Now published in GigaScience doi: 10.1093/gigascience/giaa067 Lisa K. Johnson 1Department of Environmental Toxicology, University of California, Davis2Department of Population Health & Reproduction, School of Veterinary Medicine, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lisa K. JohnsonRuta Sahasrabudhe 3DNA Technologies Core, Genome Center, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTony Gill 1Department of Environmental Toxicology, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJennifer Roach 1Department of Environmental Toxicology, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLutz Froenicke 3DNA Technologies Core, Genome Center, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteC. Titus Brown 2Department of Population Health & Reproduction, School of Veterinary Medicine, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for C. Titus BrownAndrew Whitehead 1Department of Environmental Toxicology, University of California, DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: awhitehead@ucdavis.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa062 Victor A. Padilha 1Institute of Mathematics and Computer Sciences, University of São Paulo, Av. Trabalhador São Carlense 400, São Carlos, SP, 13564-002, BrazilFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteOmer S. Alkhnbashi 2Chair of Bioinformatics, University of Freiburg, Georges-Köhler-Allee 101, Freiburg, 79110, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShiraz A. Shah 3Danish Archaea Centre, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, Copenhagen, DK-2200, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAndré C. P. L. F. de Carvalho 1Institute of Mathematics and Computer Sciences, University of São Paulo, Av. Trabalhador São Carlense 400, São Carlos, SP, 13564-002, BrazilFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRolf Backofen 2Chair of Bioinformatics, University of Freiburg, Georges-Köhler-Allee 101, Freiburg, 79110, Germany4Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Georges-Köhler-Allee 101, Freiburg, 79110, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: backofen@informatik.uni-freiburg.de

Now published in GigaScience doi: 10.1093/gigascience/giaa051 Amanda Warr 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteNabeel Affara 2Department of Pathology, University of Cambridge, Cambridge CB2 1QP, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteBronwen Aken 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteH. Beiki 4Department of Animal Science, Iowa State University, Ames, Iowa, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDerek M. Bickhart 5Dairy Forage Research Center, USDA-ARS, Madison, Wisconsin, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteKonstantinos Billis 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteWilliam Chow 6Wellcome Sanger Institute, Cambridge, CB10 1SA, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteLel Eory 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteHeather A. Finlayson 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePaul Flicek 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteCarlos G. Girón 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDarren K. Griffin 7School of Biosciences, University of Kent, Canterbury CT2 7AF, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRichard Hall 8Pacific Biosciences, Menlo Park, California, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteGreg Hannum 9Denovium Inc., San Diego, California, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteThibaut Hourlier 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteKerstin Howe 6Wellcome Sanger Institute, Cambridge, CB10 1SA, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid A. Hume 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteOsagie Izuogu 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteKristi Kim 8Pacific Biosciences, Menlo Park, California, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteSergey Koren 10Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, Maryland, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteHaibou Liu 4Department of Animal Science, Iowa State University, Ames, Iowa, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteNancy Manchanda 11Bioinformatics and Computational Biology Program, Iowa State University, Ames, Iowa, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFergal J. Martin 3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDan J. Nonneman 12USDA-ARS U.S. Meat Animal Research Center, Clay Center, Nebraska 68933, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRebecca E. O’Connor 7School of Biosciences, University of Kent, Canterbury CT2 7AF, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteAdam M. Phillippy 10Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, Maryland, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteGary A. Rohrer 12USDA-ARS U.S. Meat Animal Research Center, Clay Center, Nebraska 68933, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteBenjamin D. Rosen 13Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, Maryland, U.S.AFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLaurie A. Rund 14Department of Animal Sciences, University of Illinois, Urbana, Illinois, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteCarole A. Sargent 2Department of Pathology, University of Cambridge, Cambridge CB2 1QP, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteLawrence B. Schook 14Department of Animal Sciences, University of Illinois, Urbana, Illinois, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteSteven G. Schroeder 13Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, Maryland, U.S.AFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAriel S. Schwartz 9Denovium Inc., San Diego, California, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteBen M. Skinner 2Department of Pathology, University of Cambridge, Cambridge CB2 1QP, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRichard Talbot 15Edinburgh Genomics, University of Edinburgh, Edinburgh EH9 3FL, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteElizabeth Tseng 8Pacific Biosciences, Menlo Park, California, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteChristopher K. Tuggle 4Department of Animal Science, Iowa State University, Ames, Iowa, U.S.A.11Bioinformatics and Computational Biology Program, Iowa State University, Ames, Iowa, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMick Watson 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: alan.archibald@roslin.ed.ac.uk tim.smith@ARS.USDA.GOV mick.watson@roslin.ed.ac.ukTimothy P. L. Smith 12USDA-ARS U.S. Meat Animal Research Center, Clay Center, Nebraska 68933, U.S.A.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: alan.archibald@roslin.ed.ac.uk tim.smith@ARS.USDA.GOV mick.watson@roslin.ed.ac.ukAlan L. Archibald 1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alan L. ArchibaldFor correspondence: alan.archibald@roslin.ed.ac.uk tim.smith@ARS.USDA.GOV mick.watson@roslin.ed.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giaa061 Saber Hafezqorani 1Canada’s Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC, Canada2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Saber HafezqoraniChen Yang 1Canada’s Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC, Canada2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKa Ming Nip 1Canada’s Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC, Canada2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ka Ming NipRené L Warren 1Canada’s Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for René L WarrenInanc Birol 1Canada’s Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC, Canada3Department of Medical Genetics, University of British Columbia, Vancouver, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Inanc BirolFor correspondence: ibirol@bcgsc.ca

Now published in GigaScience doi: 10.1093/gigascience/giaa060 Wenxi Wang 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZihao Wang 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXintong Li 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZhongfu Ni 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZhaorong Hu 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMingming Xin 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHuiru Peng 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYingyin Yao 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteQixin Sun 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWeilong Guo 1Key Laboratory of Crop Heterosis and Utilization, State Key Laboratory for Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: guoweilong@cau.edu.cn

Now published in GigaScience doi: 10.1093/gigascience/giaa044 Benjamin B. Chu 1Department of Computational Medicine, UCLA, Los Angeles, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Benjamin B. ChuKevin L. Keys 2Department of Medicine, University of California, San Francisco, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kevin L. KeysChristopher A. German 3Department of Biostatistics, Fielding School of Public Health at UCLA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHua Zhou 3Department of Biostatistics, Fielding School of Public Health at UCLA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Hua ZhouJin J. Zhou 4Division of Epidemiology and Biostatistics, University of Arizona, Tucson, AZ 85724, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEric Sobel 1Department of Computational Medicine, UCLA, Los Angeles, USA5Department of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJanet S. Sinsheimer 1Department of Computational Medicine, UCLA, Los Angeles, USA5Department of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Janet S. SinsheimerFor correspondence: jsinshei@ucla.eduKenneth Lange 1Department of Computational Medicine, UCLA, Los Angeles, USA5Department of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kenneth LangeFor correspondence: klange@ucla.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa057 Junhua Li 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China3School of Bioscience & Bioengineering, South China University of Technology, Guangzhou, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Junhua LiHuanzi Zhong 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Huanzi ZhongYuliaxis Ramayo-Caldas 4INRA, Institut National de la Recherche Agronomique, Génétique Animale et Biologie Intégrative, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France5Animal Breeding and Genetics Program, Institute for Research and Technology in Food and Agriculture (IRTA), Torre Marimon, Caldes de Montbui, 08140, SpainFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNicolas Terrapon 6CNRS UMR 7257, Aix-Marseille University, 13288 Marseille, France7INRA, USC 1408 AFMB, 13288 Marseille, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteVincent Lombard 6CNRS UMR 7257, Aix-Marseille University, 13288 Marseille, France7INRA, USC 1408 AFMB, 13288 Marseille, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGabrielle Potocki-Veronese 8LISBP, Universite de Toulouse, CNRS, INRA, INSA, 31077, Toulouse, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJordi Estellé 4INRA, Institut National de la Recherche Agronomique, Génétique Animale et Biologie Intégrative, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMilka Popova 9INRA, UMR Herbivores, Université Clermont Auvergne, VetAgro Sup, F-63122 Saint-Genès Champanelle, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZiyi Yang 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHui Zhang 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFang Li 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShanmei Tang 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWeineng Chen 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBing Chen 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJiyang Li 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJing Guo 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCécile Martin 9INRA, UMR Herbivores, Université Clermont Auvergne, VetAgro Sup, F-63122 Saint-Genès Champanelle, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEmmanuelle Maguin 10INRA, Micalis Institute, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXun Xu 1BGI-Shenzhen, Shenzhen 518083, China2China National GeneBank, BGI-Shenzhen, Shenzhen 518120, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHuanming Yang 1BGI-Shenzhen, Shenzhen 518083, China11James D. Watson Institute of Genome Sciences, Hangzhou 310058, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJian Wang 1BGI-Shenzhen, Shenzhen 518083, China11James D. Watson Institute of Genome Sciences, Hangzhou 310058, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLise Madsen 1BGI-Shenzhen, Shenzhen 518083, China12Institute of Marine Research (IMR), Postboks 1870 Nordnes, 5817 Bergen, Norway13Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen, 2100 Copenhagen Ø, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKarsten Kristiansen 1BGI-Shenzhen, Shenzhen 518083, China13Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen, 2100 Copenhagen Ø, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: diego.morgavi@inra.fr stanislav.ehrlich@inra.fr kk@bio.ku.dkBernard Henrissat 6CNRS UMR 7257, Aix-Marseille University, 13288 Marseille, France7INRA, USC 1408 AFMB, 13288 Marseille, France14Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi ArabiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStanislav D. Ehrlich 15MGP MetaGenoPolis, INRA, Université Paris-Saclay, 78350 Jouy en Josas, France16Centre for Host Microbiome Interactions, Dental Institute, King’s College London, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: diego.morgavi@inra.fr stanislav.ehrlich@inra.fr kk@bio.ku.dkDiego P. Morgavi 9INRA, UMR Herbivores, Université Clermont Auvergne, VetAgro Sup, F-63122 Saint-Genès Champanelle, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Diego P. MorgaviFor correspondence: diego.morgavi@inra.fr stanislav.ehrlich@inra.fr kk@bio.ku.dk

Now published in GigaScience doi: 10.1093/gigascience/giaa052 Alessandro Petrini 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: alessandro.petrini@unimi.itMarco Mesiti 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMax Schubach 2Berlin Institute of Health (BIH), Berlin, Germany3Charité – Universitätsmedizin Berlin, Berlin, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMarco Frasca 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDaniel Danis 4The Jackson Laboratory for Genomic Medicine, Farmington CT, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMatteo Re 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGiuliano Grossi 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLuca Cappelletti 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTiziana Castrignanò 5CINECA, SCAI SuperComputing Applications and Innovation Department, Roma, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePeter N. Robinson 4The Jackson Laboratory for Genomic Medicine, Farmington CT, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Peter N. RobinsonGiorgio Valentini 1AnacletoLab - Dipartimento di Informatica, Università degli Studi di Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa050 Annarita Marrano 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: amarrano@ucdavis.eduMonica Britton 2Bioinformatics Core Facility, Genome Center, University of California Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePaulo A. Zaini 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAleksey V. Zimin 3Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRachael E. Workman 3Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDaniela Puiu 4Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University, Baltimore, MD 21205, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLuca Bianco 5Research and Innovation Center, Department of Genomics and Biology of Fruit Crops, Fondazione E Mach, San Michele all’ Adige (TN) 38010, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Luca BiancoErica Adele Di Pierro 5Research and Innovation Center, Department of Genomics and Biology of Fruit Crops, Fondazione E Mach, San Michele all’ Adige (TN) 38010, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBrian J. Allen 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSandeep Chakraborty 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichela Troggio 5Research and Innovation Center, Department of Genomics and Biology of Fruit Crops, Fondazione E Mach, San Michele all’ Adige (TN) 38010, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCharles A. Leslie 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWinston Timp 3Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Winston TimpAbhaya Dandekar 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSteven L. Salzberg 3Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA4Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University, Baltimore, MD 21205, USA6Departments of Computer Science and Biostatistics, Johns Hopkins University, Baltimore, MD 21218Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid B. Neale 1Department of Plant Sciences, University of California, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa048 Morteza Hosseini 1IEETA/DETI, University of Aveiro, 3810-193 Aveiro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: seyedmorteza@ua.ptDiogo Pratas 1IEETA/DETI, University of Aveiro, 3810-193 Aveiro, Portugal2Department of Virology, University of Helsinki, 00100 Helsinki, FinlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBurkhard Morgenstern 3Department of Bioinformatics, University of Göttingen, Goldschmidtstr. 1, 37077 Göttingen, Germany4Göttingen Center of Molecular Biosciences (GZMB), Justus-von-Liebig-Weg 11, 37077 Göttingen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteArmando J. Pinho 1IEETA/DETI, University of Aveiro, 3810-193 Aveiro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Abstract

