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  1. Last 7 days
  2. www.sciencedirect.com www.sciencedirect.com
    Splenic fibroblasts control marginal zone B cell movement and function via two distinct Notch2-dependent regulatory programs
    1
    1. scibot 03 Jan 2025
      RRID:SCR_010910

      DOI: 10.1016/j.immuni.2024.12.003

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    sciencedirect.com/science/article/pii/S1074761324005673
  3. Dec 2024
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A genome-wide nucleosome-resolution map of promoter-centered interactions in human cells corroborates the enhancer-promoter looping model
    1
    1. scibot 22 Dec 2024
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      DOI: 10.7554/eLife.91596

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    pmc.ncbi.nlm.nih.gov/articles/PMC11651654/
  5. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Whole-genome re-sequencing of the Baikal seal and other phocid seals for a glimpse into their genetic diversity, demographic history, and phylogeny
    1
    1. scibot 22 Dec 2024
      RRID:SCR_010910

      DOI: 10.46471/gigabyte.142

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    pmc.ncbi.nlm.nih.gov/articles/PMC11602651/
  6. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Comprehensive genomic characterization of hematologic malignancies at a pediatric tertiary care center
    1
    1. scibot 22 Dec 2024
      SCR_010910

      DOI: 10.3389/fonc.2024.1498409

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    pmc.ncbi.nlm.nih.gov/articles/PMC11647012/
  7. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Dominant-negative TP53 mutations potentiated by the HSF1-regulated proteostasis network
    1
    1. scibot 21 Dec 2024
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      DOI: 10.1101/2024.11.01.621414

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    pmc.ncbi.nlm.nih.gov/articles/PMC11565964/
  8. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The chromosome-level genome assembly of an endangered herb Bergenia scopulosa provides insights into local adaptation and genomic vulnerability under climate change
    1
    1. scibot 21 Dec 2024
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      DOI: 10.1093/gigascience/giae091

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    pmc.ncbi.nlm.nih.gov/articles/PMC11604060/
  9. www.sciencedirect.com www.sciencedirect.com
    ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF
    1
    1. scibot 21 Dec 2024
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      DOI: 10.1016/j.molcel.2024.11.031

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    sciencedirect.com/science/article/pii/S1097276524009560
  10. www.sciencedirect.com www.sciencedirect.com
    Genomic insights into Neolithic founding paternal lineages around the Qinghai-Xizang Plateau using integrated YanHuang resource
    1
    1. scibot 14 Dec 2024
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      DOI: 10.1016/j.isci.2024.111456

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    sciencedirect.com/science/article/pii/S258900422402683X
  11. www.sciencedirect.com www.sciencedirect.com
    Population expansion from Central Plain to northern coastal China inferred from ancient human genomes
    1
    1. scibot 14 Dec 2024
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      DOI: 10.1016/j.isci.2024.111405

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    sciencedirect.com/science/article/pii/S2589004224026300
  12. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Reciprocal inhibition of NOTCH and SOX2 shapes tumor cell plasticity and therapeutic escape in triple-negative breast cancer
    1
    1. scibot 13 Dec 2024
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      DOI: 10.1038/s44321-024-00161-8

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    pmc.ncbi.nlm.nih.gov/articles/PMC11628624/
  13. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Association of Tumor Mutational Burden and PD-L1 with the Efficacy of Pembrolizumab with or without Chemotherapy versus Chemotherapy in Advanced Urothelial Carcinoma
    1
    1. scibot 12 Dec 2024
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      DOI: 10.1158/1078-0432.CCR-23-3518

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    pmc.ncbi.nlm.nih.gov/articles/PMC11609623/
  14. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Pan-Cancer Analysis of Homologous Recombination Deficiency in Cell Lines
    1
    1. scibot 11 Dec 2024
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      DOI: 10.1158/2767-9764.CRC-24-0316

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    pmc.ncbi.nlm.nih.gov/articles/PMC11621922/
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    Development and validation of the utLIFE-PC algorithm for noninvasive detection of prostate cancer in urine: A prospective, observational study
    1
    1. scibot 10 Dec 2024
      RRID:SCR_010910

      DOI: 10.1016/j.xcrm.2024.101870

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    sciencedirect.com/science/article/pii/S2666379124006414
  16. www.sciencedirect.com www.sciencedirect.com
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
    1
    1. scibot 02 Dec 2024
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      DOI: 10.1016/j.cell.2024.10.049

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    sciencedirect.com/science/article/pii/S0092867424012728
  17. Nov 2024
  18. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Chromosome-level genome assembly and annotation of the crested gecko, Correlophus ciliatus, a lizard incapable of tail regeneration
    1
    1. scibot 17 Nov 2024
      RRID:SCR_010910

