaf Zaritsky 20Department of Software and Information Systems Engineering, Ben-Gurion University of the Negev, Beer-Sheva, IsraelFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Assaf ZaritskySusanna-Assunta Sansone 1Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Susanna-Assunta SansoneFor correspondence: susanna-assunta.sansone@oerc.ox.ac.uk lennart.martens@vib-ugent.beLennart Martens 3VIB-UGent Center for Medical Biotechnology, Ghent, Belgium4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lennart MartensFor correspondence: susanna-assunta.sansone@oerc.ox.ac.uk lennart.martens@vib-ugent.be

Now published in GigaScience doi: 10.1093/gigascience/giaa041 Alejandra N. Gonzalez-Beltran 1Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UK2Scientific Computing Department, Rutherford Appleton Laboratory, Science and Technology Facilities Council, Didcot, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alejandra N. Gonzalez-BeltranPaola Masuzzo 3VIB-UGent Center for Medical Biotechnology, Ghent, Belgium4Department of Biomolecular Medicine, Ghent University, Ghent, Belgium5Institute for Globally Distributed Open Research and Education (IGDORE), Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Paola MasuzzoChristophe Ampe 4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Christophe AmpeGert-Jan Bakker 6Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gert-Jan BakkerSébastien Besson 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sébastien BessonRobert H. Eibl 8German Cancer Research Center, DKFZ Alumni Association, Heidelberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Robert H. EiblPeter Friedl 6Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands9David H. Koch Center for Applied Genitourinary Medicine, UT MD Anderson Cancer Center, Houston, TX, USA10Cancer Genomics Center, Utrecht, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Peter FriedlMatthias Gunzer 11Institute for Experimental Immunology and Imaging, University Hospital, University Duisburg-Essen, Essen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Matthias GunzerMark Kittisopikul 12Department of Biophysics, UT Southwestern Medical Center, Dallas, TX, USA13Department of Cell and Developmental Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mark KittisopikulSylvia E. Le Dévédec 14Division of Drug Discovery and Safety, Leiden Academic Centre for Drug Research, Leiden University, the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sylvia E. Le DévédecJosh Moore 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Josh MooreYael Paran 16IDEA Bio-Medical Ltd, Rehovot, IsraelFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Yael ParanJaime Prilusky 17Life Science Core Facilities, Weizmann Institute of Science, Rehovot, IsraelFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jaime PriluskyPhilippe Rocca-Serra 1Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Philippe Rocca-SerraPhilippe Roudot 18Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Philippe RoudotMarc Schuster 11Institute for Experimental Immunology and Imaging, University Hospital, University Duisburg-Essen, Essen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marc SchusterGwendolien Sergeant 4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gwendolien SergeantStaffan Strömblad 19Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Staffan StrömbladJason R. Swedlow 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jason R. SwedlowMerijn van Erp 6Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Merijn van ErpMarleen Van Troys 4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marleen Van TroysAssaf Zaritsky 20Department of Software and Information Systems Engineering, Ben-Gurion University of the Negev, Beer-Sheva, IsraelFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Assaf ZaritskySusanna-Assunta Sansone 1Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Susanna-Assunta SansoneFor correspondence: susanna-assunta.sansone@oerc.ox.ac.uk lennart.martens@vib-ugent.beLennart Martens 3VIB-UGent Center for Medical Biotechnology, Ghent, Belgium4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lennart MartensFor correspondence: susanna-assunta.sansone@oerc.ox.ac.uk lennart.martens@vib-ugent.be

Now published in GigaScience doi: 10.1093/gigascience/giaa046 Rafael R. C. Cuadrat 1Molecular Epidemiology Department, German Institute of Human Nutrition Potsdam-Rehbruecke - DIfEFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Rafael R. C. CuadratMaria Sorokina 2Friedrich-Schiller University, Lessingstrasse 8, 07743 Jena, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Maria SorokinaBruno G. Andrade 3Embrapa Southeast Livestock - EMBRAPAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTobias Goris 4Department of Molecular Toxicology, Research Group Intestinal Microbiology, German Institute of Human Nutrition Potsdam-Rehbruecke - DIfEFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlberto M. R. Dávila 5Computational and Systems Biology Laboratory, Oswaldo Cruz Institute, FIOCRUZ. Av Brasil 4365, Rio de Janeiro, RJ, Brasil. 21040-900Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alberto M. R. DávilaFor correspondence: alberto.davila@fiocruz.br