Now published in GigaScience doi: 10.1093/gigascience/giaa045 Graham J Etherington The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Graham J EtheringtonFor correspondence: graham.etherington@earlham.ac.uk Federica.dipalma@earlham.ac.ukDarren Heavens The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Darren HeavensDavid Baker The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAshleigh Lister The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ashleigh ListerRose McNelly The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGonzalo Garcia The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gonzalo GarciaBernardo Clavijo The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Bernardo ClavijoIain Macaulay The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Iain MacaulayWilfried Haerty The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Wilfried HaertyFederica Di Palma The Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Federica Di PalmaFor correspondence: graham.etherington@earlham.ac.uk Federica.dipalma@earlham.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giaa041 Alejandra N. Gonzalez-Beltran 1Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UK2Scientific Computing Department, Rutherford Appleton Laboratory, Science and Technology Facilities Council, Didcot, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alejandra N. Gonzalez-BeltranPaola Masuzzo 3VIB-UGent Center for Medical Biotechnology, Ghent, Belgium4Department of Biomolecular Medicine, Ghent University, Ghent, Belgium5Institute for Globally Distributed Open Research and Education (IGDORE), Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Paola MasuzzoChristophe Ampe 4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Christophe AmpeGert-Jan Bakker 6Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gert-Jan BakkerSébastien Besson 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sébastien BessonRobert H. Eibl 8German Cancer Research Center, DKFZ Alumni Association, Heidelberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Robert H. EiblPeter Friedl 6Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands9David H. Koch Center for Applied Genitourinary Medicine, UT MD Anderson Cancer Center, Houston, TX, USA10Cancer Genomics Center, Utrecht, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Peter FriedlMatthias Gunzer 11Institute for Experimental Immunology and Imaging, University Hospital, University Duisburg-Essen, Essen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Matthias GunzerMark Kittisopikul 12Department of Biophysics, UT Southwestern Medical Center, Dallas, TX, USA13Department of Cell and Developmental Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mark KittisopikulSylvia E. Le Dévédec 14Division of Drug Discovery and Safety, Leiden Academic Centre for Drug Research, Leiden University, the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sylvia E. Le DévédecSimone Leo 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UK15Center for Advanced Studies, Research, and Development in Sardinia (CRS4), Pula(CA), ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Simone LeoJosh Moore 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Josh MooreYael Paran 16IDEA Bio-Medical Ltd, Rehovot, IsraelFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Yael ParanJaime Prilusky 17Life Science Core Facilities, Weizmann Institute of Science, Rehovot, IsraelFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jaime PriluskyPhilippe Rocca-Serra 1Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Philippe Rocca-SerraPhilippe Roudot 18Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Philippe RoudotMarc Schuster 11Institute for Experimental Immunology and Imaging, University Hospital, University Duisburg-Essen, Essen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marc SchusterGwendolien Sergeant 4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gwendolien SergeantStaffan Strömblad 19Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Staffan StrömbladJason R. Swedlow 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jason R. SwedlowMerijn van Erp 6Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Merijn van ErpMarleen Van Troys 4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marleen Van TroysAssaf Zaritsky 20Department of Software and Information Systems Engineering, Ben-Gurion University of the Negev, Beer-Sheva, IsraelFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Assaf ZaritskySusanna-Assunta Sansone 1Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Susanna-Assunta SansoneFor correspondence: susanna-assunta.sansone@oerc.ox.ac.uk lennart.martens@vib-ugent.beLennart Martens 3VIB-UGent Center for Medical Biotechnology, Ghent, Belgium4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lennart MartensFor correspondence: susanna-assunta.sansone@oerc.ox.ac.uk lennart.martens@vib-ugent.be

Now published in GigaScience doi: 10.1093/gigascience/giaa041 Alejandra N. Gonzalez-Beltran 1Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UK2Scientific Computing Department, Rutherford Appleton Laboratory, Science and Technology Facilities Council, Didcot, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alejandra N. Gonzalez-BeltranPaola Masuzzo 3VIB-UGent Center for Medical Biotechnology, Ghent, Belgium4Department of Biomolecular Medicine, Ghent University, Ghent, Belgium5Institute for Globally Distributed Open Research and Education (IGDORE), Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Paola MasuzzoChristophe Ampe 4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Christophe AmpeGert-Jan Bakker 6Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gert-Jan BakkerSébastien Besson 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sébastien BessonRobert H. Eibl 8German Cancer Research Center, DKFZ Alumni Association, Heidelberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Robert H. EiblPeter Friedl 6Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands9David H. Koch Center for Applied Genitourinary Medicine, UT MD Anderson Cancer Center, Houston, TX, USA10Cancer Genomics Center, Utrecht, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Peter FriedlMatthias Gunzer 11Institute for Experimental Immunology and Imaging, University Hospital, University Duisburg-Essen, Essen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Matthias GunzerMark Kittisopikul 12Department of Biophysics, UT Southwestern Medical Center, Dallas, TX, USA13Department of Cell and Developmental Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mark KittisopikulSylvia E. Le Dévédec 14Division of Drug Discovery and Safety, Leiden Academic Centre for Drug Research, Leiden University, the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sylvia E. Le DévédecJosh Moore 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Josh MooreYael Paran 16IDEA Bio-Medical Ltd, Rehovot, IsraelFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Yael ParanJaime Prilusky 17Life Science Core Facilities, Weizmann Institute of Science, Rehovot, IsraelFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jaime PriluskyPhilippe Rocca-Serra 1Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Philippe Rocca-SerraPhilippe Roudot 18Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Philippe RoudotMarc Schuster 11Institute for Experimental Immunology and Imaging, University Hospital, University Duisburg-Essen, Essen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marc SchusterGwendolien Sergeant 4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gwendolien SergeantStaffan Strömblad 19Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Staffan StrömbladJason R. Swedlow 7Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jason R. SwedlowMerijn van Erp 6Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Merijn van ErpMarleen Van Troys 4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marleen Van TroysAssaf Zaritsky 20Department of Software and Information Systems Engineering, Ben-Gurion University of the Negev, Beer-Sheva, IsraelFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Assaf ZaritskySusanna-Assunta Sansone 1Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Susanna-Assunta SansoneFor correspondence: susanna-assunta.sansone@oerc.ox.ac.uk lennart.martens@vib-ugent.beLennart Martens 3VIB-UGent Center for Medical Biotechnology, Ghent, Belgium4Department of Biomolecular Medicine, Ghent University, Ghent, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lennart MartensFor correspondence: susanna-assunta.sansone@oerc.ox.ac.uk lennart.martens@vib-ugent.be

Now published in GigaScience doi: 10.1093/gigascience/giaa046 Rafael R. C. Cuadrat 1Molecular Epidemiology Department, German Institute of Human Nutrition Potsdam-Rehbruecke - DIfEFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Rafael R. C. CuadratMaria Sorokina 2Friedrich-Schiller University, Lessingstrasse 8, 07743 Jena, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Maria SorokinaBruno G. Andrade 3Embrapa Southeast Livestock - EMBRAPAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTobias Goris 4Department of Molecular Toxicology, Research Group Intestinal Microbiology, German Institute of Human Nutrition Potsdam-Rehbruecke - DIfEFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlberto M. R. Dávila 5Computational and Systems Biology Laboratory, Oswaldo Cruz Institute, FIOCRUZ. Av Brasil 4365, Rio de Janeiro, RJ, Brasil. 21040-900Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alberto M. R. DávilaFor correspondence: alberto.davila@fiocruz.br

Now published in GigaScience doi: 10.1093/gigascience/giaa037 Nathan J Kenny 1Natural History Museum, Department of Life Sciences, Cromwell Road, London SW7 5BD, UK2Oxford Brookes University, Headington Rd, Oxford OX3 0BP, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nathan J KennyShane A McCarthy 3Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteOlga Dudchenko 4The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA5The Center for Theoretical Biological Physics, Rice University, Houston, TX, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKatherine James 1Natural History Museum, Department of Life Sciences, Cromwell Road, London SW7 5BD, UK6Department of Applied Sciences, Faculty of Health and Life Sciences, Northumbria University, Newcastle upon Tyne NE1 8ST UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEmma Betteridge 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCraig Corton 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJale Dolucan 7Wellcome Sanger Institute, Cambridge CB10 1SA, UK8Freeline Therapeutics Limited, Stevenage Bioscience Catalyst, Gunnels Wood Road, Stevenage, Hertfordshire, SG1 2FX, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDan Mead 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKaren Oliver 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteArina D Omer 4The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSarah Pelan 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYan Ryan 9School of Computing, Newcastle University, Newcastle upon Tyne NE1 7RU, UK10Institute of Infection and Global Health, Liverpool University, iC2, 146 Brownlow Hill, L3 5RFFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYing Sims 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJason Skelton 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichelle Smith 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJames Torrance 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid Weisz 4The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAnil Wipat 9School of Computing, Newcastle University, Newcastle upon Tyne NE1 7RU, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteErez L Aiden 4The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA5The Center for Theoretical Biological Physics, Rice University, Houston, TX, USA11Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai, China12School of Agriculture and Environment, University of Western Australia, Perth, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKerstin Howe 7Wellcome Sanger Institute, Cambridge CB10 1SA, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSuzanne T Williams 1Natural History Museum, Department of Life Sciences, Cromwell Road, London SW7 5BD, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Suzanne T WilliamsFor correspondence: s.williams@nhm.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giaa030 Mitchell J. Feldmann 1Department of Plant Sciences, University of California, Davis. One Shields Ave, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mitchell J. FeldmannFor correspondence: mjfeldmann@ucdavis.eduMichael A. Hardigan 1Department of Plant Sciences, University of California, Davis. One Shields Ave, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRandi A. Famula 1Department of Plant Sciences, University of California, Davis. One Shields Ave, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Randi A. FamulaCindy M. López 1Department of Plant Sciences, University of California, Davis. One Shields Ave, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAmy Tabb 2USDA-ARS-AFRS, 2217 Wiltshire Rd, Kearneysville, WV 25430, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Amy TabbGlenn S. Cole 1Department of Plant Sciences, University of California, Davis. One Shields Ave, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSteven J. Knapp 1Department of Plant Sciences, University of California, Davis. One Shields Ave, Davis, CA 95616, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Steven J. Knapp

Now published in GigaScience doi: 10.1093/gigascience/giaa035 Karl Johnson 1UCCS center for the Biofrontiers Institute, University of Colorado at Colorado Springs 1420 Austin Bluffs Parkway, Colorado Springs, Colorado, 80918, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGuy M. Hagen 1UCCS center for the Biofrontiers Institute, University of Colorado at Colorado Springs 1420 Austin Bluffs Parkway, Colorado Springs, Colorado, 80918, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Guy M. HagenFor correspondence: ghagen@uccs.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa033 Marco Antonio Tangaro 1Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (CNR), Via Amendola 165/A, 70126 Bari, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marco Antonio TangaroGiacinto Donvito 2National Institute for Nuclear Physics (INFN), Section of Bari, Via Orabona 4, 70126 Bari, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Giacinto DonvitoMarica Antonacci 2National Institute for Nuclear Physics (INFN), Section of Bari, Via Orabona 4, 70126 Bari, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marica AntonacciMatteo Chiara 3Department of Biosciences, University of Milan, via Celoria 26, 20133 Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Matteo ChiaraPietro Mandreoli 3Department of Biosciences, University of Milan, via Celoria 26, 20133 Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGraziano Pesole 1Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (CNR), Via Amendola 165/A, 70126 Bari, Italy4Department of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari, Via Orabona 4, 70126 Bari, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Graziano PesoleFederico Zambelli 1Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (CNR), Via Amendola 165/A, 70126 Bari, Italy3Department of Biosciences, University of Milan, via Celoria 26, 20133 Milano, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Federico Zambelli

Now published in GigaScience doi: 10.1093/gigascience/giaa028 Olexiy Kyrgyzov 1CEA Genoscope, Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteVincent Prost 1CEA Genoscope, Evry, France2CEA LIST, Gif-sur-Yvette, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStéphane Gazut 2CEA LIST, Gif-sur-Yvette, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBruno Farcy 3Bull Technologies, Les Clayes-sous-Bois, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteThomas Brüls 1CEA Genoscope, Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: bruls@genoscope.cns.fr

Now published in GigaScience doi: 10.1093/gigascience/giaa025 Thomas McGowan 1Minnesota Supercomputing Institute, University of Minnesota, 599 Walter Library, 117 Pleasant Street SE, Minneapolis, MN 55455Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJames E. Johnson 1Minnesota Supercomputing Institute, University of Minnesota, 599 Walter Library, 117 Pleasant Street SE, Minneapolis, MN 55455Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePraveen Kumar 2Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church St SE, Minneapolis, MN, 554553Bioinformatics and Computational Biology program, University of Minnesota-Rochester, 111 South Broadway, Suite 300, Rochester, MN 55904Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRay Sajulga 2Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church St SE, Minneapolis, MN, 55455Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteSubina Mehta 2Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church St SE, Minneapolis, MN, 55455Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePratik D. Jagtap 2Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church St SE, Minneapolis, MN, 55455Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteTimothy J. Griffin 2Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church St SE, Minneapolis, MN, 55455Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: tgriffin@umn.edu

Now published in GigaScience doi: 10.1093/gigascience/giaa010 Edi Prifti 1Institute of Cardiometabolism and Nutrition, Integromics, ICAN, Paris, France2Sorbonne University, IRD, UMMISCO, UMI 209, Paris, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Edi PriftiYann Chevaleyre 3Paris-Dauphine University, PSL Research University, CNRS, UMR 7243, LAMSADE, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Yann ChevaleyreBlaise Hanczar 4IBISC, University Paris-Saclay, University Evry, Evry, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Blaise HanczarEugeni Belda 1Institute of Cardiometabolism and Nutrition, Integromics, ICAN, Paris, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Eugeni BeldaAntoine Danchin 5Institute of Cardiometabolism and Nutrition, ICAN, Paris, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Antoine DanchinKarine Clément 6Sorbonne University, INSERM, Nutriomics team, Paris, France7Assistance Publique-Hôpitaux de Paris, Nutrition department, CRNH Ile de France, Paris, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Karine ClémentJean-Daniel Zucker 1Institute of Cardiometabolism and Nutrition, Integromics, ICAN, Paris, France2Sorbonne University, IRD, UMMISCO, UMI 209, Paris, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jean-Daniel Zucker

Now published in GigaScience doi: 10.1093/gigascience/giaa005 Ekaterina Noskova 1ITMO University, St. Petersburg, Russia2JetBrains Research, St. Petersburg, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: ekaterina.e.noskova@gmail.comVladimir Ulyantsev 1ITMO University, St. Petersburg, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKlaus-Peter Koepfli 3Theodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, St. Petersburg, Russia5National Zoological Park, Smithsonian Conservation Biology Institute, Washington DC, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStephen J. O’Brien 3Theodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, St. Petersburg, Russia4Oceanographic Center, Nova Southeastern University Ft Lauderdale, Ft Lauderdale, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePavel Dobrynin 3Theodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, St. Petersburg, Russia5National Zoological Park, Smithsonian Conservation Biology Institute, Washington DC, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa004 Zheng Li Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Zheng LiMichael S Barker Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael S Barker