      DOI: 10.46471/gigabyte.140

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    pmc.ncbi.nlm.nih.gov/articles/PMC11558660/
  19. 52.53.155.43 52.53.155.43
    ccr-24-1240-html.html
    1
    1. scibot 14 Nov 2024
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      DOI: 10.1158/1078-0432.ccr-24-1240

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    52.53.155.43/6cf3ca03fe9336b8c2f71d4e78c72374e9cc1cef/ccr-24-1240-html.html
  20. 52.53.155.43 52.53.155.43
    ccr-24-1233-html.html
    1
    1. scibot 14 Nov 2024
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      DOI: 10.1158/1078-0432.ccr-24-1233

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    52.53.155.43/6096bde77f665e6cda8cc666a53dcab1ee92da82/ccr-24-1233-html.html
  21. www.biorxiv.org www.biorxiv.org
    Human cartilage model of the precocious osteoarthritis-inducing COL2A1 p.Arg719Cys reveals pathology-driving matrix defects and a failure of the ER proteostasis network to recognize the defective procollagen-II
    1
    1. scibot 14 Nov 2024
      RRID:SCR_010910

      DOI: 10.1101/2024.11.07.622468

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    biorxiv.org/content/10.1101/2024.11.07.622468v1
  22. 52.53.155.43 52.53.155.43
    can-24-2248-html.html
    1
    1. scibot 08 Nov 2024
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      DOI: 10.1158/0008-5472.can-24-2248

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    52.53.155.43/cb43348561561308018a10a52d14c612773d9356/can-24-2248-html.html
  23. www.mdpi.com www.mdpi.com
    New Small-Molecule SERCA Inhibitors Enhance Treatment Efficacy in Lenvatinib-Resistant Papillary Thyroid Cancer
    1
    1. scibot 07 Nov 2024
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      DOI: 10.3390/ijms251910646

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    mdpi.com/1422-0067/25/19/10646
  24. Oct 2024
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Biomarker analyses investigating disease biology and associations with outcomes in the JAVELIN Merkel 200 trial of avelumab in metastatic Merkel cell carcinoma
    1
    1. scibot 04 Oct 2024
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      DOI: 10.1158/1078-0432.CCR-23-0395

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    ncbi.nlm.nih.gov/pmc/articles/PMC11443199/
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Clinical value of liquid biopsy in FGFR2 fusion-positive cholangiocarcinoma patients during targeted therapy
    1
    1. scibot 04 Oct 2024
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      DOI: 10.1158/1078-0432.CCR-23-3780

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    ncbi.nlm.nih.gov/pmc/articles/PMC11443220/
  27. www.biorxiv.org www.biorxiv.org
    MITF Targets in Gastrointestinal Stromal Tumors: Implications in Autophagy and Extracellular Vesicle Secretion
    1
    1. scibot 04 Oct 2024
      RRID:SCR_010910

      DOI: 10.1101/2024.09.10.612253

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    biorxiv.org/content/10.1101/2024.09.10.612253v1
  28. aacrjournals.org aacrjournals.org
    Conophylline Inhibits Hepatocellular Carcinoma by Inhibiting Activated Cancer-associated Fibroblasts Through Suppression of G Protein–coupled Receptor 68
    1
    1. scibot 02 Oct 2024
      SCR_010910

      DOI: 10.1158/1535-7163.MCT-20-0150

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    aacrjournals.org/mct/article/20/6/1019/673256/Conophylline-Inhibits-Hepatocellular-Carcinoma-by
  29. aacrjournals.org aacrjournals.org
    Systematic Analysis of Intronic miRNAs Reveals Cooperativity within the Multicomponent FTX Locus to Promote Colon Cancer Development
    1
    1. scibot 02 Oct 2024
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      DOI: 10.1158/0008-5472.CAN-20-1406

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    aacrjournals.org/cancerres/article/81/5/1308/649526/Systematic-Analysis-of-Intronic-miRNAs-Reveals
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Radiosensitizing Effect of PARP Inhibition on Chondrosarcoma and Chondrocyte Cells Is Dependent on Radiation LET
    1
    1. scibot 02 Oct 2024
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      DOI: 10.3390/biom14091071

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    ncbi.nlm.nih.gov/pmc/articles/PMC11429578/
  31. Sep 2024
  32. www.sciencedirect.com www.sciencedirect.com
    Bronze Age cheese reveals human-Lactobacillus interactions over evolutionary history
    1
    1. scibot 27 Sep 2024
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      DOI: 10.1016/j.cell.2024.08.008