Now published in GigaScience doi: 10.1093/gigascience/giaa037 Nathan J Kenny 1Natural History Museum, Department of Life Sciences, Cromwell Road, London SW7 5BD, UK2Oxford Brookes University, Headington Rd, Oxford OX3 0BP, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nathan J KennyShane A McCarthy 3Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteOlga Dudchenko 4The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA5The Center for Theoretical Biological Physics, Rice University, Houston, TX, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKatherine James 1Natural History Museum, Department of Life Sciences, Cromwell Road, London SW7 5BD, UK6Department of Applied Sciences, Faculty of Health and Life Sciences, Northumbria University, Newcastle upon Tyne NE1 8ST UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEmma Betteridge 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCraig Corton 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJale Dolucan 7Wellcome Sanger Institute, Cambridge CB10 1SA, UK8Freeline Therapeutics Limited, Stevenage Bioscience Catalyst, Gunnels Wood Road, Stevenage, Hertfordshire, SG1 2FX, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDan Mead 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKaren Oliver 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteArina D Omer 4The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSarah Pelan 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYan Ryan 9School of Computing, Newcastle University, Newcastle upon Tyne NE1 7RU, UK10Institute of Infection and Global Health, Liverpool University, iC2, 146 Brownlow Hill, L3 5RFFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYing Sims 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJason Skelton 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichelle Smith 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJames Torrance 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid Weisz 4The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAnil Wipat 9School of Computing, Newcastle University, Newcastle upon Tyne NE1 7RU, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteErez L Aiden 4The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA5The Center for Theoretical Biological Physics, Rice University, Houston, TX, USA11Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai, China12School of Agriculture and Environment, University of Western Australia, Perth, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKerstin Howe 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSuzanne T Williams 1Natural History Museum, Department of Life Sciences, Cromwell Road, London SW7 5BD, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Suzanne T WilliamsFor correspondence: s.williams@nhm.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giaa030 Mitchell J. Feldmann 1Department of Plant Sciences, University of California, Davis. One Shields Ave, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mitchell J. FeldmannFor correspondence: mjfeldmann@ucdavis.eduMichael A. Hardigan 1Department of Plant Sciences, University of California, Davis. One Shields Ave, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRandi A. Famula 1Department of Plant Sciences, University of California, Davis. One Shields Ave, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Randi A. FamulaCindy M. López 1Department of Plant Sciences, University of California, Davis. One Shields Ave, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAmy Tabb 2USDA-ARS-AFRS, 2217 Wiltshire Rd, Kearneysville, WV 25430, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Amy TabbGlenn S. Cole 1Department of Plant Sciences, University of California, Davis. One Shields Ave, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSteven J. Knapp 1Department of Plant Sciences, University of California, Davis. One Shields Ave, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Steven J. Knapp