Now published in GigaScience doi: 10.1093/gigascience/giaa003 Jerven Bolleman 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jerven BollemanFor correspondence: jerven.bolleman@sib.swissEduoard de Castro 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Eduoard de CastroDelphine Baratin 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Delphine BaratinSebastien Gehant 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sebastien GehantBeatrice A. Cuche 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Beatrice A. CucheAndrea H. Auchincloss 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Andrea H. AuchinclossElisabeth Coudert 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Elisabeth CoudertChantal Hulo 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Chantal HuloPatrick Masson 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Patrick MassonIvo Pedruzzi 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ivo PedruzziCatherine Rivoire 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Catherine RivoireIoannis Xenarios 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland2CHUV/LICR, Agora Centre, CH-1005 Lausanne, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ioannis XenariosNicole Redaschi 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nicole RedaschiAlan Bridge 1Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alan Bridge

Now published in GigaScience doi: 10.1093/gigascience/giz165 George Alter 1University of MichiganFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for George AlterAlejandra Gonzalez-Beltran 2University of OxfordFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alejandra Gonzalez-BeltranLucila Ohno-Machado 3University of California at San DiegoFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lucila Ohno-MachadoPhilippe Rocca-Serra 4University of OxfordFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Philippe Rocca-Serra

Now published in GigaScience doi: 10.1093/gigascience/giaa007 Stephen J. Bush 1Nuffield Department of Medicine, University of Oxford, Oxford, UK2National Institute for Health Research Health Research Protection Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Stephen J. BushFor correspondence: stephen.bush@roslin.ed.ac.ukDona Foster 1Nuffield Department of Medicine, University of Oxford, Oxford, UK3National Institute for Health Research Oxford Biomedical Research Centre, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid W. Eyre 1Nuffield Department of Medicine, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for David W. EyreEmily L. Clark 4The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Emily L. ClarkNicola De Maio 1Nuffield Department of Medicine, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLiam P. Shaw 1Nuffield Department of Medicine, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Liam P. ShawNicole Stoesser 1Nuffield Department of Medicine, University of Oxford, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nicole StoesserTim E. A. Peto 1Nuffield Department of Medicine, University of Oxford, Oxford, UK2National Institute for Health Research Health Research Protection Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Oxford, UK3National Institute for Health Research Oxford Biomedical Research Centre, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDerrick W. Crook 1Nuffield Department of Medicine, University of Oxford, Oxford, UK2National Institute for Health Research Health Research Protection Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Oxford, UK3National Institute for Health Research Oxford Biomedical Research Centre, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteA. Sarah Walker 1Nuffield Department of Medicine, University of Oxford, Oxford, UK2National Institute for Health Research Health Research Protection Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Oxford, UK3National Institute for Health Research Oxford Biomedical Research Centre, Oxford, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giaa002 Miranda E. Pitt 1Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, 4072, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Miranda E. PittFor correspondence: miranda.pitt@imb.uq.edu.au l.coin@imb.uq.edu.auSon H. Nguyen 1Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, 4072, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Son H. NguyenTânia P.S. Duarte 1Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, 4072, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Tânia P.S. DuarteMark A.T. Blaskovich 1Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, 4072, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mark A.T. BlaskovichLachlan J.M. Coin 1Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, 4072, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lachlan J.M. CoinFor correspondence: miranda.pitt@imb.uq.edu.au l.coin@imb.uq.edu.au

Now published in GigaScience doi: 10.1093/gigascience/giz158 Mitsutaka Kadota 1Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), Kobe, 650-0047, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mitsutaka KadotaHisashi Miura 2Laboratory for Developmental Epigenetics, RIKEN BDR, Kobe, 650-0047, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Hisashi MiuraKaori Tanaka 1Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), Kobe, 650-0047, Japan3Division of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, 812-0054, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteIchiro Hiratani 2Laboratory for Developmental Epigenetics, RIKEN BDR, Kobe, 650-0047, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ichiro Hiratani

Now published in GigaScience doi: 10.1093/gigascience/giz160 Weiwen Wang 1Research School of Biology, the Australian National University, Canberra, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Weiwen WangFor correspondence: wei.wang@anu.edu.au rob.lanfear@anu.edu.auAshutosh Das 1Research School of Biology, the Australian National University, Canberra, Australia2Department of Genetics and Animal Breeding, Faculty of Veterinary Medicine, Chittagong Veterinary and Animal Sciences University, Chittagong, BangladeshFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ashutosh DasDavid Kainer 1Research School of Biology, the Australian National University, Canberra, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for David KainerMiriam Schalamun 1Research School of Biology, the Australian National University, Canberra, Australia3Institute of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences, Vienna, AustriaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Miriam SchalamunAlejandro Morales-Suarez 4Department of Biological Sciences, Macquarie University, Sydney, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alejandro Morales-SuarezBenjamin Schwessinger 1Research School of Biology, the Australian National University, Canberra, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Benjamin Schwessinger

Now published in GigaScience doi: 10.1093/gigascience/giz141 Lu Zhang 1Department of Computer Science, Hong Kong Baptist University2Department of Pathology, Stanford University3Department of Computer Science, Stanford UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXin Zhou 3Department of Computer Science, Stanford UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZiming Weng 2Department of Pathology, Stanford UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteArend Sidow 2Department of Pathology, Stanford University4Department of Genetics, Stanford UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: arend@stanford.edu

ABSTRACT

Now published in GigaScience doi: 10.1093/gigascience/giz132 Ekaterina Osipova 1Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany2Max Planck Institute for the Physics of Complex Systems, Dresden, Germany3Center for Systems Biology Dresden, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNikolai Hecker 1Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany2Max Planck Institute for the Physics of Complex Systems, Dresden, Germany3Center for Systems Biology Dresden, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichael Hiller 1Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany2Max Planck Institute for the Physics of Complex Systems, Dresden, Germany3Center for Systems Biology Dresden, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: hiller@mpi-cbg.de

Now published in GigaScience doi: 10.1093/gigascience/giz136 Joeri S. Strijk 1State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Forestry, Guangxi University, Nanning, Guangxi 530005, China2Biodiversity Genomics Team, Plant Ecophysiology & Evolution Group, Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Daxuedonglu 100, Nanning, Guangxi, 530005, China3Alliance for Conservation Tree Genomics, Pha Tad Ke Botanical Garden, PO Box 959, 06000 Luang Prabang, LaosFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Joeri S. StrijkFor correspondence: jsstrijk@hotmail.comDamien D. Hinsinger 2Biodiversity Genomics Team, Plant Ecophysiology & Evolution Group, Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Daxuedonglu 100, Nanning, Guangxi, 530005, China3Alliance for Conservation Tree Genomics, Pha Tad Ke Botanical Garden, PO Box 959, 06000 Luang Prabang, LaosFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Damien D. HinsingerFeng-Ping Zhang 4Evolutionary Ecology of Plant Reproductive Systems Group, Kunming Institute of Botany, Kunming, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKunFang Cao 1State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Forestry, Guangxi University, Nanning, Guangxi 530005, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz123 Robail Yasrab 1School of Computer Science, University of Nottingham, NG8 1BB, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Robail YasrabJonathan A Atkinson 2School of Biosciences, University of Nottingham, LE12 5RD, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jonathan A AtkinsonDarren M Wells 2School of Biosciences, University of Nottingham, LE12 5RD, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Darren M WellsAndrew P French 1School of Computer Science, University of Nottingham, NG8 1BB, UK2School of Biosciences, University of Nottingham, LE12 5RD, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Andrew P FrenchTony P Pridmore 1School of Computer Science, University of Nottingham, NG8 1BB, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Tony P PridmoreMichael P Pound 1School of Computer Science, University of Nottingham, NG8 1BB, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael P PoundFor correspondence: michael.pound@nottingham.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giz110 Varuna Chander 1Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRichard A. Gibbs 1Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFritz J. Sedlazeck 1Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Fritz J. SedlazeckFor correspondence: fritz.sedlazeck@bcm.edu

Now published in GigaScience doi: 10.1093/gigascience/giz087 Anne Senabouth 1Institute for Molecular Bioscience, University of Queensland, Brisbane, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSamuel W Lukowski 1Institute for Molecular Bioscience, University of Queensland, Brisbane, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJose Alquicira Hernandez 1Institute for Molecular Bioscience, University of Queensland, Brisbane, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStacey Andersen 1Institute for Molecular Bioscience, University of Queensland, Brisbane, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXin Mei 2South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteQuan H Nguyen 1Institute for Molecular Bioscience, University of Queensland, Brisbane, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJoseph E Powell 1Institute for Molecular Bioscience, University of Queensland, Brisbane, Australia3Queensland Brain Institute, University of Queensland, Brisbane, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz074 Timothy H. Webster 1School of Life Sciences, Arizona State UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Timothy H. WebsterMadeline Couse 2Child and Family Research Institute, University of British ColumbiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBruno M. Grande 3Department of Molecular Biology and Biochemistry, Simon Fraser UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Bruno M. GrandeEric Karlins 4Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of HealthFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTanya N. Phung 5Interdepartmental Program in Bioinformatics, UCLAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Tanya N. PhungPhillip A. Richmond 6Centre for Molecular Medicine and Therapeutics, University of British Columbia7BC Children’s HospitalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Phillip A. RichmondWhitney Whitford 8School of Biological Sciences, The University of AucklandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Whitney WhitfordMelissa A. Wilson Sayres 1School of Life Sciences, Arizona State University9Center for Evolution and Medicine, Arizona State UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Melissa A. Wilson Sayres

Now published in GigaScience doi: 10.1093/gigascience/giz084 Michael Kotliar 1Division of Allergy and Immunology, Cincinnati Children’s Hospital Medical Center and Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OHFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael KotliarAndrey V. Kartashov 1Division of Allergy and Immunology, Cincinnati Children’s Hospital Medical Center and Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OHFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Andrey V. KartashovArtem Barski 1Division of Allergy and Immunology, Cincinnati Children’s Hospital Medical Center and Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OH2Division of Human Genetics, Cincinnati Children’s Hospital Medical Center and Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OHFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Artem BarskiFor correspondence: Artem.Barski@cchmc.org

Now published in GigaScience doi: 10.1093/gigascience/giz063 Jay Ghurye 1Department of Computer Science, University of Maryland, College Park, MD2Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institute of Health, Bethesda, MDFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSergey Koren 2Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institute of Health, Bethesda, MDFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteScott T. Small 3Department of Biological Sciences, University of Notre Dame, South Bend, INFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSeth Redmond 4Infectious Disease and Microbiome Program, Broad Institute, Cambridge, MA5Department of Immunology and Infectious Disease, Harvard TH Chan School of Public Health, Boston, MAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePaul Howell 6Centers for Disease Control, Atlanta, GAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAdam M. Phillippy 2Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institute of Health, Bethesda, MDFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNora J. Besansky 3Department of Biological Sciences, University of Notre Dame, South Bend, INFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz037 Mathieu Bourgey 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: guil.bourque@mcgill.ca mathieu.bourgey@mcgill.caRola Dali 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteRobert Eveleigh 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteKuang Chung Chen 3McGill HPC Centre, McGill University, Montréal, QC, Canada.4Calcul Québec, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteLouis Letourneau 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJoel Fillon 5Department of Human Genetics, McGill University, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMarc Michaud 2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMaxime Caron 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.5Department of Human Genetics, McGill University, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJohanna Sandoval 6Beaulieu-Saucier Université de Montréal Pharmacogenomics Centre, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFrancois Lefebvre 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteGary Leveque 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteEloi Mercier 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid Bujold 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePascale Marquis 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePatrick Tran Van 7Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid Morais 8Centre de calcul scientifique (ccs) - Université de Sherbrooke, Sherbrooke, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJulien Tremblay 9Energy, Mining and Environment, National Research Council Canada, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiaojian Shao 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteEdouard Henrion 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteEmmanuel Gonzalez 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this sitePierre-Olivier Quirion 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteBryan Caron 3McGill HPC Centre, McGill University, Montréal, QC, Canada.4Calcul Québec, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteGuillaume Bourque 1Canadian Centre for Computational Genomics, Montréal, QC, Canada.2McGill University and Genome Québec Innovation Center, Montréal, QC, Canada.5Department of Human Genetics, McGill University, Montréal, QC, Canada.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: guil.bourque@mcgill.ca mathieu.bourgey@mcgill.ca

Now published in GigaScience doi: 10.1093/gigascience/giz064 Amartya Singh 1Department of Physics and Astronomy, Rutgers University, Piscataway, NJ, USA2Center for Systems and Computational Biology, Rutgers Cancer Institute, Rutgers University, New Brunswick, NJ, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGyan Bhanot 1Department of Physics and Astronomy, Rutgers University, Piscataway, NJ, USA2Center for Systems and Computational Biology, Rutgers Cancer Institute, Rutgers University, New Brunswick, NJ, USA3Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, NJ, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHossein Khiabanian 1Department of Physics and Astronomy, Rutgers University, Piscataway, NJ, USA2Center for Systems and Computational Biology, Rutgers Cancer Institute, Rutgers University, New Brunswick, NJ, USA3Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, NJ, USA4Department of Pathology and Laboratory Medicine, Rutgers Robert Wood Johnson Medical School, Rutgers University, New Brunswick, NJ, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Hossein Khiabanian

Now published in GigaScience doi: 10.1093/gigascience/giz077 Lu Gan Department of Biological Sciences and Centre for BioImaging Sciences, National University of Singapore, Singapore 117543Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lu GanFor correspondence: lu@anaphase.orgCai Tong Ng Department of Biological Sciences and Centre for BioImaging Sciences, National University of Singapore, Singapore 117543Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Cai Tong NgChen Chen Department of Biological Sciences and Centre for BioImaging Sciences, National University of Singapore, Singapore 117543Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteShujun Cai Department of Biological Sciences and Centre for BioImaging Sciences, National University of Singapore, Singapore 117543Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Shujun Cai

