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    Human papillomavirus integration induces oncogenic host gene fusions in oropharyngeal cancers
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    Detection and monitoring of translocation renal cell carcinoma via plasma cell-free epigenomic profiling
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    biorxiv.org/content/10.1101/2025.08.31.673338v1
  4. Sep 2025
  5. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Detection of human brain cancers using genomic and immune cell characterization of cerebrospinal fluid through CSF-BAM
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    Efficacy of ATR Kinase Inhibitor Elimusertib Monotherapy or Combination in Tumors with DNA Damage Response Pathway and Other Genomic Alterations
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    A telomere-to-telomere genome assembly of koi carp (Cyprinus carpio) using long reads and Hi-C technology
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    GPSai: A Clinically Validated AI Tool for Tissue of Origin Prediction During Routine Tumor Profiling
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  9. Aug 2025
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    Cyclin-dependent kinase 9 inhibitors as oncogene signaling modulators in combination with targeted therapy for the treatment of colorectal cancer
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    The genomic history of East Asian Middle Neolithic millet- and rice-agricultural populations
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    AI-driven multimodal algorithm predicts immunotherapy and targeted therapy outcomes in clear cell renal cell carcinoma
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    AREG and EREG Are Predictive Biomarkers of Response to EGFR Inhibition in Gastroesophageal Cancer
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    A holistic genome dataset of bacteria and archaea of mangrove sediments
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    Genomic Signatures of Poor Prognosis in Merkel Cell Carcinoma: A Single-Institution Prospective Study
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    Bronze Age Yersinia pestis genome from sheep sheds light on hosts and evolution of a prehistoric plague lineage
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    Functional Role of Small Extrachromosomal Circular DNA in Colorectal Cancer
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    Whole-genome sequencing reveals three follicular lymphoma subtypes with distinct cell of origin and patient outcomes
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    Circulating Extrachromosomal Circular DNA in Epithelial Ovarian Cancer Reflects Chemotherapeutic Response and Recurrence
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    Intrahepatic Microbial Heterogeneity in Multifocal Hepatocellular Carcinoma and Its Association with Host Genomic and Transcriptomic Alterations
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    Epigenetic Heritability of Cell Plasticity Drives Cancer Drug Resistance through a One-to-Many Genotype-to-Phenotype Paradigm
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  22. Jul 2025
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    Ancient genomes from the Yellow River Bend reveal long-distance population interactions between the Central Plains, Steppe, and southern China
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    Clinical Significance of TERT Promoter Mutations in Neuroblastoma
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    Multiomics uncovers the epigenomic and transcriptomic response to viral and bacterial stimulation in turbot
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    Plasma epigenomic profiling reveals treatment-emergent squamous transformation in prostate cancer
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    Requirement for Cyclin D1 Underlies Cell-Autonomous HIF2 Dependence in Kidney Cancer
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    High-Throughput Drug Screening of Clear Cell Ovarian Cancer Organoids Reveals Vulnerability to Proteasome Inhibitors and Dinaciclib and Identifies AGR2 as a Therapeutic Target
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  36. Jun 2025
  37. gigabytejournal.com gigabytejournal.com
    A draft genome assembly for the dart-poison frog Phyllobates terribilis
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    Denisovan mitochondrial DNA from dental calculus of the >146,000-year-old Harbin cranium
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    Chromosome-Level genome assembly and transcriptome analysis of the ural owl, Strix uralensis Pallas, 1771
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    Single-Cell Transcriptomic Landscape Deciphers Intratumoral Heterogeneity and Subtypes of Acral and Mucosal Melanomas
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    Multiomic mapping of acquired chromosome 1 copy number and structural variants to identify therapeutic vulnerabilities in multiple myeloma
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    Chromosome-level reference genome for the medically important Arabian horned viper (Cerastes gasperettii)
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    Chromosome-level genome assembly of Pinus massoniana provides insights into conifer adaptive evolution
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  48. May 2025
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    Immunohistochemical and molecular evolutionary features of jejunoileal adenocarcinoma unveiled through comparative analysis with colorectal adenocarcinoma
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    Auditory neuropathy spectrum disorder and related auditory features in patients with hearing loss associated with the MT-TS1 m.7471dup variant
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    Clear-Cell Renal Cell Carcinoma Molecular Subtypes Differ by African and European Genetic Similarity
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    A near telomere-to-telomere genome assembly of the Jinhua pig: enabling more accurate genetic research
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    The potential of inversions to accumulate balanced sexual antagonism is supported by simulations and Drosophila experiments
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    Prenatal Exposure to Chemotherapy Increases the Mutation Burden in Human Neonatal Hematopoietic Stem Cells
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    Convergent Genetic Adaptation in Human Tumors Developed Under Systemic Hypoxia and in Populations Living at High Altitudes
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    The haplotype-resolved T2T genome for Bauhinia × blakeana sheds light on the genetic basis of flower heterosis
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    A tumour necrosis factor-α responsive cryptic promoter drives overexpression of the human endogenous retrovirus ERVK-7
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  62. Apr 2025
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    PLK1 Inhibition Induces Synthetic Lethality in Fanconi Anemia Pathway–Deficient Acute Myeloid Leukemia
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    Germline Pathogenic DROSHA Variants Are Linked to Pineoblastoma and Wilms Tumor Predisposition
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    A Genomics-Driven Artificial Intelligence-Based Model Classifies Breast Invasive Lobular Carcinoma and Discovers CDH1 Inactivating Mechanisms