Now published in GigaScience doi: 10.1093/gigascience/giaa035 Karl Johnson 1UCCS center for the Biofrontiers Institute, University of Colorado at Colorado Springs 1420 Austin Bluffs Parkway, Colorado Springs, Colorado, 80918, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGuy M. Hagen 1UCCS center for the Biofrontiers Institute, University of Colorado at Colorado Springs 1420 Austin Bluffs Parkway, Colorado Springs, Colorado, 80918, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Guy M. HagenFor correspondence: ghagen@uccs.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa033 Marco Antonio Tangaro 1Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (CNR), Via Amendola 165/A, 70126 Bari, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marco Antonio TangaroGiacinto Donvito 2National Institute for Nuclear Physics (INFN), Section of Bari, Via Orabona 4, 70126 Bari, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Giacinto DonvitoMarica Antonacci 2National Institute for Nuclear Physics (INFN), Section of Bari, Via Orabona 4, 70126 Bari, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marica AntonacciMatteo Chiara 3Department of Biosciences, University of Milan, via Celoria 26, 20133 Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Matteo ChiaraPietro Mandreoli 3Department of Biosciences, University of Milan, via Celoria 26, 20133 Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGraziano Pesole 1Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (CNR), Via Amendola 165/A, 70126 Bari, Italy4Department of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari, Via Orabona 4, 70126 Bari, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Graziano PesoleFederico Zambelli 1Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (CNR), Via Amendola 165/A, 70126 Bari, Italy3Department of Biosciences, University of Milan, via Celoria 26, 20133 Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Federico Zambelli

Now published in GigaScience doi: 10.1093/gigascience/giaa028 Olexiy Kyrgyzov 1CEA Genoscope, Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteVincent Prost 1CEA Genoscope, Evry, France2CEA LIST, Gif-sur-Yvette, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStéphane Gazut 2CEA LIST, Gif-sur-Yvette, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBruno Farcy 3Bull Technologies, Les Clayes-sous-Bois, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteThomas Brüls 1CEA Genoscope, Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: bruls@genoscope.cns.fr

Now published in GigaScience doi: 10.1093/gigascience/giaa025 Thomas McGowan 1Minnesota Supercomputing Institute, University of Minnesota, 599 Walter Library, 117 Pleasant Street SE, Minneapolis, MN 55455Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJames E. Johnson 1Minnesota Supercomputing Institute, University of Minnesota, 599 Walter Library, 117 Pleasant Street SE, Minneapolis, MN 55455Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePraveen Kumar 2Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church St SE, Minneapolis, MN, 554553Bioinformatics and Computational Biology program, University of Minnesota-Rochester, 111 South Broadway, Suite 300, Rochester, MN 55904Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRay Sajulga 2Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church St SE, Minneapolis, MN, 55455Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteSubina Mehta 2Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church St SE, Minneapolis, MN, 55455Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePratik D. Jagtap 2Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church St SE, Minneapolis, MN, 55455Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteTimothy J. Griffin 2Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church St SE, Minneapolis, MN, 55455Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: tgriffin@umn.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa010 Edi Prifti 1Institute of Cardiometabolism and Nutrition, Integromics, ICAN, Paris, France2Sorbonne University, IRD, UMMISCO, UMI 209, Paris, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Edi PriftiYann Chevaleyre 3Paris-Dauphine University, PSL Research University, CNRS, UMR 7243, LAMSADE, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Yann ChevaleyreBlaise Hanczar 4IBISC, University Paris-Saclay, University Evry, Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Blaise HanczarEugeni Belda 1Institute of Cardiometabolism and Nutrition, Integromics, ICAN, Paris, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Eugeni BeldaAntoine Danchin 5Institute of Cardiometabolism and Nutrition, ICAN, Paris, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Antoine DanchinKarine Clément 6Sorbonne University, INSERM, Nutriomics team, Paris, France7Assistance Publique-Hôpitaux de Paris, Nutrition department, CRNH Ile de France, Paris, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Karine ClémentJean-Daniel Zucker 1Institute of Cardiometabolism and Nutrition, Integromics, ICAN, Paris, France2Sorbonne University, IRD, UMMISCO, UMI 209, Paris, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jean-Daniel Zucker

Now published in GigaScience doi: 10.1093/gigascience/giaa005 Ekaterina Noskova 1ITMO University, St. Petersburg, Russia2JetBrains Research, St. Petersburg, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: ekaterina.e.noskova@gmail.comVladimir Ulyantsev 1ITMO University, St. Petersburg, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKlaus-Peter Koepfli 3Theodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, St. Petersburg, Russia5National Zoological Park, Smithsonian Conservation Biology Institute, Washington DC, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStephen J. O’Brien 3Theodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, St. Petersburg, Russia4Oceanographic Center, Nova Southeastern University Ft Lauderdale, Ft Lauderdale, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePavel Dobrynin 3Theodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, St. Petersburg, Russia5National Zoological Park, Smithsonian Conservation Biology Institute, Washington DC, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa004 Zheng Li Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Zheng LiMichael S Barker Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael S Barker