Now published in GigaScience doi: 10.1093/gigascience/giz047 Yi Zhao 1BGI-Shenzhen, Shenzhen 518083, China3School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510006, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiao Li 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJingwan Wang 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZiyun Wan 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKai Gao 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGang Yi 4Shanghai Institute of Immunology, Shanghai JiaoTong University School of Medicine, Shanghai 200025, China; Department of Immunology and Microbiology, Shanghai JiaoTong University School of Medicine, Shanghai 200025, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXie Wang 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJinghua Wu 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBingbing Fan 2Shenzhen Second People's Hospital, First Affiliated Hospital of Shenzhen University, Shenzhen 518035, Guangdong Province, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWei Zhang 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFang Chen 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHuanming Yang 1BGI-Shenzhen, Shenzhen 518083, China5James D. Watson Institute of Genome Sciences, Hangzhou 310058, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJian Wang 1BGI-Shenzhen, Shenzhen 518083, China5James D. Watson Institute of Genome Sciences, Hangzhou 310058, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXun Xu 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBin Li 1BGI-Shenzhen, Shenzhen 518083, China4Shanghai Institute of Immunology, Shanghai JiaoTong University School of Medicine, Shanghai 200025, China; Department of Immunology and Microbiology, Shanghai JiaoTong University School of Medicine, Shanghai 200025, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShiping Liu 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWeihua Zhao 2Shenzhen Second People's Hospital, First Affiliated Hospital of Shenzhen University, Shenzhen 518035, Guangdong Province, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYong Flou 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiao Liu 1BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz055 Angela Tam 1Centre de Recherche de l’Institut Universitaire de Gériatrie de Montréal, Montréal, CA2Douglas Hospital Research Centre, McGill University, Montréal, CA3McGill University, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Angela TamFor correspondence: angela.tam@mail.mcgill.ca pierre.bellec@criugm.qc.caChristian Dansereau 1Centre de Recherche de l’Institut Universitaire de Gériatrie de Montréal, Montréal, CA4Département d’Informatique et de recherche opérationnelle, Université de Montréal, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYasser Itturia-Medina 3McGill University, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSebastian Urchs 3McGill University, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePierre Orban 1Centre de Recherche de l’Institut Universitaire de Gériatrie de Montréal, Montréal, CA5Centre de Recherche de l’Institut Universitaire en Santé Mentale de Montréal, Montréal, CA6Département de Psychiatrie, Université de Montréal, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHanad Sharmarke 1Centre de Recherche de l’Institut Universitaire de Gériatrie de Montréal, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJohn Breitner 2Douglas Hospital Research Centre, McGill University, Montréal, CA3McGill University, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePierre Bellec 1Centre de Recherche de l’Institut Universitaire de Gériatrie de Montréal, Montréal, CA4Département d’Informatique et de recherche opérationnelle, Université de Montréal, Montréal, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: angela.tam@mail.mcgill.ca pierre.bellec@criugm.qc.ca

Now published in GigaScience doi: 10.1093/gigascience/giz043 Samuel M. Nicholls 1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Samuel M. NichollsJoshua C. Quick 1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Joshua C. QuickShuiquan Tang 2Zymo Research Corporation, Irvine, California, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNicholas J. Loman 1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nicholas J. Loman

Now published in GigaScience doi: 10.1093/gigascience/giz028 Venice Juanillas 1International Rice Research Institute, Manila, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlexis Dereeper 2Institut de recherche pour le développement (IRD), University of Montpellier, DIADE, IPME, Montpellier, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alexis DereeperNicolas Beaume 1International Rice Research Institute, Manila, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nicolas BeaumeGaetan Droc 3CIRAD, UMR AGAP, F-34398 Montpellier, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gaetan DrocJoshua Dizon 1International Rice Research Institute, Manila, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJohn Robert Mendoza 8Advanced Science and Technology Institute, Department of Science and Technology, Quezon City, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJon Peter Perdon 8Advanced Science and Technology Institute, Department of Science and Technology, Quezon City, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLocedie Mansueto 1International Rice Research Institute, Manila, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLindsay Triplett 7Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO 80523-1177Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lindsay TriplettJillian Lang 7Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO 80523-1177Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jillian LangGabriel Zhou 4Indiana University, 107 S Indiana Ave, Bloomington, IN 47405, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKunalan Ratharanjan 4Indiana University, 107 S Indiana Ave, Bloomington, IN 47405, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kunalan RatharanjanBeth Plale 4Indiana University, 107 S Indiana Ave, Bloomington, IN 47405, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Beth PlaleJason Haga 5National Institute of Advanced Industrial Science and Technology, AIST Tsukuba Central 1,1-1-1 Umezono, Tsukuba, Ibaraki 305-8560 JAPANFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jason HagaJan E. Leach 7Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO 80523-1177Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jan E. LeachManuel Ruiz 3CIRAD, UMR AGAP, F-34398 Montpellier, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichael Thomson 1International Rice Research Institute, Manila, Philippines6Department of Soil and Crop Sciences, Texas A&M University, Houston, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNickolai Alexandrov 1International Rice Research Institute, Manila, Philippines10Inari Agriculture Inc., 200 Sidney St, Cambridge, Massachusetts, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePierre Larmande 2Institut de recherche pour le développement (IRD), University of Montpellier, DIADE, IPME, Montpellier, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Pierre LarmandeTobias Kretzschmar 1International Rice Research Institute, Manila, Philippines9Southern Cross Plant Science, Southern Cross University, Lismore, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRamil P. Mauleon 1International Rice Research Institute, Manila, PhilippinesFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ramil P. Mauleon

Now published in GigaScience doi: 10.1093/gigascience/giz059 Bruno Louro 1CCMAR Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGianluca De Moro 1CCMAR Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCarlos Garcia 1CCMAR Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCymon J. Cox 1CCMAR Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAna Veríssimo 2CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO, Laboratório Associado, Universidade do Porto, Vairão, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStephen J. Sabatino 2CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO, Laboratório Associado, Universidade do Porto, Vairão, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAntónio M. Santos 2CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO, Laboratório Associado, Universidade do Porto, Vairão, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAdelino V. M. Canário 1CCMAR Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, PortugalFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Adelino V. M. CanárioFor correspondence: acanario@ualg.pt

Now published in GigaScience doi: 10.1093/gigascience/giz061 Martijn R. Molenaar §Department of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, 3584 CM, Utrecht, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Martijn R. MolenaarAike Jeucken §Department of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, 3584 CM, Utrecht, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTsjerk A. Wassenaar ‡Groningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteChris H. A. van de Lest §Department of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, 3584 CM, Utrecht, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJos F. Brouwers §Department of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, 3584 CM, Utrecht, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJ. Bernd Helms §Department of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, 3584 CM, Utrecht, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: J.B.Helms@uu.nl

Now published in GigaScience doi: 10.1093/gigascience/giz030 Matthew A. Conte 1Department of Biology, University of Maryland, College Park, MD 20742, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRajesh Joshi 2Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, Ås, NorwayFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEmily C. Moore 3Department of Biological Sciences and W. M. Keck Center for Behavioral Biology, North Carolina State University, Raleigh, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSri Pratima Nandamuri 1Department of Biology, University of Maryland, College Park, MD 20742, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWilliam J. Gammerdinger 1Department of Biology, University of Maryland, College Park, MD 20742, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteReade B. Roberts 3Department of Biological Sciences and W. M. Keck Center for Behavioral Biology, North Carolina State University, Raleigh, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKaren L. Carleton 1Department of Biology, University of Maryland, College Park, MD 20742, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSigbjørn Lien 2Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, Ås, NorwayFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteThomas D. Kocher 1Department of Biology, University of Maryland, College Park, MD 20742, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz026 Justin Jiang 1Department of Biology, Harvey Mudd College, 1250 N. Dartmouth Ave, Claremont, CA 91711, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Justin JiangAndrea M. Quattrini 1Department of Biology, Harvey Mudd College, 1250 N. Dartmouth Ave, Claremont, CA 91711, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Andrea M. QuattriniWarren R. Francis 2University of Southern Denmark, Dept. of Biology, Campusvej 55, Odense M 5230, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Warren R. FrancisJoseph F. Ryan 3Whitney Laboratory for Marine Bioscience, University of Florida, 9505 Ocean Shore Blvd. St. Augustine, FL 32080, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEstefanía Rodríguez 4Division of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Estefanía RodríguezCatherine S. McFadden 1Department of Biology, Harvey Mudd College, 1250 N. Dartmouth Ave, Claremont, CA 91711, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Catherine S. McFadden

Now published in GigaScience doi: 10.1093/gigascience/giz033 Wenbo Chen 1Boyce Thompson Institute, 533 Tower Road, Ithaca NY 14853Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Wenbo ChenSara Shakir 1Boyce Thompson Institute, 533 Tower Road, Ithaca NY 148533Plant Genetics Lab, Gembloux Agro-Bio Tech, University of Liège, Gembloux, BelgiumFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sara ShakirMahdiyeh Bigham 1Boyce Thompson Institute, 533 Tower Road, Ithaca NY 14853Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mahdiyeh BighamZhangjun Fei 1Boyce Thompson Institute, 533 Tower Road, Ithaca NY 148532US Department of Agriculture-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY, 14853, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Zhangjun FeiGeorg Jander 1Boyce Thompson Institute, 533 Tower Road, Ithaca NY 14853Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Georg JanderFor correspondence: gj32@cornell.edu

Now published in GigaScience doi: 10.1093/gigascience/giz024 Ermin Hodzic 1Laboratory for Advanced Genome Analysis, Vancouver Prostate Centre, Vancouver, BC, Canada2School of Computing Science, Simon Fraser University, Burnaby, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRaunak Shrestha 1Laboratory for Advanced Genome Analysis, Vancouver Prostate Centre, Vancouver, BC, Canada3Department of Urologic Sciences, University of British Columbia, Vancouver, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Raunak ShresthaKaiyuan Zhu 4Department of Computer Science, Indiana University, Bloomington, IN, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKuoyuan Cheng 5Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteColin C. Collins 1Laboratory for Advanced Genome Analysis, Vancouver Prostate Centre, Vancouver, BC, Canada3Department of Urologic Sciences, University of British Columbia, Vancouver, BC, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteS. Cenk Sahinalp 1Laboratory for Advanced Genome Analysis, Vancouver Prostate Centre, Vancouver, BC, Canada4Department of Computer Science, Indiana University, Bloomington, IN, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for S. Cenk SahinalpFor correspondence: cenksahi@indiana.edu

Now published in GigaScience doi: 10.1093/gigascience/giz040 Brent S. Pedersen 1Department of Human Genetics, University of Utah. Salt Lake City, UT3USTAR Center for Genetic Discovery, University of Utah. Salt Lake City, UTFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Brent S. PedersenAaron R. Quinlan 1Department of Human Genetics, University of Utah. Salt Lake City, UT2Department of Biomedical Informatics, University of Utah. Salt Lake City, UT3USTAR Center for Genetic Discovery, University of Utah. Salt Lake City, UTFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Aaron R. Quinlan

Now published in GigaScience doi: 10.1093/gigascience/giz052 Tazro Ohta 1Database Center for Life Science, Joint Support-Center for Data Science Research, Research Organization of Information and Systems, Yata 1111, Mishima, Shizuoka 411-8540, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Tazro OhtaTomoya Tanjo 2National Institute of Informatics, Research Organization of Information and Systems, Tokyo 101–8430, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Tomoya TanjoOsamu Ogasawara 3DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, JapanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Osamu Ogasawara

Now published in GigaScience doi: 10.1093/gigascience/giz045 Ren-Hua Chung 1Division of Biostatistics and Bioinformatics, Institute of Population Health Sciences, National Health Research Institutes, Zhunan, TaiwanFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: rchung@nhri.org.twChen-Yu Kang 1Division of Biostatistics and Bioinformatics, Institute of Population Health Sciences, National Health Research Institutes, Zhunan, TaiwanFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giz044 Samuel Lampa 1Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden2Department of Biochemistry and Biophysics, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Stockholm University, Stockholm, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Samuel LampaMartin Dahlö 1Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Martin DahlöJonathan Alvarsson 1Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jonathan AlvarssonOla Spjuth 1Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ola Spjuth

Now published in GigaScience doi: 10.1093/gigascience/giy163 Pirita Paajanen 1Earlham Institute, Norwich, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteGeorge Kettleborough 1Earlham Institute, Norwich, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for George KettleboroughElena López-Girona 2The James Hutton Institute, Invergowrie, Dundee, UK.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichael Giolai 1Earlham Institute, Norwich, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDarren Heavens 1Earlham Institute, Norwich, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid Baker 1Earlham Institute, Norwich, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteAshleigh Lister 1Earlham Institute, Norwich, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ashleigh ListerGail Wilde 2The James Hutton Institute, Invergowrie, Dundee, UK.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteIngo Hein 2The James Hutton Institute, Invergowrie, Dundee, UK.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteIain Macaulay 1Earlham Institute, Norwich, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Iain MacaulayGlenn J. Bryan 2The James Hutton Institute, Invergowrie, Dundee, UK.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMatthew D. Clark 1Earlham Institute, Norwich, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Matthew D. ClarkFor correspondence: matt.clark@earlham.ac.uk

Abstract

Now published in GigaScience doi: 10.1093/gigascience/giz018 Laura-jayne Gardiner 1Earlham Institute, Norwich, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteThomas Brabbs 1Earlham Institute, Norwich, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlina Akhunova 2Kansas State University, Department of Plant Pathology, Manhattan, KS, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHikmet Budak 3Montana State University, Department of Plant Sciences and Plant Pathology, Bozeman, MT, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTodd Richmond 4Roche Sequencing Solutions, Seattle, WA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSukwinder Singh 5CIMMYT, Obregon, MexicoFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLeah Catchpole 1Earlham Institute, Norwich, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEduard Akhunov 2Kansas State University, Department of Plant Pathology, Manhattan, KS, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAnthony Hall 1Earlham Institute, Norwich, UK6School of Biological Sciences, University of East Anglia, Norwich, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