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    sciencedirect.com/science/article/pii/S0092867424008997
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The selected genes NR6A1, RSAD2-CMPK2, and COL3A1 contribute to body size variation in Meishan pigs through different patterns
    1
    1. scibot 26 Sep 2024
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      DOI: 10.1093/jas/skad304

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    ncbi.nlm.nih.gov/pmc/articles/PMC10548407/
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Precision Oncology and Systemic Targeted Therapy in Pseudomyxoma Peritonei
    1
    1. scibot 25 Sep 2024
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      DOI: 10.1158/1078-0432.CCR-23-4072

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    ncbi.nlm.nih.gov/pmc/articles/PMC11393541/
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SJPedPanel: A pan-cancer gene panel for childhood malignancies to enhance cancer monitoring and early detection
    1
    1. scibot 25 Sep 2024
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      DOI: 10.1158/1078-0432.CCR-24-1063

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    ncbi.nlm.nih.gov/pmc/articles/PMC11393547/
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Proteogenomics of Prostate Cancer Radioresistance
    1
    1. scibot 25 Sep 2024
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      DOI: 10.1158/2767-9764.CRC-24-0292

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    ncbi.nlm.nih.gov/pmc/articles/PMC11411600/
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comprehensive Proteogenomic Profiling Reveals the Molecular Characteristics of Colorectal Cancer at Distinct Stages of Progression
    1
    1. scibot 12 Sep 2024
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      DOI: 10.1158/0008-5472.CAN-23-1878

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    ncbi.nlm.nih.gov/pmc/articles/PMC11372369/
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Detecting Small Cell Transformation in Patients with Advanced EGFR Mutant Lung Adenocarcinoma through Epigenomic cfDNA Profiling
    1
    1. scibot 05 Sep 2024
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      DOI: 10.1158/1078-0432.CCR-24-0466

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    ncbi.nlm.nih.gov/pmc/articles/PMC11369616/
  39. Aug 2024
  40. www.sciencedirect.com www.sciencedirect.com
    Genomic dynamics of the Lower Yellow River Valley since the Early Neolithic
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    1. scibot 21 Aug 2024
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      DOI: 10.1016/j.cub.2024.07.063

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    sciencedirect.com/science/article/pii/S0960982224010029
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome report: First reference genome of Vaccinium floribundum Kunth, an emblematic Andean species
    1
    1. scibot 21 Aug 2024
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      DOI: 10.1093/g3journal/jkae136

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    ncbi.nlm.nih.gov/pmc/articles/PMC11304950/
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Sequential Analysis of cfDNA Reveals Clonal Evolution in Patients with Neuroblastoma Receiving ALK-Targeted Therapy
    1
    1. scibot 18 Aug 2024
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      DOI: 10.1158/1078-0432.CCR-24-0753

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    ncbi.nlm.nih.gov/pmc/articles/PMC11292203/
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Impact of rare structural variant events in newly diagnosed multiple myeloma
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    1. scibot 18 Aug 2024
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      DOI: 10.1158/1078-0432.CCR-23-1045

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    ncbi.nlm.nih.gov/pmc/articles/PMC10841766/
  44. www.tandfonline.com www.tandfonline.com
    Candidate tumor-specific CD8+ T cell subsets identified in the malignant pleural effusion of advanced lung cancer patients by single-cell analysis
    1
    1. scibot 18 Aug 2024
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      DOI: 10.1080/2162402X.2024.2371556

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    tandfonline.com/doi/abs/10.1080/2162402X.2024.2371556
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-mitochondrion sequencing uncovers distinct mutational patterns and heteroplasmy landscape in mouse astrocytes and neurons
    1
    1. scibot 01 Aug 2024
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      DOI: 10.1186/s12915-024-01953-7

