377 Matching Annotations
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  2. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A genome-wide nucleosome-resolution map of promoter-centered interactions in human cells corroborates the enhancer-promoter looping model
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    1. scibot 22 Dec 2024
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      DOI: 10.7554/eLife.91596

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    pmc.ncbi.nlm.nih.gov/articles/PMC11651654/
  3. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The chromosome-level genome assembly of an endangered herb Bergenia scopulosa provides insights into local adaptation and genomic vulnerability under climate change
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    1. scibot 21 Dec 2024
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      DOI: 10.1093/gigascience/giae091

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  4. Dec 2024
  5. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    H4K20me3-Mediated Repression of Inflammatory Genes is a Characteristic and Targetable Vulnerability of Persister Cancer Cells
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    1. scibot 13 Dec 2024
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    pmc.ncbi.nlm.nih.gov/articles/PMC7617193/
  6. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome provides insights into the evolution of specialized centromere sequences in sandalwood
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    1. scibot 13 Dec 2024
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    pmc.ncbi.nlm.nih.gov/articles/PMC11633456/
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    Functional annotation of regulatory elements in rainbow trout uncovers roles of the epigenome in genetic selection and genome evolution
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    1. scibot 13 Dec 2024
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      DOI: 10.1093/gigascience/giae092

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  8. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Epigenetic and Oncogenic Inhibitors Cooperatively Drive Differentiation and Kill KRAS-Mutant Colorectal Cancers
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    1. scibot 11 Dec 2024
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    Single chromatin fiber profiling and nucleosome position mapping in the human brain
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    1. scibot 06 Dec 2024
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    sciencedirect.com/science/article/pii/S2667237524003011
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    DNA hypomethylation promotes UHRF1-and SUV39H1/H2-dependent crosstalk between H3K18ub and H3K9me3 to reinforce heterochromatin states
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    1. scibot 05 Dec 2024
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    sciencedirect.com/science/article/pii/S1097276524009146
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    The phosphatase PP1 sustains global transcription by promoting RNA polymerase II pause release
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    1. scibot 02 Dec 2024
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    sciencedirect.com/science/article/pii/S1097276524008852
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    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
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    1. scibot 02 Dec 2024
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      DOI: 10.1016/j.cell.2024.10.049

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    sciencedirect.com/science/article/pii/S0092867424012728
  13. Nov 2024
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    Harnessing biosynthesized selenium nanoparticles for recruitment of beneficial soil microbes to plant roots
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    1. scibot 24 Nov 2024
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    sciencedirect.com/science/article/pii/S1931312824004013
  15. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    ISWI chromatin remodeling complexes recruit NSD2 and H3K36me2 in pericentromeric heterochromatin
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    1. scibot 08 Nov 2024
      RRID:SCR_016368

      DOI: 10.1083/jcb.202310084

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  16. www.mdpi.com www.mdpi.com
    New Small-Molecule SERCA Inhibitors Enhance Treatment Efficacy in Lenvatinib-Resistant Papillary Thyroid Cancer
    1
    1. scibot 07 Nov 2024
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      DOI: 10.3390/ijms251910646

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  17. 52.53.155.43 52.53.155.43
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    1. scibot 07 Nov 2024
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      DOI: 10.1158/0008-5472.can-24-0529

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  18. Oct 2024
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    HOXDeRNA activates a cancerous transcription program and super enhancers via genome-wide binding
    1
    1. scibot 09 Oct 2024
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  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    RiboSnake – a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis
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    1. scibot 06 Oct 2024
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      DOI: 10.46471/gigabyte.132

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    ncbi.nlm.nih.gov/pmc/articles/PMC11448241/
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation
    1
    1. scibot 02 Oct 2024
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      DOI: 10.1093/gigascience/giae065

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    ncbi.nlm.nih.gov/pmc/articles/PMC11440432/
  22. aacrjournals.org aacrjournals.org
    Monocytic Differentiation and AHR Signaling as Primary Nodes of BET Inhibitor Response in Acute Myeloid Leukemia
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    1. scibot 02 Oct 2024
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      DOI: 10.1158/2643-3230.BCD-21-0012

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    aacrjournals.org/bloodcancerdiscov/article/2/5/518/665838/Monocytic-Differentiation-and-AHR-Signaling-as
  23. Sep 2024
  24. www.sciencedirect.com www.sciencedirect.com
    Tracing early pastoralism in Central Europe using sedimentary ancient DNA
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    1. scibot 26 Sep 2024
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      DOI: 10.1016/j.cub.2024.08.047