ABSTRACT

Now published in GigaScience doi: 10.1093/gigascience/giy121

Now published in GigaScience doi: 10.1093/gigascience/giy123 Ricardo Wurmus 1The Bioinformatics Platform, The Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Robert-Rössle-Strasse 10, 13125 Berlin, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBora Uyar 1The Bioinformatics Platform, The Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Robert-Rössle-Strasse 10, 13125 Berlin, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBrendan Osberg 1The Bioinformatics Platform, The Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Robert-Rössle-Strasse 10, 13125 Berlin, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteVedran Franke 1The Bioinformatics Platform, The Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Robert-Rössle-Strasse 10, 13125 Berlin, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlexander Gosdschan 1The Bioinformatics Platform, The Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Robert-Rössle-Strasse 10, 13125 Berlin, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKatarzyna Wreczycka 1The Bioinformatics Platform, The Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Robert-Rössle-Strasse 10, 13125 Berlin, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJonathan Ronen 1The Bioinformatics Platform, The Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Robert-Rössle-Strasse 10, 13125 Berlin, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAltuna Akalin 1The Bioinformatics Platform, The Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Robert-Rössle-Strasse 10, 13125 Berlin, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Altuna AkalinFor correspondence: altuna.akalin@mdc-berlin.de

Abstract

Abstract

Now published in GigaScience doi: 10.1093/gigascience/giy127 Xiaofeng Dong 1Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom2Department of Biological Sciences, Xi’an Jiaotong-Liverpool University, Suzhou 215123, China3School of Life Sciences, Jiangsu Normal University, Xuzhou 221116, China4Institute of Infection & Global Health, University of Liverpool, L3 5RF, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKittipong Chaisiri 4Institute of Infection & Global Health, University of Liverpool, L3 5RF, United Kingdom5Faculty of Tropical Medicine, Mahidol University, Ratchathewi Bangkok 10400, ThailandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDong Xia 4Institute of Infection & Global Health, University of Liverpool, L3 5RF, United Kingdom6The Royal Veterinary College, London NW1 0TU, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Dong XiaStuart D. Armstrong 4Institute of Infection & Global Health, University of Liverpool, L3 5RF, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYongxiang Fang 1Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Yongxiang FangMartin J. Donnelly 7Department of Vector Biology, Liverpool School of Tropical Medicine, Liverpool L3 5QA, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Martin J. DonnellyTatsuhiko Kadowaki 2Department of Biological Sciences, Xi’an Jiaotong-Liverpool University, Suzhou 215123, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Tatsuhiko KadowakiJohn W. McGarry 8Institute of Veterinary Science, University of Liverpool, Liverpool L3 5RP, United Kingdom.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlistair C. Darby 1Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alistair C. DarbyBenjamin L. Makepeace 4Institute of Infection & Global Health, University of Liverpool, L3 5RF, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Benjamin L. MakepeaceFor correspondence: blm1@liv.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giy142 Giulio Formenti 1Department of Environmental Science and Policy, University of Milan (Milan, Italy) Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Giulio FormentiFor correspondence: giulio.formenti@unimi.itMatteo Chiara 2Department of Biosciences, University of Milan (Milan, Italy) Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Matteo ChiaraFor correspondence: matteo.chiara@unimi.itLucy Poveda 3Functional Genomics Center of Zurich, University of Zurich, (Zurich, Switzerland) Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lucy PovedaFor correspondence: lucy.poveda@fgcz.uzh.chKees-Jan Francoijs 4Bionano Genomics (San Diego, CA, USA) Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kees-Jan FrancoijsFor correspondence: kfrancoijs@bionanogenomics.comAndrea Bonisoli-Alquati 5Department of Biological Sciences, California State Polytechnic University, Pomona (Pomona, CA, USA) Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Andrea Bonisoli-AlquatiFor correspondence: kfrancoijs@bionanogenomics.comLuca Canova 6Department of Biochemistry, University of Pavia (Pavia, Italy) Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Luca CanovaFor correspondence: canova@unipv.itLuca Gianfranceschi 7Department of Biosciences, University of Milan (Milan, Italy) Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Luca GianfranceschiFor correspondence: luca.gianfranceschi@unimi.itDavid Stephen Horner 8Department of Biosciences, University of Milan (Milan, Italy) Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for David Stephen HornerFor correspondence: david.horner@unimi.itNicola Saino 9Department of Environmental Science and Policy, University of Milan (Milan, Italy) Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Nicola SainoFor correspondence: nicola.saino@unimi.it

Now published in GigaScience doi: 10.1093/gigascience/giy137 Y. A. Tsepilov 1Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteS. Zh. Sharapov 1Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia2Novosibirsk State University, 630090 Novosibirsk, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteO. O. Zaytseva 1Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia2Novosibirsk State University, 630090 Novosibirsk, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJ. Krumsek 3Institute of Computational Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 Neuherberg, Germany.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteC. Prehn 4Institute of Experimental Genetics, Genome Analysis Center, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 Neuherberg, Germany.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteJ. Adamski 4Institute of Experimental Genetics, Genome Analysis Center, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 Neuherberg, Germany.5Institute of Experimental Genetics, Life and Food Science Center Weihenstephan, Technische Universität München, 85354 Freising-Weihenstephan, Germany6German Center for Diabetes Research, 85764 Neuherberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteG. Kastenmüller 7Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 Neuherberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteR. Wang-Sattler 6German Center for Diabetes Research, 85764 Neuherberg, Germany8Research Unit of Molecular Epidemiology, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 Neuherberg, Germany9Institute of Epidemiology II, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 Neuherberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteK. Strauch 10Institute of Genetic Epidemiology, Helmholtz Zentrum München - German Research Center for Environmental Health, 85764 Neuherberg, Germany11Institute of Medical Informatics, Biometry and Epidemiology, Chair of Genetic Epidemiology, Ludwig-Maximilians-Universität, 80539, Munich, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteC. Gieger 6German Center for Diabetes Research, 85764 Neuherberg, Germany8Research Unit of Molecular Epidemiology, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 Neuherberg, Germany9Institute of Epidemiology II, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 Neuherberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteY. S. Aulchenko 1Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia2Novosibirsk State University, 630090 Novosibirsk, RussiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: yurii@bionet.nsc.ru

Now published in GigaScience doi: 10.1093/gigascience/giy147 Angelica da Silva Lantyer Department of Neurophysiology, Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen - the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNiccolò Calcini Department of Neurophysiology, Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen - the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAte Bijlsma Department of Neurophysiology, Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen - the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKoen Kole Department of Neurophysiology, Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen - the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMelanie Emmelkamp Department of Neurophysiology, Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen - the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteManon Peeters Department of Neurophysiology, Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen - the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWim J. J. Scheenen Department of Neurophysiology, Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen - the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFleur Zeldenrust Department of Neurophysiology, Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen - the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTansu Celikel Department of Neurophysiology, Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen - the NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giy148 Chris-Andre Leimeister 1University of Göttingen, Department of Bioinformatics, Goldschmidtstr. 1, 37077 Göttingen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJendrik Schellhorn 1University of Göttingen, Department of Bioinformatics, Goldschmidtstr. 1, 37077 Göttingen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSvenja Schöbel 1University of Göttingen, Department of Bioinformatics, Goldschmidtstr. 1, 37077 Göttingen, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichael Gerth 2Institute for Integrative Biology, University of Liverpool, Biosciences Building, Crown Street, L69 7ZB Liverpool, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteChristoph Bleidorn 3University of Göttingen, Department of Animal Evolution and Biodiversity, Untere Karspüle 2, 37073 Göttingen, Germany4Museo Nacional de Ciencias Naturales, Spanish National Research Council (CSIC), 28006 Madrid, SpainFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBurkhard Morgenstern 1University of Göttingen, Department of Bioinformatics, Goldschmidtstr. 1, 37077 Göttingen, Germany5Göttingen Center of Molecular Biosciences (GZMB), Justus-von-Liebig-Weg 11, 37077 GöttingenFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giy149 Kristian Peters 1Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kristian PetersJames Bradbury 2School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSven Bergmann 3Department of Computational Biology, University of Lausanne, Lausanne, Switzerland4Swiss Institute of Bioinformatics, Lausanne, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMarco Capuccini 5Division of Scientific Computing, Department of Information Technology, Uppsala University, Sweden6Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24 Uppsala, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMarta Cascante 7Department of Biochemistry and Molecular Biomedicine, Universitat de Barcelona; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y DigestivasFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marta CascantePedro de Atauri 8Department of Biochemistry and Molecular Biomedicine, Universitat de Barcelona; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), Instituto de Salud Carlos III (ISCIII), SpainFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Pedro de AtauriTimothy M D Ebbels 9Department of Surgery & Cancer, Imperial College London, South Kensington, London, SW7 2AZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCarles Foguet 8Department of Biochemistry and Molecular Biomedicine, Universitat de Barcelona; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), Instituto de Salud Carlos III (ISCIII), SpainFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Carles FoguetRobert Glen 9Department of Surgery & Cancer, Imperial College London, South Kensington, London, SW7 2AZ, United Kingdom10Centre for Molecular Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB21EW, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlejandra Gonzalez-Beltran 11Oxford e-Research Centre, Department of Engineering Science, University of Oxford, 7 Keble Road, OX1 3QG, Oxford, UK.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alejandra Gonzalez-BeltranUlrich Guenther 22College of Medical and Dental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEvangelos Handakas 9Department of Surgery & Cancer, Imperial College London, South Kensington, London, SW7 2AZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteThomas Hankemeier 12Netherlands Metabolomics Center, Leiden, 2333 CC, Netherlands13Division of Systems Biomedicine and Pharmacology, Leiden Academic Centre for DrugFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Thomas HankemeierKenneth Haug 14European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kenneth HaugStephanie Herman 15Department of Medical Sciences, Clinical Chemistry, Uppsala University, 751 85 Uppsala, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Stephanie HermanPetr Holub 29BBMRI-ERIC, Graz, AustriaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Petr HolubMassimiliano Izzo 11Oxford e-Research Centre, Department of Engineering Science, University of Oxford, 7 Keble Road, OX1 3QG, Oxford, UK.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Massimiliano IzzoDaniel Jacob 16INRA, University of Bordeaux, Plateforme Métabolome Bordeaux-MetaboHUB, 33140 Villenave d’Ornon, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid Johnson 11Oxford e-Research Centre, Department of Engineering Science, University of Oxford, 7 Keble Road, OX1 3QG, Oxford, UK.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for David JohnsonFabien Jourdan 17INRA - French National Institute for Agricultural Research, UMR1331, Toxalim, Research Centre in Food Toxicology, Toulouse, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNamrata Kale 14European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Namrata KaleIbrahim Karaman 18Department of Epidemiology and Biostatistics, School of Public Health, Imperial College London, St. Mary’s Campus, Norfolk Place, W2 1PG, London, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ibrahim KaramanBita Khalili 3Department of Computational Biology, University of Lausanne, Lausanne, Switzerland4Swiss Institute of Bioinformatics, Lausanne, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePayam Emami Khonsari 15Department of Medical Sciences, Clinical Chemistry, Uppsala University, 751 85 Uppsala, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Payam Emami KhonsariKim Kultima 15Department of Medical Sciences, Clinical Chemistry, Uppsala University, 751 85 Uppsala, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kim KultimaSamuel Lampa 6Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24 Uppsala, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Samuel LampaAnders Larsson 19National Bioinformatics Infrastructure Sweden, Uppsala University, Uppsala, Sweden Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Anders LarssonChristian Ludwig 22College of Medical and Dental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePablo Moreno 14European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Pablo MorenoSteffen Neumann 1Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany20German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Steffen NeumannJon Ander Novella 19National Bioinformatics Infrastructure Sweden, Uppsala University, Uppsala, Sweden Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteClaire O’Donovan 14European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Claire O’DonovanJake TM Pearce 9Department of Surgery & Cancer, Imperial College London, South Kensington, London, SW7 2AZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jake TM PearceAlina Peluso 9Department of Surgery & Cancer, Imperial College London, South Kensington, London, SW7 2AZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alina PelusoLuca Pireddu 21Distributed Computing Group, CRS4, Pula, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Luca PiredduMichelle AC Reed 22College of Medical and Dental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michelle AC ReedPhilippe Rocca-Serra 11Oxford e-Research Centre, Department of Engineering Science, University of Oxford, 7 Keble Road, OX1 3QG, Oxford, UK.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Philippe Rocca-SerraPierrick Roger 23CEA, LIST, Laboratory for Data Analysis and Systems’ Intelligence, MetaboHUB, Gif-Sur-Yvette F-91191, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAntonio Rosato 24Magnetic Resonance Center (CERM) and Department of Chemistry, University of Florence and CIRMMP, 50019 Sesto Fiorentino, Florence, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Antonio RosatoRico Rueedi 3Department of Computational Biology, University of Lausanne, Lausanne, Switzerland4Swiss Institute of Bioinformatics, Lausanne, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Rico RueediChristoph Ruttkies 1Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Christoph RuttkiesNoureddin Sadawi 9Department of Surgery & Cancer, Imperial College London, South Kensington, London, SW7 2AZ, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Noureddin SadawiReza M Salek 25European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, U.KFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Reza M SalekSusanna-Assunta Sansone 11Oxford e-Research Centre, Department of Engineering Science, University of Oxford, 7 Keble Road, OX1 3QG, Oxford, UK.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Susanna-Assunta SansoneVitaly Selivanov 8Department of Biochemistry and Molecular Biomedicine, Universitat de Barcelona; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), Instituto de Salud Carlos III (ISCIII), SpainFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Vitaly SelivanovOla Spjuth 6Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24 Uppsala, SwedenFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ola SpjuthDaniel Schober 1Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Daniel SchoberEtienne A. Thévenot 23CEA, LIST, Laboratory for Data Analysis and Systems’ Intelligence, MetaboHUB, Gif-Sur-Yvette F-91191, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Etienne A. ThévenotMattia Tomasoni 3Department of Computational Biology, University of Lausanne, Lausanne, Switzerland4Swiss Institute of Bioinformatics, Lausanne, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMerlijn van Rijswijk 26ELIXIR-NL, Dutch Techcentre for Life Sciences, Utrecht, 3503 RM, Netherlands27Netherlands Metabolomics Center, Leiden, 2333 CC, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Merlijn van RijswijkMichael van Vliet 28Division of Systems Biomedicine and Pharmacology, Leiden Academic Centre for Drug Research (LACDR), Leiden University, Leiden, 2333 CC, The NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael van VlietMark R Viant 2School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mark R ViantRalf J. M. Weber 2School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGianluigi Zanetti 21Distributed Computing Group, CRS4, Pula, ItalyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gianluigi ZanettiChristoph Steinbeck 30Cheminformatics and Computational Metabolomics, Institute for Analytical Chemistry, Lessingstr. 8, 07743 Jena, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Christoph Steinbeck