Now published in GigaScience doi: 10.1093/gigascience/giaa003 Jerven Bolleman 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jerven BollemanFor correspondence: jerven.bolleman@sib.swissEduoard de Castro 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Eduoard de CastroDelphine Baratin 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Delphine BaratinSebastien Gehant 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sebastien GehantBeatrice A. Cuche 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Beatrice A. CucheAndrea H. Auchincloss 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Andrea H. AuchinclossElisabeth Coudert 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Elisabeth CoudertChantal Hulo 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Chantal HuloPatrick Masson 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Patrick MassonIvo Pedruzzi 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ivo PedruzziCatherine Rivoire 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Catherine RivoireIoannis Xenarios 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland2CHUV/LICR, Agora Centre, CH-1005 Lausanne, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ioannis XenariosNicole Redaschi 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nicole RedaschiAlan Bridge 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alan Bridge

Now published in GigaScience doi: 10.1093/gigascience/giz165 George Alter 1University of MichiganFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for George AlterAlejandra Gonzalez-Beltran 2University of OxfordFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alejandra Gonzalez-BeltranLucila Ohno-Machado 3University of California at San DiegoFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lucila Ohno-MachadoPhilippe Rocca-Serra 4University of OxfordFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Philippe Rocca-Serra

Now published in GigaScience doi: 10.1093/gigascience/giaa007 Stephen J. Bush 1Nuffield Department of Medicine, University of Oxford, Oxford, UK2National Institute for Health Research Health Research Protection Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Stephen J. BushFor correspondence: stephen.bush@roslin.ed.ac.ukDona Foster 1Nuffield Department of Medicine, University of Oxford, Oxford, UK3National Institute for Health Research Oxford Biomedical Research Centre, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid W. Eyre 1Nuffield Department of Medicine, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for David W. EyreEmily L. Clark 4The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Emily L. ClarkNicola De Maio 1Nuffield Department of Medicine, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLiam P. Shaw 1Nuffield Department of Medicine, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Liam P. ShawNicole Stoesser 1Nuffield Department of Medicine, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nicole StoesserTim E. A. Peto 1Nuffield Department of Medicine, University of Oxford, Oxford, UK2National Institute for Health Research Health Research Protection Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Oxford, UK3National Institute for Health Research Oxford Biomedical Research Centre, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDerrick W. Crook 1Nuffield Department of Medicine, University of Oxford, Oxford, UK2National Institute for Health Research Health Research Protection Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Oxford, UK3National Institute for Health Research Oxford Biomedical Research Centre, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteA. Sarah Walker 1Nuffield Department of Medicine, University of Oxford, Oxford, UK2National Institute for Health Research Health Research Protection Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Oxford, UK3National Institute for Health Research Oxford Biomedical Research Centre, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa002 Miranda E. Pitt 1Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, 4072, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Miranda E. PittFor correspondence: miranda.pitt@imb.uq.edu.au l.coin@imb.uq.edu.auSon H. Nguyen 1Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, 4072, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Son H. NguyenTânia P.S. Duarte 1Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, 4072, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Tânia P.S. DuarteMark A.T. Blaskovich 1Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, 4072, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mark A.T. BlaskovichLachlan J.M. Coin 1Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, 4072, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lachlan J.M. CoinFor correspondence: miranda.pitt@imb.uq.edu.au l.coin@imb.uq.edu.au

Now published in GigaScience doi: 10.1093/gigascience/giz158 Mitsutaka Kadota 1Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), Kobe, 650-0047, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mitsutaka KadotaHisashi Miura 2Laboratory for Developmental Epigenetics, RIKEN BDR, Kobe, 650-0047, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Hisashi MiuraKaori Tanaka 1Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), Kobe, 650-0047, Japan3Division of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, 812-0054, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteIchiro Hiratani 2Laboratory for Developmental Epigenetics, RIKEN BDR, Kobe, 650-0047, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ichiro Hiratani