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    ncbi.nlm.nih.gov/pmc/articles/PMC11287894/
  46. Jul 2024
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    Advancing the Indian Cattle Pangenome: Characterizing Non-Reference Sequences in Bos indicus
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    Chemical mutagenesis of Listeria monocytogenes for increased tolerance to benzalkonium chloride shows independent genetic underpinnings and off-target antibiotic resistance
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  50. www.cell.com www.cell.com
    Further evidence from DNAH12 supports favorable fertility outcomes of infertile males with dynein axonemal heavy chain gene family variants
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  51. 52.53.155.43 52.53.155.43
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    The reference genome sequence of Artemisia argyi provides insights into secondary metabolism biosynthesis
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  53. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Candidate tumor-specific CD8+ T cell subsets identified in the malignant pleural effusion of advanced lung cancer patients by single-cell analysis
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    Placental co-transcriptional activator Vestigial-like 1 (VGLL1) drives tumorigenesis via increasing transcription of proliferation and invasion genes
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    Single-Mitochondrion Sequencing Uncovers Distinct Mutational Patterns and Heteroplasmy Landscape in Mouse Astrocytes and Neurons
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    The TERT Promoter is Polycomb-Repressed in Neuroblastoma Cells with Long Telomeres
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    Neoadjuvant sintilimab plus chemotherapy in EGFR-mutant NSCLC: Phase 2 trial interim results (NEOTIDE/CTONG2104)
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    LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome
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    Post-meiotic mechanism of facultative parthenogenesis in gonochoristic whiptail lizard species
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    Mechanisms of hepatic steatosis in chickens: integrated analysis of the host genome, molecular phenomics and gut microbiome
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    Genomic decoding of Theobroma grandiflorum (cupuassu) at chromosomal scale: evolutionary insights for horticultural innovation
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    Cell-type-specific effects of age and sex on human cortical neurons
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  65. May 2024
  66. www.sciencedirect.com www.sciencedirect.com
    Reciprocal conversion between annual and polycarpic perennial flowering behavior in the Brassicaceae
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  68. 52.53.155.43 52.53.155.43
    ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF
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  69. aacrjournals.org aacrjournals.org
    Germline mutations of Holliday junction resolvase genes in multiple primary malignancies involving lung cancer lead to PARP inhibitor sensitization
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    Response rate and molecular correlates to encorafenib and binimetinib in BRAF-V600E mutant high-grade glioma
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    The CD8+ T cell tolerance checkpoint triggers a distinct differentiation state defined by protein translation defects
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    Discovery of a novel potent EGFR inhibitor against EGFR activating mutations and on-target resistance in NSCLC
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    Ancient genomes revealed the complex human interactions of the ancient western Tibetans
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    Integrative molecular analyses of the MD Anderson prostate cancer patient-derived xenograft (MDA PCa PDX) series
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    Unraveling Genome- and Immunome-wide Genetic Diversity in Jaguars (Panthera onca): Implications for Targeted Conservation
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  77. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    Protocol for a comprehensive pipeline to study ancient human genomes
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  79. Apr 2024
  80. academic.oup.com academic.oup.com
    Korea4K: whole genome sequences of 4,157 Koreans with 107 phenotypes derived from extensive health check-ups
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    MYCN drives oncogenesis by cooperating with the histone methyltransferase G9a and the WDR5 adaptor to orchestrate global gene transcription
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    Telomere dysfunction alters intestinal stem cell dynamics to promote cancer
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    Whole genome assembly and annotation of the King Angelfish (Holacanthus passer) gives insight into the evolution of marine fishes of the Tropical Eastern Pacific
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  85. Mar 2024
  86. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic analysis using RNA sequencing and phenotypic analysis of Salmonella enterica after acid exposure for different time durations using adaptive laboratory evolution
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  87. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A novel type of monocytic leukemia stem cell revealed by the clinical use of venetoclax-based therapy
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    ncbi.nlm.nih.gov/pmc/articles/PMC10527971/
  88. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Patient derived tumoroids of high grade neuroendocrine neoplasms for more personalized therapies
    1
    1. scibot 06 Mar 2024
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      DOI: 10.1038/s41698-024-00549-2

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    ncbi.nlm.nih.gov/pmc/articles/PMC10907580/
  89. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Establishment and characterization of an Epstein-Barr virus-positive cell line from a non-keratinizing differentiated primary nasopharyngeal carcinoma
    1
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  90. www.sciencedirect.com www.sciencedirect.com
    Follicular lymphoma B cells exhibit heterogeneous transcriptional states with associated somatic alterations and tumor microenvironments
    2
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      DOI: 10.1016/j.xcrm.2024.101443

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    sciencedirect.com/science/article/pii/S2666379124000661
  91. Feb 2024
  92. aacrjournals.org aacrjournals.org
    Early Cancer Detection in Li-Fraumeni Syndrome with Cell-Free DNA
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    aacrjournals.org/cancerdiscovery/article/14/1/104/732565/Early-Cancer-Detection-in-Li-Fraumeni-Syndrome
  93. 52.53.155.43 52.53.155.43
    can-23-1129-html.html
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  94. www.biorxiv.org www.biorxiv.org
    Chemical mutagenesis of Listeria monocytogenes for increased tolerance to benzalkonium chloride shows independent genetic underpinnings and off-target antibiotic resistance
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      DOI: 10.1101/2023.12.11.571107