Now published in GigaScience doi: 10.1093/gigascience/giy136 Fadhl M. Al-Akwaa 2Molecular Biology and Bioengineering Graduate Program, University of Hawaii at Monoa, Honolulu, HI, USA 96822Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Fadhl M. Al-AkwaaSijia Huang 1University of Hawaii Cancer Center, Department of Epidemiology, 701 Ilalo Street, Honolulu, HI USA 968132Molecular Biology and Bioengineering Graduate Program, University of Hawaii at Monoa, Honolulu, HI, USA 96822Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteLana X. Garmire 1University of Hawaii Cancer Center, Department of Epidemiology, 701 Ilalo Street, Honolulu, HI USA 968132Molecular Biology and Bioengineering Graduate Program, University of Hawaii at Monoa, Honolulu, HI, USA 96822Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: Lgarmire@cc.hawaii.edu

ABSTRACT

Now published in GigaScience doi: 10.1093/gigascience/giy158 Lisa K. Johnson 1Department of Population Health & Reproduction, School of Veterinary Medicine, University of California Davis2Molecular, Cellular, and Integrative Physiology Graduate Group, University of California DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lisa K. JohnsonHarriet Alexander 1Department of Population Health & Reproduction, School of Veterinary Medicine, University of California DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Harriet AlexanderC. Titus Brown 1Department of Population Health & Reproduction, School of Veterinary Medicine, University of California Davis2Molecular, Cellular, and Integrative Physiology Graduate Group, University of California Davis3Genome Center, University of California DavisFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for C. Titus Brown

Now published in GigaScience doi: 10.1093/gigascience/giy112 Simon P Sadedin 1Bioinformatics, Murdoch Childrens Research Institute, Royal Children's Hospital Flemington Road, Parkville, Victoria 3052 AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJustine A Ellis 2Genes Environment & Complex Disease, Murdoch Childrens Research Institute, Royal Children’s Hospital Flemington Road, Parkville, Victoria 3052 Australia3Department of Paediatrics, University of Melbourne, Victoria 3010 Australia4Centre for Social and Early Emotional Development, Faculty of Health, Deakin University, Burwood, Victoria 3125 AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Justine A EllisSeth L Masters 5Inflamation Division, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, Victoria 3052, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlicia Oshlack 1Bioinformatics, Murdoch Childrens Research Institute, Royal Children's Hospital Flemington Road, Parkville, Victoria 3052 Australia6Department of BioScience, University of Melbourne, Parkville 3050, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giy117 Zhouchun Shang 1Shanghai Tenth People’s Hospital, Tongji University School of Medicine, Shanghai, China2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, China4Shenzhen Engineering Laboratory for Innovative Molecular Diagnostics, BGI-Shenzhen, Shenzhen, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDongsheng Chen 2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteQuanlei Wang 2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, China4Shenzhen Engineering Laboratory for Innovative Molecular Diagnostics, BGI-Shenzhen, Shenzhen, China5BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShengpeng Wang 2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteQiuting Deng 2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLiang Wu 2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, China5BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China6Shenzhen Key Laboratory of Neurogenomics, BGI-Shenzhen, Shenzhen, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiangning Ding 2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShiyou Wang 2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJixing Zhong 2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDoudou Zhang 7Department of Neurosurgery, Shenzhen Second People’s Hospital, Shenzhen University 1st Affiliated Hospital, Shenzhen, Guangdong, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiaodong Cai 7Department of Neurosurgery, Shenzhen Second People’s Hospital, Shenzhen University 1st Affiliated Hospital, Shenzhen, Guangdong, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShida Zhu 2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, China4Shenzhen Engineering Laboratory for Innovative Molecular Diagnostics, BGI-Shenzhen, Shenzhen, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHuanming Yang 2BGI-Shenzhen, Shenzhen, China8James D. Watson Institute of Genome Sciences, Hangzhou, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLongqi Liu 2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJ. Lynn Fink 2BGI-Shenzhen, Shenzhen, China9The University of Queensland, Diamantina Institute (UQDI), Brisbane, QLD, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFang Chen 2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, China10Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen, DK-2100, Copenhagen, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiaoqing Liu 1Shanghai Tenth People’s Hospital, Tongji University School of Medicine, Shanghai, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZhengliang Gao 1Shanghai Tenth People’s Hospital, Tongji University School of Medicine, Shanghai, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: xuxun@genomics.cnXun Xu 2BGI-Shenzhen, Shenzhen, China3China National GeneBank, BGI-Shenzhen, Shenzhen, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: xuxun@genomics.cn

Now published in GigaScience doi: 10.1093/gigascience/giy103 Matthew Jacobson 1Michael Smith Laboratories, University of British Columbia2Department of Psychiatry, University of British ColumbiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAdriana Estela Sedeño-Cortés 3Graduate Program in Bioinformatics, University of British ColumbiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePaul Pavlidis 1Michael Smith Laboratories, University of British Columbia2Department of Psychiatry, University of British ColumbiaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Paul PavlidisFor correspondence: paul@msl.ubc.ca

Now published in GigaScience doi: 10.1093/gigascience/giy126 Jakub Pospíšil 1Department of Radioelectronics, Faculty of Electrical Engineering, Czech Technical University in Prague, Technická 2, 16627 Prague 6, Czech RepublicFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteTomáš Lukeš 1Department of Radioelectronics, Faculty of Electrical Engineering, Czech Technical University in Prague, Technická 2, 16627 Prague 6, Czech Republic2Laboratory of Nanoscale Biology, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, SwitzerlandFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJustin Bendesky 3UCCS center for the Biofrontiers Institute, University of Colorado at Colorado Springs, 1420 Austin Bluffs Parkway, Colorado Springs, Colorado, 80918, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKarel Fliegel 1Department of Radioelectronics, Faculty of Electrical Engineering, Czech Technical University in Prague, Technická 2, 16627 Prague 6, Czech RepublicFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKathrin Spendier 3UCCS center for the Biofrontiers Institute, University of Colorado at Colorado Springs, 1420 Austin Bluffs Parkway, Colorado Springs, Colorado, 80918, USA4Department of Physics and Energy Science, University of Colorado at Colorado Springs, 1420 Austin Bluffs Parkway, Colorado Springs, Colorado, 80918, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGuy M. Hagen 3UCCS center for the Biofrontiers Institute, University of Colorado at Colorado Springs, 1420 Austin Bluffs Parkway, Colorado Springs, Colorado, 80918, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Guy M. Hagen

Now published in GigaScience doi: 10.1093/gigascience/giy090 Jie Zheng 1MRC Integrative Epidemiology Unit, University of Bristol, Oakfield House, Bristol, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: jie.zheng@bristol.ac.uk tom.gaunt@bristol.ac.ukTom G. Richardson 1MRC Integrative Epidemiology Unit, University of Bristol, Oakfield House, Bristol, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteLouise A. C. Millard 1MRC Integrative Epidemiology Unit, University of Bristol, Oakfield House, Bristol, UK;2Intelligent Systems Laboratory, University of Bristol, Bristol, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteGibran Hemani 1MRC Integrative Epidemiology Unit, University of Bristol, Oakfield House, Bristol, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteChristopher Raistrick Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteBjarni Vilhjalmsson 3Århus Center for Bioinformatics BIRC, Aarhus UniversityFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePhilip Haycock 1MRC Integrative Epidemiology Unit, University of Bristol, Oakfield House, Bristol, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteTom R Gaunt 1MRC Integrative Epidemiology Unit, University of Bristol, Oakfield House, Bristol, UK;Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: jie.zheng@bristol.ac.uk tom.gaunt@bristol.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giy096 Sung-Huan Yu 1Institute of Molecular Infection Biology (IMIB), University of Würzburg, 97080 Würzburg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sung-Huan YuJörg Vogel 1Institute of Molecular Infection Biology (IMIB), University of Würzburg, 97080 Würzburg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jörg VogelKonrad U. Förstner 1Institute of Molecular Infection Biology (IMIB), University of Würzburg, 97080 Würzburg, Germany2Core Unit Systems Medicine, University of Würzburg, 97080 Würzburg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Konrad U. FörstnerFor correspondence: konrad.foerstner@uni-wuerzburg.de

Now published in GigaScience doi: 10.1093/gigascience/giy079 Breon M Schmidt 1Murdoch Children’s Research Institute, Royal Children’s Hospital, Flemington Road, Parkville, Vic, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNadia M Davidson 1Murdoch Children’s Research Institute, Royal Children’s Hospital, Flemington Road, Parkville, Vic, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAnthony DK Hawkins 1Murdoch Children’s Research Institute, Royal Children’s Hospital, Flemington Road, Parkville, Vic, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRay Bartolo 1Murdoch Children’s Research Institute, Royal Children’s Hospital, Flemington Road, Parkville, Vic, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteIan J Majewski 2Walter and Eliza Hall Institute of Medical Research, Royal Parade, Vic 3050, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePaul G Ekert 1Murdoch Children’s Research Institute, Royal Children’s Hospital, Flemington Road, Parkville, Vic, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlicia Oshlack 1Murdoch Children’s Research Institute, Royal Children’s Hospital, Flemington Road, Parkville, Vic, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alicia Oshlack

Now published in GigaScience doi: 10.1093/gigascience/giy081 Li Charlie Xia 1Division of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA 943052Department of Statistics, the Wharton School, University of Pennsylvania, Philadelphia, PA 18014Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Li Charlie XiaDongmei Ai 3School of Mathematics and Physics, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing 100083 P. R. ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHojoon Lee 1Division of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteNoemi Andor 1Division of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteChao Li 3School of Mathematics and Physics, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing 100083 P. R. ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNancy R. Zhang 2Department of Statistics, the Wharton School, University of Pennsylvania, Philadelphia, PA 18014Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteHanlee P. Ji 1Division of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA 943054Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94304Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: genomics_ji@stanford.edu

Now published in GigaScience doi: 10.1093/gigascience/giy083 Luke Zappia 1Bioinformatics, Murdoch Children’s Research Institute2School of Biosciences, University of MelbourneFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Luke ZappiaAlicia Oshlack 1Bioinformatics, Murdoch Children’s Research Institute2School of Biosciences, University of MelbourneFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alicia Oshlack

Now published in GigaScience doi: 10.1093/gigascience/giy086 Jang-il Sohn 1Department of Life Science, Hanyang University, Seoul 133-791, Republic of Korea2Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul 133-791, Republic of KoreaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKyoungwoo Nam 1Department of Life Science, Hanyang University, Seoul 133-791, Republic of KoreaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHyosun Hong 1Department of Life Science, Hanyang University, Seoul 133-791, Republic of KoreaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJun-Mo Kim 3Department of Animal Biotechnology & Environment, National Institute of Animal Science, RDA, Wanju 55365, Republic of KoreaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDajeong Lim 3Department of Animal Biotechnology & Environment, National Institute of Animal Science, RDA, Wanju 55365, Republic of KoreaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKyung-Tai Lee 3Department of Animal Biotechnology & Environment, National Institute of Animal Science, RDA, Wanju 55365, Republic of KoreaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYoon Jung Do 3Department of Animal Biotechnology & Environment, National Institute of Animal Science, RDA, Wanju 55365, Republic of KoreaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteChang Yeon Cho 4Animal Genetic Resource Research Center, National Institute of Animal Science, RDA, Namwon 55717, Republic of KoreaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteNamshin Kim 5Personalized Genomic Medicine Research Center, KRIBB, Daejeon 34141, Republic of KoreaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteHan-Ha Chae 3Department of Animal Biotechnology & Environment, National Institute of Animal Science, RDA, Wanju 55365, Republic of KoreaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJin-Wu Nam 1Department of Life Science, Hanyang University, Seoul 133-791, Republic of Korea2Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul 133-791, Republic of KoreaFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giy093 Luca Venturini 1Earlham Institute, Norwich Research Park, NR4 7UZ Norwich, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Luca VenturiniShabhonam Caim 1Earlham Institute, Norwich Research Park, NR4 7UZ Norwich, United Kingdom2Institute of Food Research, Norwich Research Park, NR4 7UA Norwich, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Shabhonam CaimGemy G Kaithakottil 1Earlham Institute, Norwich Research Park, NR4 7UZ Norwich, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Gemy G KaithakottilDaniel L Mapleson 1Earlham Institute, Norwich Research Park, NR4 7UZ Norwich, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Daniel L MaplesonDavid Swarbreck 1Earlham Institute, Norwich Research Park, NR4 7UZ Norwich, United KingdomFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for David SwarbreckFor correspondence: david.swarbreck@earlham.ac.uk

Now published in GigaScience doi: 10.1093/gigascience/giy092 Pai Zhang Institute of Technology, University of Washington, Tacoma, Washington 98402, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLing-Hong Hung Institute of Technology, University of Washington, Tacoma, Washington 98402, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteWes Lloyd Institute of Technology, University of Washington, Tacoma, Washington 98402, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKa Yee Yeung Institute of Technology, University of Washington, Tacoma, Washington 98402, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giy069 Fernando Meyer 1Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany2Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePeter Hofmann 1Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany2Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePeter Belmann 1Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany2Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany3Faculty of Technology, Bielefeld University, Bielefeld, Germany4Center for Biotechnology, Bielefeld University, Bielefeld, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRuben Garrido-Oter 5Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany6Cluster of Excellence on Plant Sciences (CEPLAS)Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteAdrian Fritz 1Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany2Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlexander Sczyrba 3Faculty of Technology, Bielefeld University, Bielefeld, Germany4Center for Biotechnology, Bielefeld University, Bielefeld, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlice C. McHardy 1Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany2Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: Alice.McHardy@helmholtz-hzi.de