Now published in GigaScience doi: 10.1093/gigascience/giz160 Weiwen Wang 1Research School of Biology, the Australian National University, Canberra, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Weiwen WangFor correspondence: wei.wang@anu.edu.au rob.lanfear@anu.edu.auAshutosh Das 1Research School of Biology, the Australian National University, Canberra, Australia2Department of Genetics and Animal Breeding, Faculty of Veterinary Medicine, Chittagong Veterinary and Animal Sciences University, Chittagong, BangladeshFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ashutosh DasDavid Kainer 1Research School of Biology, the Australian National University, Canberra, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for David KainerMiriam Schalamun 1Research School of Biology, the Australian National University, Canberra, Australia3Institute of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences, Vienna, AustriaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Miriam SchalamunAlejandro Morales-Suarez 4Department of Biological Sciences, Macquarie University, Sydney, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alejandro Morales-SuarezBenjamin Schwessinger 1Research School of Biology, the Australian National University, Canberra, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Benjamin Schwessinger

Now published in GigaScience doi: 10.1093/gigascience/giz141 Lu Zhang 1Department of Computer Science, Hong Kong Baptist University2Department of Pathology, Stanford University3Department of Computer Science, Stanford UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXin Zhou 3Department of Computer Science, Stanford UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZiming Weng 2Department of Pathology, Stanford UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteArend Sidow 2Department of Pathology, Stanford University4Department of Genetics, Stanford UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: arend@stanford.edu

ABSTRACT

Now published in GigaScience doi: 10.1093/gigascience/giz132 Ekaterina Osipova 1Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany2Max Planck Institute for the Physics of Complex Systems, Dresden, Germany3Center for Systems Biology Dresden, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNikolai Hecker 1Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany2Max Planck Institute for the Physics of Complex Systems, Dresden, Germany3Center for Systems Biology Dresden, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichael Hiller 1Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany2Max Planck Institute for the Physics of Complex Systems, Dresden, Germany3Center for Systems Biology Dresden, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: hiller@mpi-cbg.de

Now published in GigaScience doi: 10.1093/gigascience/giz136 Joeri S. Strijk 1State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Forestry, Guangxi University, Nanning, Guangxi 530005, China2Biodiversity Genomics Team, Plant Ecophysiology & Evolution Group, Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Daxuedonglu 100, Nanning, Guangxi, 530005, China3Alliance for Conservation Tree Genomics, Pha Tad Ke Botanical Garden, PO Box 959, 06000 Luang Prabang, LaosFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Joeri S. StrijkFor correspondence: jsstrijk@hotmail.comDamien D. Hinsinger 2Biodiversity Genomics Team, Plant Ecophysiology & Evolution Group, Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Daxuedonglu 100, Nanning, Guangxi, 530005, China3Alliance for Conservation Tree Genomics, Pha Tad Ke Botanical Garden, PO Box 959, 06000 Luang Prabang, LaosFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Damien D. HinsingerFeng-Ping Zhang 4Evolutionary Ecology of Plant Reproductive Systems Group, Kunming Institute of Botany, Kunming, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKunFang Cao 1State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Forestry, Guangxi University, Nanning, Guangxi 530005, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz123 Robail Yasrab 1School of Computer Science, University of Nottingham, NG8 1BB, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Robail YasrabJonathan A Atkinson 2School of Biosciences, University of Nottingham, LE12 5RD, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jonathan A AtkinsonDarren M Wells 2School of Biosciences, University of Nottingham, LE12 5RD, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Darren M WellsAndrew P French 1School of Computer Science, University of Nottingham, NG8 1BB, UK2School of Biosciences, University of Nottingham, LE12 5RD, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Andrew P FrenchTony P Pridmore 1School of Computer Science, University of Nottingham, NG8 1BB, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Tony P PridmoreMichael P Pound 1School of Computer Science, University of Nottingham, NG8 1BB, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael P PoundFor correspondence: michael.pound@nottingham.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giz110 Varuna Chander 1Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRichard A. Gibbs 1Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFritz J. Sedlazeck 1Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Fritz J. SedlazeckFor correspondence: fritz.sedlazeck@bcm.edu