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    biorxiv.org/content/10.1101/2023.12.11.571107v1
  95. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Parkinson’s Disease Risk Enhancers in Microglia
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    ncbi.nlm.nih.gov/pmc/articles/PMC10845915/
  96. Jan 2024
  97. www.sciencedirect.com www.sciencedirect.com
    Genetic variants affecting NQO1 protein levels impact the efficacy of idebenone treatment in Leber hereditary optic neuropathy
    1
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    sciencedirect.com/science/article/pii/S2666379123006122
  98. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10795108/
  99. aacrjournals.org aacrjournals.org
    Early Cancer Detection in Li-Fraumeni Syndrome with Cell-Free DNA
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    aacrjournals.org/cancerdiscovery/article/14/1/104/732565/Early-Cancer-Detection-in-Li-Fraumeni-Syndrome
  100. www.nature.com www.nature.com
    A new genomic framework to categorize pediatric acute myeloid leukemia
    1
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  101. www.sciencedirect.com www.sciencedirect.com
    Recruitment of trimeric eIF2 by phosphatase non-catalytic subunit PPP1R15B
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  102. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multi-omics integration identifies cell-state-specific repression by PBRM1-PIAS1 cooperation
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  103. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Leveraging tissue-specific enhancer-target gene regulatory networks identifies enhancer somatic mutations that functionally impact lung cancer
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    ncbi.nlm.nih.gov/pmc/articles/PMC10758689/
  104. Dec 2023
  105. www.sciencedirect.com www.sciencedirect.com
    SARS-CoV-2 RNA stabilizes host mRNAs to elicit immunopathogenesis
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    sciencedirect.com/science/article/pii/S1097276523009784
  106. www.sciencedirect.com www.sciencedirect.com
    Integrated multi-omics profiling to dissect the spatiotemporal evolution of metastatic hepatocellular carcinoma
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  107. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mutational impact of APOBEC3A and APOBEC3B in a human cell line and comparisons to breast cancer
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  108. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Blimp-1 and c-Maf regulate  Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
    1
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  109. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Adaptive laboratory evolution of Salmonella enterica in acid stress
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  110. 52.53.155.43 52.53.155.43
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  111. 52.53.155.43 52.53.155.43
    can-23-1129-html.html
    1
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  112. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Is Gauchian genotyping of GBA1 variants reliable?
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    ncbi.nlm.nih.gov/pmc/articles/PMC10659459/
  113. Nov 2023
  114. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference assembly for the legume cover crop hairy vetch (Vicia villosa)
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  115. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Concurrent targeting of HDAC and PI3K to overcome phenotypic heterogeneity of castration-resistant and neuroendocrine prostate cancers
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  116. www.nature.com www.nature.com
    Preclinical evidence for the effective use of TL-895, a highly selective and potent second-generation BTK inhibitor, for the treatment of B-cell malignancies
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      DOI: 10.1038/s41598-023-47735-z

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  117. www.science.org www.science.org
    Interindividual variation in human cortical cell type abundance and expression
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      DOI: 10.1126/science.adf2359

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    science.org/doi/10.1126/science.adf2359
  118. dx.doi.org dx.doi.org
    Population-specific Mutation Patterns in Breast Tumors from African American, European American, and Kenyan Patients
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      DOI: 10.1158/2767-9764.CRC-23-0165

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    dx.doi.org/10.1158/2767-9764.CRC-23-0165
  119. wellcomeopenresearch.org wellcomeopenresearch.org
    Blimp-1 and c-Maf regulate Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
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    1. scibot 10 Nov 2023
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      DOI: 10.12688/wellcomeopenres.19680.1

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    wellcomeopenresearch.org/articles/8-403/v1
  120. www.sciencedirect.com www.sciencedirect.com
    Unveiling the metal mutation nexus: Exploring the genomic impacts of heavy metal exposure in lung adenocarcinoma and colorectal cancer
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      DOI: 10.1016/j.jhazmat.2023.132590

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  121. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Validation of the Clinical Use of GIScar, an Academic-developed Genomic Instability Score Predicting Sensitivity to Maintenance Olaparib for Ovarian Cancer
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      DOI: 10.1158/1078-0432.CCR-23-0898

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  122. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Clinical and Molecular Features of Long-term Response to Immune Checkpoint Inhibitors in Patients with Advanced Non–Small Cell Lung Cancer
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  123. Oct 2023
  124. www.sciencedirect.com www.sciencedirect.com
    Ancient genomes reveal millet farming-related demic diffusion from the Yellow River into southwest China
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      DOI: 10.1016/j.cub.2023.09.055