Now published in GigaScience doi: 10.1093/gigascience/giy070 LM Simon 1Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for LM SimonAJ Westermann 2Institute for Molecular Infection Biology, University Würzburg, Würzburg, Germany3Helmholtz Institute for RNA-Based Infection Research (HIRI), Würzburg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteM Engel 1Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg, Germany4Helmholtz Zentrum München, German Research Center for Environmental Health, Scientific Computing Research Unit, Neuherberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAHA Elbehery 5Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Virology, Neuherberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteB Hense 1Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteM Heinig 1Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for M HeinigL Deng 5Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Virology, Neuherberg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFJ Theis 1Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg, Germany6Department of Mathematics, Technische Universität München, Munich, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for FJ Theis

Now published in GigaScience doi: 10.1093/gigascience/giy072 Alessia Visconti 1Department of Twin Research and Genetic Epidemiology, King’s College LondonFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alessia ViscontiFor correspondence: alessia.visconti@kcl.ac.ukTiphaine C. Martin 1Department of Twin Research and Genetic Epidemiology, King’s College LondonFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMario Falchi 1Department of Twin Research and Genetic Epidemiology, King’s College LondonFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giy073 Carlos A. Manacorda 1Instituto de Biotecnología, CICVyA, INTA, ArgentinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSebastian Asurmendi 1Instituto de Biotecnología, CICVyA, INTA, Argentina2CONICET, ArgentinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giy077 Yang-Min Kim 1Institut Pasteur, Human Genetics and Cognitive Functions Unit, Paris, France,2CNRS UMR 3571 Genes, Synapses and Cognition, Institut Pasteur, Paris, France,3University Paris Diderot, Sorbonne Paris Cité, Paris, France,4Centre de Bioinformatique, Biostatistique et Biologie Intégrative (C3BI, USR 3756 Institut Pasteur and CNRS), Paris, France,Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Yang-Min KimJean-Baptiste Poline 5Henry H. Wheeler Jr. Brain Imaging Center, Helen Wills Neuroscience Institute, University of California, Berkeley, California, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jean-Baptiste PolineGuillaume Dumas 1Institut Pasteur, Human Genetics and Cognitive Functions Unit, Paris, France,2CNRS UMR 3571 Genes, Synapses and Cognition, Institut Pasteur, Paris, France,3University Paris Diderot, Sorbonne Paris Cité, Paris, France,4Centre de Bioinformatique, Biostatistique et Biologie Intégrative (C3BI, USR 3756 Institut Pasteur and CNRS), Paris, France,Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Guillaume Dumas

Now published in GigaScience doi: 10.1093/gigascience/giy045 Nadia M Davidson 1Murdoch Childrens Research Institute, Royal Children’s Hospital, Victoria, Australia2School of Bio-Sciences, University of Melbourne, Victoria, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: nadia.davidson@mcri.edu.au alicia.oshlack@mcri.edu.auAlicia Oshlack 1Murdoch Childrens Research Institute, Royal Children’s Hospital, Victoria, Australia2School of Bio-Sciences, University of Melbourne, Victoria, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alicia OshlackFor correspondence: nadia.davidson@mcri.edu.au alicia.oshlack@mcri.edu.au

Now published in GigaScience doi: 10.1093/gigascience/giy048 Alex Di Genova 1Facultad de Ingenier´ıa y Ciencias, Universidad Adolfo Iba´n˜ez, Santiago, Chile.2Mathomics Bioinformatics Laboratory, Center for Mathematical Modeling, University of Chile, Av. Blanco Encalada 2120, 7th floor, Santiago, Chile.3Inria Grenoble Rhonˆe-Alpes, 655, Avenue de l’Europe, 38334 Montbonnot, France.4CNRS, UMR5558, Universite´ Claude Bernard Lyon 1, 43, Boulevard du 11 Novembre 1918, 69622 Villeurbanne, France.5Fondap Center for Genome Regulation, Av. Blanco Encalada 2085, 3rd floor, Santiago, Chile.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteGonzalo A. Ruz 1Facultad de Ingenier´ıa y Ciencias, Universidad Adolfo Iba´n˜ez, Santiago, Chile.6Center of Applied Ecology and Sustainability (CAPES), Santiago, Chile.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMarie-France Sagot 3Inria Grenoble Rhonˆe-Alpes, 655, Avenue de l’Europe, 38334 Montbonnot, France.4CNRS, UMR5558, Universite´ Claude Bernard Lyon 1, 43, Boulevard du 11 Novembre 1918, 69622 Villeurbanne, France.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: marie-france.sagot@inria.fr amaass@dim.uchile.clAlejandro Maass 2Mathomics Bioinformatics Laboratory, Center for Mathematical Modeling, University of Chile, Av. Blanco Encalada 2120, 7th floor, Santiago, Chile.5Fondap Center for Genome Regulation, Av. Blanco Encalada 2085, 3rd floor, Santiago, Chile.7Department of Mathematical Engineering, University of Chile, Av. Blanco Encalada 2120, 5th floor, Santiago, Chile.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: marie-france.sagot@inria.fr amaass@dim.uchile.cl

Now published in GigaScience doi: 10.1093/gigascience/giy053 Fu-Hao Lu 1John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteNeil McKenzie 1John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteGeorge Kettleborough 2The Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteDarren Heavens 2The Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMatthew D. Clark 2The Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichael W. Bevan 1John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael W. Bevan

Now published in GigaScience doi: 10.1093/gigascience/giy057 Bérénice Batut 1Bioinformatics Group, Department of Computer Science, University of Freiburg, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Bérénice BatutFor correspondence: berenice.batut@gmail.com pierre.peyret@uca.frKévin Gravouil 2Université Clermont Auvergne, INRA, MEDIS, F-63000 Clermont-Ferrand, France3Université Clermont Auvergne, CNRS, LMGE, F-63000 Clermont-Ferrand, France4Université Clermont Auvergne, CNRS, LIMOS, F-63000 Clermont-Ferrand, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kévin GravouilClémence Defois 2Université Clermont Auvergne, INRA, MEDIS, F-63000 Clermont-Ferrand, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSaskia Hiltemann 5Department of Bioinformatics, Erasmus University Medical Center, Rotterdam, 3015 CE, NetherlandsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Saskia HiltemannJean-François Brugère 2Université Clermont Auvergne, INRA, MEDIS, F-63000 Clermont-Ferrand, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEric Peyretaillade 2Université Clermont Auvergne, INRA, MEDIS, F-63000 Clermont-Ferrand, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this sitePierre Peyret 2Université Clermont Auvergne, INRA, MEDIS, F-63000 Clermont-Ferrand, FranceFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: berenice.batut@gmail.com pierre.peyret@uca.fr

Now published in GigaScience doi: 10.1093/gigascience/giy061 Kingshuk Mukherjee 1Department of Computer and Information Science and Engineering, University of Florida, GainesvilleFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: kingdgp@ufl.eduDarshan Washimkar 2Department of Computer Science, Colorado State University, Fort CollinsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMartin D. Muggli 2Department of Computer Science, Colorado State University, Fort CollinsFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLeena Salmela 3Department of Computer Science, Helsinki Institute for Information Technology HIIT, University of HelsinkiFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteChristina Boucher 1Department of Computer and Information Science and Engineering, University of Florida, GainesvilleFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/giy059 Swati Parekh 1Anthropology & Human Genomics, Department of Biology II, Ludwig-Maximilians University, 82152 Martinsried, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Swati ParekhChristoph Ziegenhain 1Anthropology & Human Genomics, Department of Biology II, Ludwig-Maximilians University, 82152 Martinsried, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Christoph ZiegenhainBeate Vieth 1Anthropology & Human Genomics, Department of Biology II, Ludwig-Maximilians University, 82152 Martinsried, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Beate ViethWolfgang Enard 1Anthropology & Human Genomics, Department of Biology II, Ludwig-Maximilians University, 82152 Martinsried, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteInes Hellmann 1Anthropology & Human Genomics, Department of Biology II, Ludwig-Maximilians University, 82152 Martinsried, GermanyFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ines Hellmann

Now published in GigaScience doi: 10.1093/gigascience/giy064 Jonathan R. Belyeu 1Department of Human Genetics, University of Utah, Salt Lake City, UT2USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UTFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jonathan R. BelyeuThomas J. Nicholas 1Department of Human Genetics, University of Utah, Salt Lake City, UT2USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UTFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Thomas J. NicholasBrent S. Pedersen 1Department of Human Genetics, University of Utah, Salt Lake City, UT2USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UTFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Brent S. PedersenThomas A. Sasani 1Department of Human Genetics, University of Utah, Salt Lake City, UT2USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UTFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Thomas A. SasaniJames M. Havrilla 1Department of Human Genetics, University of Utah, Salt Lake City, UT2USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UTFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStephanie N. Kravitz 1Department of Human Genetics, University of Utah, Salt Lake City, UT2USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UTFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Stephanie N. KravitzMegan E. Conway 1Department of Human Genetics, University of Utah, Salt Lake City, UTFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBrian K. Lohman 1Department of Human Genetics, University of Utah, Salt Lake City, UT2USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UTFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Brian K. LohmanAaron R. Quinlan 1Department of Human Genetics, University of Utah, Salt Lake City, UT2USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UT3Department of Biomedical Informatics, University of Utah, Salt Lake City, UT+To whom correspondence should be addressedFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Aaron R. QuinlanRyan M. Layer 1Department of Human Genetics, University of Utah, Salt Lake City, UT2USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UT+To whom correspondence should be addressedFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ryan M. Layer

Now published in GigaScience doi: 10.1093/gigascience/giy034 Florence McLean 1Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3JT, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Florence McLeanDuncan Berger 1Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3JT, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Duncan BergerDominik R. Laetsch 1Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3JT, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Dominik R. LaetschHillel T. Schwartz 2Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Hillel T. SchwartzMark Blaxter 1Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3JT, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Mark Blaxter

Now published in GigaScience doi: 10.1093/gigascience/giy033 Aaron Pomerantz 1Department of Integrative Biology, University of California, Berkeley, CA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: Pomerantz_aaron@berkeley.edu stprost@stanford.eduNicolás Peñafiel 2Centro de Investigación de la Biodiversidad y Cambio Climático (BioCamb) e Ingeniería en Biodiversidad y Recursos Genéticos, Facultad de Ciencias de Medio Ambiente, Universidad Tecnológica Indoamérica, Machala y Sabanilla, Quito, EcuadorFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLucas Bustamante 3Tropical Herping, Quito, EcuadorFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFrank Pichardo 3Tropical Herping, Quito, EcuadorFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLuis A. Coloma 4Centro Jambatu de Investigación y Conservación de Anfibios, Fundación Otonga, Quito, EcuadorFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCésar L. Barrio-Amorós 5Doc Frog Expeditions, Uvita, Costa RicaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDavid Salazar-Valenzuela 2Centro de Investigación de la Biodiversidad y Cambio Climático (BioCamb) e Ingeniería en Biodiversidad y Recursos Genéticos, Facultad de Ciencias de Medio Ambiente, Universidad Tecnológica Indoamérica, Machala y Sabanilla, Quito, EcuadorFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteStefan Prost 1Department of Integrative Biology, University of California, Berkeley, CA, USA6Program for Conservation Genomics, Department of Biology, Stanford University, Stanford, CA, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: Pomerantz_aaron@berkeley.edu stprost@stanford.edu

Now published in GigaScience doi: 10.1093/gigascience/giy037 Haotian Teng 1Institute for Molecular Bioscience, University of Queensland, St Lucia, Brisbane, QLD 4072 Australia Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: haotian.teng@uq.net.au l.coin@imb.uq.edu.auMinh Duc Cao 1Institute for Molecular Bioscience, University of Queensland, St Lucia, Brisbane, QLD 4072 Australia Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Minh Duc CaoMichael B. Hall 1Institute for Molecular Bioscience, University of Queensland, St Lucia, Brisbane, QLD 4072 Australia Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael B. HallTania Duarte 1Institute for Molecular Bioscience, University of Queensland, St Lucia, Brisbane, QLD 4072 Australia Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Tania DuarteSheng Wang 2Department of Human Genetics, University of Chicago, IL 60637, United States Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteLachlan J.M. Coin 1Institute for Molecular Bioscience, University of Queensland, St Lucia, Brisbane, QLD 4072 Australia Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Lachlan J.M. CoinFor correspondence: haotian.teng@uq.net.au l.coin@imb.uq.edu.au

Now published in GigaScience doi: 10.1093/gigascience/giy015 Harry A. Thorpe 1The Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath BA2 7AYFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Harry A. ThorpeSion C. Bayliss 1The Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath BA2 7AYFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Sion C. BaylissSamuel K. Sheppard 1The Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath BA2 7AYFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Samuel K. SheppardEdward J. Feil 1The Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath BA2 7AYFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Edward J. Feil