Now published in GigaScience doi: 10.1093/gigascience/giz074 Timothy H. Webster 1School of Life Sciences, Arizona State UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Timothy H. WebsterMadeline Couse 2Child and Family Research Institute, University of British ColumbiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBruno M. Grande 3Department of Molecular Biology and Biochemistry, Simon Fraser UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Bruno M. GrandeEric Karlins 4Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of HealthFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTanya N. Phung 5Interdepartmental Program in Bioinformatics, UCLAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Tanya N. PhungPhillip A. Richmond 6Centre for Molecular Medicine and Therapeutics, University of British Columbia7BC Children’s HospitalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Phillip A. RichmondWhitney Whitford 8School of Biological Sciences, The University of AucklandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Whitney WhitfordMelissa A. Wilson Sayres 1School of Life Sciences, Arizona State University9Center for Evolution and Medicine, Arizona State UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Melissa A. Wilson Sayres

Now published in GigaScience doi: 10.1093/gigascience/giz084 Michael Kotliar 1Division of Allergy and Immunology, Cincinnati Children’s Hospital Medical Center and Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OHFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael KotliarAndrey V. Kartashov 1Division of Allergy and Immunology, Cincinnati Children’s Hospital Medical Center and Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OHFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Andrey V. KartashovArtem Barski 1Division of Allergy and Immunology, Cincinnati Children’s Hospital Medical Center and Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OH2Division of Human Genetics, Cincinnati Children’s Hospital Medical Center and Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OHFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Artem BarskiFor correspondence: Artem.Barski@cchmc.org

Now published in GigaScience doi: 10.1093/gigascience/giz063 Jay Ghurye 1Department of Computer Science, University of Maryland, College Park, MD2Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institute of Health, Bethesda, MDFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSergey Koren 2Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institute of Health, Bethesda, MDFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteScott T. Small 3Department of Biological Sciences, University of Notre Dame, South Bend, INFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSeth Redmond 4Infectious Disease and Microbiome Program, Broad Institute, Cambridge, MA5Department of Immunology and Infectious Disease, Harvard TH Chan School of Public Health, Boston, MAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePaul Howell 6Centers for Disease Control, Atlanta, GAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAdam M. Phillippy 2Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institute of Health, Bethesda, MDFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNora J. Besansky 3Department of Biological Sciences, University of Notre Dame, South Bend, INFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz037 Mathieu Bourgey 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: guil.bourque@mcgill.ca mathieu.bourgey@mcgill.caRola Dali 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRobert Eveleigh 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteKuang Chung Chen 3McGill HPC Centre, McGill University, Montréal, QC, Canada.4Calcul Québec, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteLouis Letourneau 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJoel Fillon 5Department of Human Genetics, McGill University, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMarc Michaud 2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMaxime Caron 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.5Department of Human Genetics, McGill University, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJohanna Sandoval 6Beaulieu-Saucier Université de Montréal Pharmacogenomics Centre, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFrancois Lefebvre 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteGary Leveque 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteEloi Mercier 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid Bujold 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePascale Marquis 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePatrick Tran Van 7Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid Morais 8Centre de calcul scientifique (ccs) - Université de Sherbrooke, Sherbrooke, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJulien Tremblay 9Energy, Mining and Environment, National Research Council Canada, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiaojian Shao 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteEdouard Henrion 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteEmmanuel Gonzalez 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePierre-Olivier Quirion 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteBryan Caron 3McGill HPC Centre, McGill University, Montréal, QC, Canada.4Calcul Québec, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteGuillaume Bourque 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.5Department of Human Genetics, McGill University, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: guil.bourque@mcgill.ca mathieu.bourgey@mcgill.ca