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    sciencedirect.com/science/article/pii/S096098222401162X
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Divergent iron regulatory states contribute to heterogeneity in breast cancer aggressiveness
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    1. scibot 26 Sep 2024
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    ncbi.nlm.nih.gov/pmc/articles/PMC11387597/
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    Multiple direct and indirect roles of the Paf1 complex in transcription elongation, splicing, and histone modifications
    1
    1. scibot 10 Sep 2024
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      DOI: 10.1016/j.celrep.2024.114730

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    sciencedirect.com/science/article/pii/S2211124724010817
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    Targeting EGLN2/PHD1 protects motor neurons and normalizes the astrocytic interferon response
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    1. scibot 10 Sep 2024
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      DOI: 10.1016/j.celrep.2024.114719

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    sciencedirect.com/science/article/pii/S2211124724010702
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    Streamlined regulation of chloroplast development in the liverwort Marchantia polymorpha
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      DOI: 10.1016/j.celrep.2024.114696

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    sciencedirect.com/science/article/pii/S2211124724010477
  29. Aug 2024
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characterizing Relationships between T-cell Inflammation and Outcomes in Patients with High-Risk Neuroblastoma According to Mesenchymal and Adrenergic Signatures
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    1. scibot 30 Aug 2024
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      DOI: 10.1158/2767-9764.CRC-24-0214

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    ncbi.nlm.nih.gov/pmc/articles/PMC11350481/
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    Acral fibrochondromyxoid tumor: a clinicopathologic and molecular genetic study of 37 cases
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      DOI: 10.1016/j.modpat.2024.100599

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    sciencedirect.com/science/article/pii/S0893395224001790
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    CRISPR screening uncovers a long-range enhancer for ONECUT1 in pancreatic differentiation and links a diabetes risk variant
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    Members of an array of zinc-finger proteins specify distinct Hox chromatin boundaries
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    1. scibot 23 Aug 2024
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      DOI: 10.1016/j.molcel.2024.08.007

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  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    HLTF resolves G4s and promotes G4-induced replication fork slowing to maintain genome stability
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  35. www.biorxiv.org www.biorxiv.org
    The multi-level effect of chlorpyrifos during clownfish metamorphosis
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      DOI: 10.1101/2024.08.02.606305

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    biorxiv.org/content/10.1101/2024.08.02.606305v1
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MOBFinder: a tool for mobilization typing of plasmid metagenomic fragments based on a language model
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      DOI: 10.1093/gigascience/giae047

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    A replisome-associated histone H3-H4 chaperone required for epigenetic inheritance
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      DOI: 10.1016/j.cell.2024.07.006

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  38. www.ncbi.nlm.nih.govhttp www.ncbi.nlm.nih.govhttp
    Heteromeric RNP Assembly at LINEs Controls Lineage-Specific RNA Processing
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    ncbi.nlm.nih.govhttp//europepmc.org/articles/PMC6108849/
  39. Jul 2024
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ZNF397 Deficiency Triggers TET2-Driven Lineage Plasticity and AR-Targeted Therapy Resistance in Prostate Cancer
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    ncbi.nlm.nih.gov/pmc/articles/PMC11285331/
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Epigenetic Induction of Cancer-Testis Antigens and Endogenous Retroviruses at Single-Cell Level Enhances Immune Recognition and Response in Glioma
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      DOI: 10.1158/2767-9764.CRC-23-0566

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    ncbi.nlm.nih.gov/pmc/articles/PMC11275559/
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    Pandemic-associated pernio harbors footprints of an abortive SARS-CoV-2 infection
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      DOI: 10.1016/j.isci.2024.110525

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  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A clinical metagenomic study of biopsies from Mexican endophthalmitis patients reveals the presence of complex bacterial communities and a diversity of resistance genes
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      DOI: 10.1099/acmi.0.000639.v3

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    ncbi.nlm.nih.gov/pmc/articles/PMC11261729/
  44. www.cell.com www.cell.com
    Innate immune training restores pro-reparative myeloid functions to promote remyelination in the aged central nervous system
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      DOI: 10.1016/j.immuni.2024.07.001

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    cell.com/immunity/fulltext/S1074-7613(24)00348-0
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    MYB-related transcription factors control chloroplast biogenesis
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      DOI: 10.1016/j.cell.2024.06.039

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  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A ghost moth olfactory prototype of the lepidopteran sex communication
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    1. scibot 23 Jul 2024
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      DOI: 10.1093/gigascience/giae044

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    ncbi.nlm.nih.gov/pmc/articles/PMC11258902/
  47. www.science.org www.science.org
    The annotation of GBA1 has been concealed by its protein-coding pseudogene GBAP1
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      DOI: 10.1126/sciadv.adk1296