Abstract

Now published in GigaScience doi: 10.1093/gigascience/giy004 C Foulon aBrain Connectivity and Behaviour Group, Sorbonne Universities, Paris France.bFrontlab, Institut du Cerveau et de la Moelle épinière (ICM), UPMC UMRS 1127, Inserm U 1127, CNRS UMR 7225, Paris, France.cCentre de Neuroimagerie de Recherche CENIR, Groupe Hospitalier Pitié-Salpêtrière, Paris, France.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for C FoulonFor correspondence: hd.chrisfoulon@gmail.com michel.thiebaut@gmail.comL Cerliani aBrain Connectivity and Behaviour Group, Sorbonne Universities, Paris France.bFrontlab, Institut du Cerveau et de la Moelle épinière (ICM), UPMC UMRS 1127, Inserm U 1127, CNRS UMR 7225, Paris, France.cCentre de Neuroimagerie de Recherche CENIR, Groupe Hospitalier Pitié-Salpêtrière, Paris, France.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteS Kinkingnéhun aBrain Connectivity and Behaviour Group, Sorbonne Universities, Paris France.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteR Levy bFrontlab, Institut du Cerveau et de la Moelle épinière (ICM), UPMC UMRS 1127, Inserm U 1127, CNRS UMR 7225, Paris, France.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteC Rosso cCentre de Neuroimagerie de Recherche CENIR, Groupe Hospitalier Pitié-Salpêtrière, Paris, France.dAbnormal Movements and Basal Ganglia team, Inserm U 1127, CNRS UMR 7225, Sorbonne Universities, UPMC Univ Paris 06, Institut du Cerveau et de la Moelle épinière, ICM, Paris, FranceeAPHP, Urgences Cérébro-Vasculaires, Groupe Hospitalier Pitié-Salpêtrière, Paris, France.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteM Urbanski aBrain Connectivity and Behaviour Group, Sorbonne Universities, Paris France.bFrontlab, Institut du Cerveau et de la Moelle épinière (ICM), UPMC UMRS 1127, Inserm U 1127, CNRS UMR 7225, Paris, France.fMedicine and Rehabilitation Department, Hôpitaux de Saint-Maurice, Saint-Maurice, France.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteE Volle aBrain Connectivity and Behaviour Group, Sorbonne Universities, Paris France.bFrontlab, Institut du Cerveau et de la Moelle épinière (ICM), UPMC UMRS 1127, Inserm U 1127, CNRS UMR 7225, Paris, France.cCentre de Neuroimagerie de Recherche CENIR, Groupe Hospitalier Pitié-Salpêtrière, Paris, France.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteM Thiebaut de Schotten aBrain Connectivity and Behaviour Group, Sorbonne Universities, Paris France.bFrontlab, Institut du Cerveau et de la Moelle épinière (ICM), UPMC UMRS 1127, Inserm U 1127, CNRS UMR 7225, Paris, France.cCentre de Neuroimagerie de Recherche CENIR, Groupe Hospitalier Pitié-Salpêtrière, Paris, France.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: hd.chrisfoulon@gmail.com michel.thiebaut@gmail.com

Now published in GigaScience doi: 10.1093/gigascience/giy009 Rachael E. Workman 1Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAlexander M. Myrka 2Department of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada and Department of Cell & Systems Biology, University of Toronto, Toronto, Ontario, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteElizabeth Tseng 4Pacific Biosciences, Menlo Park, California, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteG. William Wong 3Department of Physiology and Center for Metabolism and Obesity Research, Johns Hopkins University School of Medicine, Baltimore, MD, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKenneth C. Welch Jr.2Department of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada and Department of Cell & Systems Biology, University of Toronto, Toronto, Ontario, CanadaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Kenneth C. Welch Jr.Winston Timp 1Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Winston Timp

Now published in GigaScience doi: 10.1093/gigascience/gix136 Quan H. Nguyen 1CSIRO Agriculture, 306 Carmody Road, St. Lucia, 4067, QLD, Australia2Divisions of Genomics of Development and Disease, Institute for Molecular Bioscience, University of Queensland, 306 Carmody Road, St. Lucia, 4067, QLD, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Quan H. NguyenRoss L. Tellam 1CSIRO Agriculture, 306 Carmody Road, St. Lucia, 4067, QLD, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Ross L. TellamMarina Naval-Sanchez 1CSIRO Agriculture, 306 Carmody Road, St. Lucia, 4067, QLD, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Marina Naval-SanchezLaercio R. Porto-Neto 1CSIRO Agriculture, 306 Carmody Road, St. Lucia, 4067, QLD, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Laercio R. Porto-NetoWilliam Barendse 3School of Veterinary Science, University of Queensland, Gatton, 4343, QLD, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for William BarendseAntonio Reverter 1CSIRO Agriculture, 306 Carmody Road, St. Lucia, 4067, QLD, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBenjamin Hayes 4The Queensland Alliance for Agriculture and Food Innovation (QAAFI), University of Queensland, 4067, QLD, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJames Kijas 1CSIRO Agriculture, 306 Carmody Road, St. Lucia, 4067, QLD, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for James KijasBrian P. Dalrymple 1CSIRO Agriculture, 306 Carmody Road, St. Lucia, 4067, QLD, Australia5Institute of Agriculture, The University of Western Australia, Perth, Western Australia, 6009, AustraliaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Brian P. DalrympleFor correspondence: brian.dalrymple@uwa.edu.au

Now published in GigaScience doi: 10.1093/gigascience/gix107 Joshua Lynch 1Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN, USA2Department of Ecology, Evolution, and Behavior, University of Minnesota, Minneapolis, MN, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteKaren Tang 1Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN, USA2Department of Ecology, Evolution, and Behavior, University of Minnesota, Minneapolis, MN, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSambhawa Priya 1Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN, USA2Department of Ecology, Evolution, and Behavior, University of Minnesota, Minneapolis, MN, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJoanna Sands 1Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN, USA2Department of Ecology, Evolution, and Behavior, University of Minnesota, Minneapolis, MN, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteMargaret Sands 1Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN, USA2Department of Ecology, Evolution, and Behavior, University of Minnesota, Minneapolis, MN, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteEvan Tang 1Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN, USA2Department of Ecology, Evolution, and Behavior, University of Minnesota, Minneapolis, MN, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDan Knights 4Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA5Biotechnology Institute, University of Minnesota, Minneapolis, MN, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: blekhman@umn.edu dknights@umn.eduRan Blekhman 1Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN, USA2Department of Ecology, Evolution, and Behavior, University of Minnesota, Minneapolis, MN, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: blekhman@umn.edu dknights@umn.edu

Now published in GigaScience doi: 10.1093/gigascience/gix117 Zhikai Liang 1Center for Plant Science Innovation, Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, 68503, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Zhikai LiangPiyush Pandey 2Department of Biological System Engineering, University of Nebraska-Lincoln, Lincoln, 68503, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteVincent Stoerger 3Plant Phenotyping Facilities Manager, University of Nebraska-Lincoln, Lincoln, 68503, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYuhang Xu 4Department of Statistics, University of Nebraska-Lincoln, Lincoln, 68503, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYumou Qiu 4Department of Statistics, University of Nebraska-Lincoln, Lincoln, 68503, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYufeng Ge 2Department of Biological System Engineering, University of Nebraska-Lincoln, Lincoln, 68503, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJames C. Schnable 1Center for Plant Science Innovation, Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, 68503, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for James C. Schnable

Now published in GigaScience doi: 10.1093/gigascience/gix134 Robert Bukowski 1Bioinformatics Facility, Institute of Biotechnology, Cornell University, Ithaca, NY 14853Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteXiaosen Guo 2BGI-Shenzhen, Shenzhen 518083, China3Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen, DenmarkFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYanli Lu 4Maize Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteCheng Zou 5Institute of Crop Science, Chinese Academy of Agricultural Sciences/National Key Facilities for Crop Gene Resource and Genetic Improvement, Beijing 100081, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBing He 2BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteZhengqin Rong 2BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBo Wang 2BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDawen Xu 2BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteBicheng Yang 2BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteChuanxiao Xie 5Institute of Crop Science, Chinese Academy of Agricultural Sciences/National Key Facilities for Crop Gene Resource and Genetic Improvement, Beijing 100081, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteLongjiang Fan 6Institute of Crop Science and Institute of Bioinformatics, Department of Agronomy, Zhejiang University, Hangzhou 310058, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteShibin Gao 4Maize Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteXun Xu 2BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteGengyun Zhang 2BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYingrui Li 2BGI-Shenzhen, Shenzhen 518083, ChinaFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteYinping Jiao 7Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJohn Doebley 8Department of Genetics, University of Wisconsin, Madison, Wisconsin, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteJeffrey Ross-Ibarra 9Department of Plant Sciences, University of California, Davis, California, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteVince Buffalo 9Department of Plant Sciences, University of California, Davis, California, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteM. Cinta Romay 10Institute for Genomic Diversity, Cornell University, Ithaca, NY 14853Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteEdward S. Buckler 10Institute for Genomic Diversity, Cornell University, Ithaca, NY 1485311US Department of Agriculture-Agricultural Research Service, Ithaca, NY 14853Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteYunbi Xu 5Institute of Crop Science, Chinese Academy of Agricultural Sciences/National Key Facilities for Crop Gene Resource and Genetic Improvement, Beijing 100081, China12International Maize and Wheat Improvement Center (CIMMYT), El Batan 56130, Texcoco, MexicoFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDoreen Ware 7Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteQi Sun 1Bioinformatics Facility, Institute of Biotechnology, Cornell University, Ithaca, NY 14853Find this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/gix096 Valerie De Anda 1Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, 70-275, Coyoacán 04510 México D.F.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Valerie De AndaFor correspondence: valdeanda@ciencias.unam.mx bcontreras@eead.csic.es souza@unam.mxIcoquih Zapata-Peñasco 2Dirección de Investigación en Transformación de Hidrocarburos. Instituto Mexicano del Petróleo, Eje Central Lázaro Cárdenas, Norte 152, Col. San Bartolo Atepehuacan, 07730, MéxicoFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAugusto Cesar Poot-Hernandez 3Departamento de Ingeniería de Sistemas Computacionales y Automatización. Sección de Ingeniería de Sistemas Computacionales. Instituto de Investigaciones en Matemáticas Aplicadas y en Sistemas.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteLuis E. Eguiarte 1Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, 70-275, Coyoacán 04510 México D.F.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteBruno Contreras-Moreira 4Estación Experimental de Aula Dei, Consejo Superior de Investigaciones Científicas (EEAD-CSIC), Avda. Montañana, 1005, Zaragoza 50059, Spain5Fundación ARAID, calle María de Luna 11, 50018 Zaragoza, SpainFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: valdeanda@ciencias.unam.mx bcontreras@eead.csic.es souza@unam.mxValeria Souza 1Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, 70-275, Coyoacán 04510 México D.F.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteFor correspondence: valdeanda@ciencias.unam.mx bcontreras@eead.csic.es souza@unam.mx

Now published in GigaScience doi: 10.1093/gigascience/gix097 Aleksey V. Zimin 1Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD2Institute for Physical Sciences and Technology, University of Maryland, College Park, MDFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteDaniela Puiu 1Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MDFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRichard Hall 3Pacific Biosciences, Menlo Park, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSarah Kingan 3Pacific Biosciences, Menlo Park, CAFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteSteven L. Salzberg 1Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD5Departments of Biomedical Engineering, Computer Science, and Biostatistics, Johns Hopkins University, Baltimore, MDFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Steven L. SalzbergFor correspondence: salzberg@jhu.edu

Now published in GigaScience doi: 10.1093/gigascience/gix090 Brent S. Pedersen 1Department of Human Genetics, University of Utah, Salt Lake City, UT3USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UTFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteRyan L. Collins 4Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA6Program in Medical and Population Genetics and Stanley Center for Psychiatric Research, Broad Institute, Cambridge, MA7Program in Bioinformatics and Integrative Genomics, Division of Medical Sciences, Harvard Medical School, Boston, MA.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMichael E. Talkowski 4Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA5Department of Neurology, Harvard Medical School, Boston, MA6Program in Medical and Population Genetics and Stanley Center for Psychiatric Research, Broad Institute, Cambridge, MA7Program in Bioinformatics and Integrative Genomics, Division of Medical Sciences, Harvard Medical School, Boston, MA.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteAaron R. Quinlan 1Department of Human Genetics, University of Utah, Salt Lake City, UT2Department of Biomedical Informatics, University of Utah, Salt Lake City, UT3USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UTFind this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/gix056 Gregory D. Marquart , Bethesda, MD 20892Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteKathryn M. Tabor , Bethesda, MD 20892Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMary Brown , Bethesda, MD 20892Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteHarold A. Burgess , Bethesda, MD 20892Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Harold A. Burgess

Now published in GigaScience doi: 10.1093/gigascience/gix078 Ling-Hong Hung 1Institute of Technology, Box 358426, University of Washington, Tacoma, WA.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteKaiyuan Shi 1Institute of Technology, Box 358426, University of Washington, Tacoma, WA.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteMigao Wu 1Institute of Technology, Box 358426, University of Washington, Tacoma, WA.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteWilliam Chad Young 2Department of Statistics, Box 354320, University of Washington, Seattle, WA.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteAdrian E. Raftery 2Department of Statistics, Box 354320, University of Washington, Seattle, WA.Find this author on Google ScholarFind this author on PubMedSearch for this author on this siteKa Yee Yeung 1Institute of Technology, Box 358426, University of Washington, Tacoma, WA.Find this author on Google ScholarFind this author on PubMedSearch for this author on this site

Now published in GigaScience doi: 10.1093/gigascience/gix083 Michael P. Pound 1The School of Computer Science, University of Nottingham,UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael P. PoundAlexandra J. Burgess 2The School of Biosciences, University of Nottingham, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Alexandra J. BurgessMichael H. Wilson 3Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Michael H. WilsonJonathan A. Atkinson 2The School of Biosciences, University of Nottingham, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Jonathan A. AtkinsonMarcus Griffiths 2The School of Biosciences, University of Nottingham, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAaron S. Jackson 1The School of Computer Science, University of Nottingham,UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteAdrian Bulat 1The School of Computer Science, University of Nottingham,UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteyorgos Tzimiropoulos 1The School of Computer Science, University of Nottingham,UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for yorgos TzimiropoulosDarren M. Wells 2The School of Biosciences, University of Nottingham, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Darren M. WellsErik H. Murchie 2The School of Biosciences, University of Nottingham, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Erik H. MurchieTony P. Pridmore 1The School of Computer Science, University of Nottingham,UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Tony P. PridmoreAndrew P. French 1The School of Computer Science, University of Nottingham,UK2The School of Biosciences, University of Nottingham, UKFind this author on Google ScholarFind this author on PubMedSearch for this author on this siteORCID record for Andrew P. FrenchFor correspondence: andrew.p.french@nottingham.ac.uk