Now published in GigaScience doi: 10.1093/gigascience/giz064 Amartya Singh 1Department of Physics and Astronomy, Rutgers University, Piscataway, NJ, USA2Center for Systems and Computational Biology, Rutgers Cancer Institute, Rutgers University, New Brunswick, NJ, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGyan Bhanot 1Department of Physics and Astronomy, Rutgers University, Piscataway, NJ, USA2Center for Systems and Computational Biology, Rutgers Cancer Institute, Rutgers University, New Brunswick, NJ, USA3Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, NJ, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHossein Khiabanian 1Department of Physics and Astronomy, Rutgers University, Piscataway, NJ, USA2Center for Systems and Computational Biology, Rutgers Cancer Institute, Rutgers University, New Brunswick, NJ, USA3Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, NJ, USA4Department of Pathology and Laboratory Medicine, Rutgers Robert Wood Johnson Medical School, Rutgers University, New Brunswick, NJ, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Hossein Khiabanian

Now published in GigaScience doi: 10.1093/gigascience/giz077 Lu Gan Department of Biological Sciences and Centre for BioImaging Sciences, National University of Singapore, Singapore 117543Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lu GanFor correspondence: lu@anaphase.orgCai Tong Ng Department of Biological Sciences and Centre for BioImaging Sciences, National University of Singapore, Singapore 117543Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Cai Tong NgChen Chen Department of Biological Sciences and Centre for BioImaging Sciences, National University of Singapore, Singapore 117543Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteShujun Cai Department of Biological Sciences and Centre for BioImaging Sciences, National University of Singapore, Singapore 117543Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Shujun Cai

Now published in GigaScience doi: 10.1093/gigascience/giz047 Yi Zhao 1BGI-Shenzhen, Shenzhen 518083, China3School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510006, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiao Li 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJingwan Wang 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZiyun Wan 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKai Gao 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGang Yi 4Shanghai Institute of Immunology, Shanghai JiaoTong University School of Medicine, Shanghai 200025, China; Department of Immunology and Microbiology, Shanghai JiaoTong University School of Medicine, Shanghai 200025, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXie Wang 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJinghua Wu 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBingbing Fan 2Shenzhen Second People's Hospital, First Affiliated Hospital of Shenzhen University, Shenzhen 518035, Guangdong Province, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWei Zhang 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFang Chen 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHuanming Yang 1BGI-Shenzhen, Shenzhen 518083, China5James D. Watson Institute of Genome Sciences, Hangzhou 310058, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJian Wang 1BGI-Shenzhen, Shenzhen 518083, China5James D. Watson Institute of Genome Sciences, Hangzhou 310058, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXun Xu 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBin Li 1BGI-Shenzhen, Shenzhen 518083, China4Shanghai Institute of Immunology, Shanghai JiaoTong University School of Medicine, Shanghai 200025, China; Department of Immunology and Microbiology, Shanghai JiaoTong University School of Medicine, Shanghai 200025, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShiping Liu 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWeihua Zhao 2Shenzhen Second People's Hospital, First Affiliated Hospital of Shenzhen University, Shenzhen 518035, Guangdong Province, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYong Flou 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiao Liu 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz055 Angela Tam 1Centre de Recherche de l’Institut Universitaire de Gériatrie de Montréal, Montréal, CA2Douglas Hospital Research Centre, McGill University, Montréal, CA3McGill University, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Angela TamFor correspondence: angela.tam@mail.mcgill.ca pierre.bellec@criugm.qc.caChristian Dansereau 1Centre de Recherche de l’Institut Universitaire de Gériatrie de Montréal, Montréal, CA4Département d’Informatique et de recherche opérationnelle, Université de Montréal, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYasser Itturia-Medina 3McGill University, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSebastian Urchs 3McGill University, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePierre Orban 1Centre de Recherche de l’Institut Universitaire de Gériatrie de Montréal, Montréal, CA5Centre de Recherche de l’Institut Universitaire en Santé Mentale de Montréal, Montréal, CA6Département de Psychiatrie, Université de Montréal, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHanad Sharmarke 1Centre de Recherche de l’Institut Universitaire de Gériatrie de Montréal, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJohn Breitner 2Douglas Hospital Research Centre, McGill University, Montréal, CA3McGill University, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePierre Bellec 1Centre de Recherche de l’Institut Universitaire de Gériatrie de Montréal, Montréal, CA4Département d’Informatique et de recherche opérationnelle, Université de Montréal, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: angela.tam@mail.mcgill.ca pierre.bellec@criugm.qc.ca