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    Phased high-quality genome of the gymnosperm Himalayan Yew assists in paclitaxel pathway exploration
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    The molecular basis of octocoral calcification revealed by genome and skeletal proteome analyses
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    Spatially Resolved Tumor Ecosystems and Cell States in Gastric Adenocarcinoma Progression and Evolution
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    Genomic Profiling to Contextualize the Results of Intervention for Smoldering Multiple Myeloma
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  72. Mar 2025
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    Characteristics and filtering of low-frequency artificial short deletion variations based on nanopore sequencing
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    The assembly and annotation of two teinturier grapevine varieties, Dakapo and Rubired
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    Evolution of KoRV-A transcriptional silencing in wild koalas
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    Draft genome of the endangered visayan spotted deer (Rusa alfredi), a Philippine endemic species
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    Multiomics analysis provides insights into musk secretion in muskrat and musk deer
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    Benchmarking short-read metagenomics tools for removing host contamination
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  82. Feb 2025
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    Fusion oncoproteins and cooperating mutations define disease phenotypes in NUP98-rearranged leukemia
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    The telomere-to-telomere genome of flowering cherry (Prunus campanulata) reveals genomic evolution of the subgenus Cerasus
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    Multiomic QTL mapping reveals phenotypic complexity of GWAS loci and prioritizes putative causal variants
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    Microevolution of Cryptococcus neoformans in high CO2 converges on mutations isolated from patients with relapsed cryptococcosis
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    mTOR-mediated p62/SQSTM1 stabilization confers a robust survival mechanism for ovarian cancer
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    Enhancing inbreeding estimation and global conservation insights through chromosome-level assemblies of the Chinese and Malayan pangolin
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    Individualized patient tumor organoids faithfully preserve human brain tumor ecosystems and predict patient response to therapy
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  91. jasbsci.biomedcentral.com jasbsci.biomedcentral.com
    Advancing the Indian cattle pangenome: characterizing non-reference sequences in Bos indicus
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    Dynamic history of the Central Plain and Haidai region inferred from Late Neolithic to Iron Age ancient human genomes
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  93. Jan 2025
  94. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Genomes reveal pervasive distant hybridization in nature among cyprinid fishes
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  179. Apr 2024
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  185. Mar 2024
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  187. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  188. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  189. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Establishment and characterization of an Epstein-Barr virus-positive cell line from a non-keratinizing differentiated primary nasopharyngeal carcinoma
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  190. www.sciencedirect.com www.sciencedirect.com
    Follicular lymphoma B cells exhibit heterogeneous transcriptional states with associated somatic alterations and tumor microenvironments
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  191. Feb 2024
  192. aacrjournals.org aacrjournals.org
    Early Cancer Detection in Li-Fraumeni Syndrome with Cell-Free DNA
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  193. 52.53.155.43 52.53.155.43
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  194. www.biorxiv.org www.biorxiv.org
    Chemical mutagenesis of Listeria monocytogenes for increased tolerance to benzalkonium chloride shows independent genetic underpinnings and off-target antibiotic resistance
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  195. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  196. Jan 2024
  197. www.sciencedirect.com www.sciencedirect.com
    Genetic variants affecting NQO1 protein levels impact the efficacy of idebenone treatment in Leber hereditary optic neuropathy
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  198. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)
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    A new genomic framework to categorize pediatric acute myeloid leukemia
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  201. www.sciencedirect.com www.sciencedirect.com
    Recruitment of trimeric eIF2 by phosphatase non-catalytic subunit PPP1R15B
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  202. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multi-omics integration identifies cell-state-specific repression by PBRM1-PIAS1 cooperation
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  203. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Leveraging tissue-specific enhancer-target gene regulatory networks identifies enhancer somatic mutations that functionally impact lung cancer
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  204. Dec 2023
  205. www.sciencedirect.com www.sciencedirect.com
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  207. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mutational impact of APOBEC3A and APOBEC3B in a human cell line and comparisons to breast cancer
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  208. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Blimp-1 and c-Maf regulate  Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
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  209. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  212. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  213. Nov 2023
  214. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference assembly for the legume cover crop hairy vetch (Vicia villosa)
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  215. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Concurrent targeting of HDAC and PI3K to overcome phenotypic heterogeneity of castration-resistant and neuroendocrine prostate cancers
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  216. www.nature.com www.nature.com
    Preclinical evidence for the effective use of TL-895, a highly selective and potent second-generation BTK inhibitor, for the treatment of B-cell malignancies
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  217. www.science.org www.science.org
    Interindividual variation in human cortical cell type abundance and expression
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  218. dx.doi.org dx.doi.org
    Population-specific Mutation Patterns in Breast Tumors from African American, European American, and Kenyan Patients
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