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  125. www.biorxiv.org www.biorxiv.org
    Chondrodysplasia-inducing COL2A1 p.Gly1170Ser causes an ER storage defect without associated unfolded protein response in a human cartilage model
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      DOI: 10.1101/2023.10.19.562780

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    biorxiv.org/content/10.1101/2023.10.19.562780v3
  126. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Associations between AI-Assisted Tumor Amphiregulin and Epiregulin IHC and Outcomes from Anti-EGFR Therapy in the Routine Management of Metastatic Colorectal Cancer
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  127. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Neoantigen targetability in progressive advanced melanoma
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  128. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Immune checkpoint inhibitor-related molecular markers predict prognosis in extrahepatic cholangiocarcinoma
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      DOI: 10.1002/cam4.6441

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    onlinelibrary.wiley.com/doi/10.1002/cam4.6441
  129. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MYCN driven oncogenesis involves cooperation with WDR5 to activate canonical MYC targets and G9a to repress differentiation genes
    1
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      DOI: 10.1101/2023.07.11.548643

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  130. 52.53.155.43 52.53.155.43
    ccr-23-1106-html.html
    1
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  131. www.sciencedirect.com www.sciencedirect.com
    Individualized tumor-informed circulating tumor DNA analysis for postoperative monitoring of non-small cell lung cancer
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  132. www.nature.com www.nature.com
    TET2 lesions enhance the aggressiveness of CEBPA-mutant acute myeloid leukemia by rebalancing GATA2 expression
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  133. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Allele-specific regulatory effects on the pig transcriptome
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      DOI: 10.1093/gigascience/giad076

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    ncbi.nlm.nih.gov/pmc/articles/PMC10541795/
  134. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level reference genome of tetraploid Isoetes sinensis provides insights into evolution and adaption of lycophytes
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  135. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Construction and analysis of the chromosome-level haplotype-resolved genomes of two Crassostrea oyster congeners: Crassostrea angulata and Crassostrea gigas
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  136. Sep 2023
  137. www.sciencedirect.com www.sciencedirect.com
    Variation in the CENP-A sequence association landscape across diverse inbred mouse strains
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      DOI: 10.1016/j.celrep.2023.113178

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  138. www.sciencedirect.com www.sciencedirect.com
    Perturbations in 3D genome organization can promote acquired drug resistance
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  139. www.sciencedirect.com www.sciencedirect.com
    Characterization of the male-specific region containing the candidate sex-determining gene in Amur catfish (Silurus asotus) using third-generation- and pool-sequencing data
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  140. www.nature.com www.nature.com
    A biobank of pediatric patient-derived-xenograft models in cancer precision medicine trial MAPPYACTS for relapsed and refractory tumors
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      DOI: 10.1038/s42003-023-05320-0

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  141. Aug 2023
  142. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale assembly of the yellow mealworm genome
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      DOI: 10.12688/openreseurope.13987.3

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  143. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids
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  144. www.sciencedirect.com www.sciencedirect.com
    The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr
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  145. 52.53.155.43 52.53.155.43
    Loss of CtBP2 may be a mechanistic link between metabolic derangements and progressive impairment of pancreatic β cell function
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  146. 52.53.155.43 52.53.155.43
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  147. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Distinct mechanisms of mismatch repair deficiency delineate two modes of response to PD-1 immunotherapy in endometrial carcinoma
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      DOI: 10.1158/2159-8290.CD-22-0686

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  148. www.sciencedirect.com www.sciencedirect.com
    Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks
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  149. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome resequencing reveals independent domestication and breeding improvement of naked oat
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  150. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Clinical features associated with outcomes and biomarker analysis of dabrafenib plus trametinib treatment in patients with BRAF-mutant melanoma brain metastases
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  151. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characterizing the Immune Microenvironment and Neoantigen Landscape of Hürthle Cell Carcinoma to Identify Potential Immunologic Vulnerabilities
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      DOI: 10.1158/2767-9764.CRC-23-0120

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  152. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome-Wide SNP and Indel Discovery in Abaca (Musa textilis Née) and among Other Musa spp. for Abaca Genetic Resources Management
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  153. Jul 2023
  154. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
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  155. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Resolving the pathogenesis of anaplastic Wilms tumors through spatial mapping of cancer cell evolution
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  156. 52.53.155.43 52.53.155.43
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  157. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the hybrid grapevine Vitis ‘Chambourcin’
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  158. Jun 2023
  159. www.nature.com www.nature.com
    Extracellular vesicle-associated IGF2BP3 tunes Ewing sarcoma cell migration and affects PI3K/Akt pathway in neighboring cells
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      DOI: 10.1038/s41417-023-00637-8