Now published in GigaScience doi: 10.1093/gigascience/giz043 Samuel M. Nicholls 1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Samuel M. NichollsJoshua C. Quick 1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Joshua C. QuickShuiquan Tang 2Zymo Research Corporation, Irvine, California, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNicholas J. Loman 1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nicholas J. Loman

Now published in GigaScience doi: 10.1093/gigascience/giz028 Venice Juanillas 1International Rice Research Institute, Manila, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlexis Dereeper 2Institut de recherche pour le développement (IRD), University of Montpellier, DIADE, IPME, Montpellier, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alexis DereeperNicolas Beaume 1International Rice Research Institute, Manila, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nicolas BeaumeGaetan Droc 3CIRAD, UMR AGAP, F-34398 Montpellier, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gaetan DrocJoshua Dizon 1International Rice Research Institute, Manila, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJohn Robert Mendoza 8Advanced Science and Technology Institute, Department of Science and Technology, Quezon City, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJon Peter Perdon 8Advanced Science and Technology Institute, Department of Science and Technology, Quezon City, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLocedie Mansueto 1International Rice Research Institute, Manila, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLindsay Triplett 7Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO 80523-1177Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lindsay TriplettJillian Lang 7Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO 80523-1177Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jillian LangGabriel Zhou 4Indiana University, 107 S Indiana Ave, Bloomington, IN 47405, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKunalan Ratharanjan 4Indiana University, 107 S Indiana Ave, Bloomington, IN 47405, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kunalan RatharanjanBeth Plale 4Indiana University, 107 S Indiana Ave, Bloomington, IN 47405, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Beth PlaleJason Haga 5National Institute of Advanced Industrial Science and Technology, AIST Tsukuba Central 1,1-1-1 Umezono, Tsukuba, Ibaraki 305-8560 JAPANFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jason HagaJan E. Leach 7Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO 80523-1177Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jan E. LeachManuel Ruiz 3CIRAD, UMR AGAP, F-34398 Montpellier, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichael Thomson 1International Rice Research Institute, Manila, Philippines6Department of Soil and Crop Sciences, Texas A&M University, Houston, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNickolai Alexandrov 1International Rice Research Institute, Manila, Philippines10Inari Agriculture Inc., 200 Sidney St, Cambridge, Massachusetts, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePierre Larmande 2Institut de recherche pour le développement (IRD), University of Montpellier, DIADE, IPME, Montpellier, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Pierre LarmandeTobias Kretzschmar 1International Rice Research Institute, Manila, Philippines9Southern Cross Plant Science, Southern Cross University, Lismore, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRamil P. Mauleon 1International Rice Research Institute, Manila, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ramil P. Mauleon

Now published in GigaScience doi: 10.1093/gigascience/giz059 Bruno Louro 1CCMAR Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGianluca De Moro 1CCMAR Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCarlos Garcia 1CCMAR Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCymon J. Cox 1CCMAR Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAna Veríssimo 2CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO, Laboratório Associado, Universidade do Porto, Vairão, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStephen J. Sabatino 2CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO, Laboratório Associado, Universidade do Porto, Vairão, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAntónio M. Santos 2CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO, Laboratório Associado, Universidade do Porto, Vairão, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAdelino V. M. Canário 1CCMAR Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Adelino V. M. CanárioFor correspondence: acanario@ualg.pt