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  160. link.springer.com link.springer.com
    Integrated clinical genomic analysis reveals xenobiotic metabolic genes are downregulated in meningiomas of current smokers
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      DOI: 10.1007/s11060-023-04359-7

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  161. dx.doi.org dx.doi.org
    Characterization of Cell-free DNA Size Distribution in Osteosarcoma Patients
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  162. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
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  163. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Clinical Efficacy and Whole Exome Sequencing of Liquid Biopsies in a Phase IB/II study of Bazedoxifene and Palbociclib in Advanced Hormone Receptor-Positive Breast Cancer
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  164. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Activating an Adaptive Immune Response with a Telomerase-mediated Telomere Targeting Therapeutic in Hepatocellular Carcinoma
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      DOI: 10.1158/1535-7163.MCT-23-0039

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  165. 52.53.155.43 52.53.155.43
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  166. 52.53.155.43 52.53.155.43
    Rare heterozygous loss-of-function variants in the human GLP-1 receptor do not associate with cardiometabolic phenotypes
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  167. May 2023
  168. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evolution of Resistance to Irinotecan in Cancer Cells Involves Generation of Topoisomerase-Guided Mutations in Non-Coding Genome That Reduce the Chances of DNA Breaks
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      DOI: 10.3390/ijms24108717

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  169. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)
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  170. www.biorxiv.org www.biorxiv.org
    Transition from Transient DNA Rereplication to Inherited Gene Amplification Following Prolonged Environmental Stress
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      DOI: 10.1101/2023.05.08.539886

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    biorxiv.org/content/10.1101/2023.05.08.539886v1
  171. www.nature.com www.nature.com
    Network analysis reveals a major role for 14q32 cluster miRNAs in determining transcriptional differences between IGHV-mutated and unmutated CLL
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      DOI: 10.1038/s41375-023-01918-9

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  172. www.nature.com www.nature.com
    Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response
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      DOI: 10.1038/s41467-023-38271-5

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  173. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Mitogenome evidence shows two radiation events and dispersals of matrilineal ancestry from northern coastal China to the Americas and Japan
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      DOI: 10.1016/j.celrep.2023.112413

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  174. Apr 2023
  175. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Genomic profiles of Indonesian colorectal cancer patients
    1
    1. scibot 29 Apr 2023
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      DOI: 10.12688/f1000research.109136.2

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  176. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
    1
    1. scibot 11 Apr 2023
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      DOI: 10.1093/gigascience/giad022

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
  177. academic.oup.com academic.oup.com
    A chromosome-scale high-contiguity genome assembly of the cheetah (Acinonyx jubatus)
    1
    1. scibot 06 Apr 2023
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    academic.oup.com/jhered/advance-article/doi/10.1093/jhered/esad015/7069302
  178. Mar 2023
  179. europepmc.org europepmc.org
    Metagenomic analysis of coastal Kenya female Aedes aegypti mosquito ...
    2
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      DOI: 10.12688/wellcomeopenres.18868.1

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  180. academic.oup.com academic.oup.com
    Resequencing of a Pekin duck breeding population provides insights into the genomic response to short-term artificial selection
    1
    1. scibot 30 Mar 2023
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      DOI: 10.1093/gigascience/giad016

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad016/7086661
  181. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the roundjaw bonefish (Albula glossodonta), a vulnerable circumtropical sportfish
    1
    1. scibot 29 Mar 2023
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      DOI: 10.46471/gigabyte.44

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    ncbi.nlm.nih.gov/pmc/articles/PMC10038134/
  182. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids
    1
    1. scibot 22 Mar 2023
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  183. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the deep-sea coral Lophelia pertusa
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    1. scibot 22 Mar 2023
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    ncbi.nlm.nih.gov/pmc/articles/PMC10022433/
  184. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research
    1
    1. scibot 22 Mar 2023
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    ncbi.nlm.nih.gov/pmc/articles/PMC10027117/
  185. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Phagocytosis of Glioma Cells Enhances the Immunosuppressive Phenotype of Bone Marrow–Derived Macrophages
    1
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  186. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated, Longitudinal Analysis of Cell-free DNA in Uveal Melanoma
    1
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  187. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of a benthic associated Syngnathiformes species: the common dragonet, Callionymus lyra
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9631949/
  188. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new and improved genome sequence of Cannabis sativa
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    1. scibot 02 Mar 2023
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    ncbi.nlm.nih.gov/pmc/articles/PMC9632002/
  189. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
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    1. scibot 02 Mar 2023
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  190. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first Antechinus reference genome provides a resource for investigating the genetic basis of semelparity and age-related neuropathologies
    1
    1. scibot 02 Mar 2023
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  191. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
    1
    1. scibot 02 Mar 2023
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    ncbi.nlm.nih.gov/pmc/articles/PMC9632003/
  192. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9632040/
  193. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the numbat (Myrmecobius fasciatus), the only termitivorous marsupial
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    1. scibot 02 Mar 2023
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      DOI: 10.46471/gigabyte.47

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650251/
  194. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource
    1
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      DOI: 10.46471/gigabyte.40

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650269/
  195. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome assembly and annotation of the maize elite breeding line Dan340
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9694154/
  196. 52.53.155.43 52.53.155.43
    A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus
    1
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    52.53.155.43/c66fa9b2ea7c129831e4f3a5d878c6edc0d7a347/esad003-html.html
  197. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Infection dynamics, transmission, and evolution after an outbreak of porcine reproductive and respiratory syndrome virus
    1
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      DOI: 10.3389/fmicb.2023.1109881

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    ncbi.nlm.nih.gov/pmc/articles/PMC9947509/
  198. Feb 2023
  199. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes
    1
    1. scibot 23 Feb 2023
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      DOI: 10.1093/gigascience/giad005

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    ncbi.nlm.nih.gov/pmc/articles/PMC9941839/
  200. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome assembly of Ostrea denselamellosa provides initial insights into its evolution
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      DOI: 10.1016/j.ygeno.2023.110582

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    sciencedirect.com/science/article/pii/S0888754323000265
  201. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated Genomic Analysis Identifies UBTF Tandem Duplications as a Recurrent Lesion in Pediatric Acute Myeloid Leukemia
    1
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      DOI: 10.1158/2643-3230.BCD-21-0160

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    ncbi.nlm.nih.gov/pmc/articles/PMC9780084/
  202. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds
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    1. scibot 08 Feb 2023
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      DOI: 10.1093/gigascience/giad003

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad003/7025323
  203. academic.oup.com academic.oup.com
    Expanded MutaT7 toolkit efficiently and simultaneously accesses all possible transition mutations in bacteria
    1
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      DOI: 10.1093/nar/gkad003

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    academic.oup.com/nar/advance-article/doi/10.1093/nar/gkad003/7009119
  204. Jan 2023
  205. www.nature.com www.nature.com
    Germline rare deleterious variant load alters cancer risk, age of onset and tumor characteristics
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      DOI: 10.1038/s41698-023-00354-3

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    nature.com/articles/s41698-023-00354-3
  206. www.nature.com www.nature.com
    A chromosome-level genome assembly of Plantago ovata
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      DOI: 10.1038/s41598-022-25078-5

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    nature.com/articles/s41598-022-25078-5
  207. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome Reporting for Healthy Populations—Pipeline for Genomic Screening from the GENCOV COVID‐19 Study
    1
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      DOI: 10.1002/cpz1.534

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  208. www.sciencedirect.com www.sciencedirect.com
    Centromeres as universal hotspots of DNA breakage, driving RAD51-mediated recombination during quiescence
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      DOI: 10.1016/j.molcel.2023.01.004

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  209. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cancer stem cells, not bulk tumor cells, determine mechanisms of resistance to SMO inhibitors
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      DOI: 10.1158/2767-9764.crc-22-0124

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  210. www.biorxiv.org www.biorxiv.org
    A chromosome-scale assembly for tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes
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      DOI: 10.1101/2023.01.10.523438

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    biorxiv.org/content/10.1101/2023.01.10.523438v1
  211. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers
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      DOI: 10.1158/2159-8290.CD-22-0489

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  212. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Circulating Tumor DNA in Stage III Colorectal Cancer, beyond Minimal Residual Disease Detection, toward Assessment of Adjuvant Therapy Efficacy and Clinical Behavior of Recurrences
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  213. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome-level genome assembly of Dastarcus helophoroides provides insights into CYP450 genes expression upon insecticide exposure
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      DOI: 10.1002/ps.7319

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    onlinelibrary.wiley.com/doi/10.1002/ps.7319
  214. Dec 2022
  215. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cultural and demic co-diffusion of Tubo Empire on Tibetan Plateau
    1
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      DOI: 10.1016/j.isci.2022.105636

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  216. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation
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    1. scibot 30 Dec 2022
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      DOI: 10.1093/gigascience/giac112

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  217. www.sciencedirect.com www.sciencedirect.com
    Protocol to analyze population structure and migration history based on human genome variation data
    1
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      DOI: 10.1016/j.xpro.2022.101928

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