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    science.org/doi/10.1126/sciadv.adk1296
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    Netrin signaling mediates survival of dormant epithelial ovarian cancer cells
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    T-bet deficiency and Hic1 induction override TGF-β-dependency in the formation of CD103+ intestine-resident memory CD8+ T cells
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    Loss of succinyl-CoA synthetase in mouse forebrain results in hypersuccinylation with perturbed neuronal transcription and metabolism
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    Three-dimensional genome architecture coordinates key regulators of lineage specification in mammary epithelial cells
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  138. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Oncogenic context shapes the fitness landscape of tumor suppression
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  139. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    nf-core/clipseq - a robust Nextflow pipeline for comprehensive CLIP data analysis
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  140. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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  141. dx.doi.org dx.doi.org
    Chromatin accessibility landscape of human triple-negative breast cancer cell lines reveals variation by patient donor ancestry
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  142. www.nature.com www.nature.com
    TET2 lesions enhance the aggressiveness of CEBPA-mutant acute myeloid leukemia by rebalancing GATA2 expression
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  143. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Acquisition of Neural Fate by Combination of BMP Blockade and Chromatin Modification
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  144. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level reference genome of tetraploid Isoetes sinensis provides insights into evolution and adaption of lycophytes
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  145. Sep 2023
  146. 52.53.155.43 52.53.155.43
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  147. dx.doi.org dx.doi.org
    Targeting KDM2A Enhances T Cell Infiltration in NSD1-Deficient Head and Neck Squamous Cell Carcinoma
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  148. Aug 2023
  149. www.biorxiv.org www.biorxiv.org
    Variant-to-function analysis of the childhood obesity chr12q13 locus implicates rs7132908 as a causal variant within the 3’ UTR of FAIM2
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  150. 52.53.155.43 52.53.155.43
    Aberrant accumulation of Kras-dependent pervasive transcripts during tumor progression renders cancer cells dependent on PAF1 expression
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  151. 52.53.155.43 52.53.155.43
    SnakeMAGs: a simple, efficient, flexible and scalable workflow to reconstruct prokaryotic genomes from metagenomes
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  152. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Proteasome Inhibition Sensitizes Liposarcoma to MDM2 Inhibition with Nutlin-3 by Activating the ATF4/CHOP Stress Response Pathway
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  153. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Deficiency of the Polycomb protein RYBP and TET methylcytosine oxidases promotes extensive CpG island hypermethylation and malignant transformation
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  154. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Longitudinal map of transcriptome changes in the Lyme pathogen Borrelia burgdorferi during tick-borne transmission
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  155. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Histone variants shape chromatin states in Arabidopsis
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  156. Jul 2023
  157. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pharmacological HDAC inhibition impairs pancreatic β-cell function through an epigenome-wide reprogramming
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  158. www.sciencedirect.com www.sciencedirect.com
    Parallel CRISPR-Cas9 screens identify mechanisms of PLIN2 and lipid droplet regulation
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    Evolutionary history of Staphylococcus aureus influences antibiotic resistance evolution
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    Bacterial clade-specific analysis identifies distinct epithelial responses in inflammatory bowel disease
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  161. 52.53.155.43 52.53.155.43
    A clinical metagenomic study of biopsies from Mexican endophthalmitis patients reveals the presence of complex bacterial communities and a diversity of resistance genes
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      DOI: 10.1099/acmi.0.000639.v1

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  162. www.sciencedirect.com www.sciencedirect.com
    Co-targeting RANK pathway treats and prevents acquired resistance to CDK4/6 inhibitors in luminal breast cancer
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  163. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An initial genomic blueprint of the healthy human oesophageal microbiome
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  164. 52.53.155.43 52.53.155.43
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  166. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the hybrid grapevine Vitis ‘Chambourcin’
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  167. Jun 2023
  168. 52.53.155.43 52.53.155.43
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  170. www.embopress.org www.embopress.org
    DOT1L bridges transcription and heterochromatin formation at mammalian pericentromeres
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  171. 52.53.155.43 52.53.155.43
    Modelling host-Trypanosoma brucei gambiense interactions in vitro using human induced pluripotent stem cell-derived cortical brain organoids
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  172. aacrjournals.org aacrjournals.org
    (R)-2-hydroxyglutarate inhibits KDM5 histone lysine demethylases to drive transformation in IDH-mutant cancers
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  173. May 2023
  174. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative analysis of microRNA expression profiles in shoot and root tissues of contrasting rice cultivars (Oryza sativa L.) with different salt stress tolerance
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  175. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Developmental dynamics of chromatin accessibility during post-implantation development of monkey embryos
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  176. 52.53.155.43 52.53.155.43
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      DOI: 10.1210/endocr/bqad083

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  177. www.sciencedirect.com www.sciencedirect.com
    Bat ASC2 suppresses inflammasomes and ameliorates inflammatory diseases
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  178. onlinelibrary.wiley.com onlinelibrary.wiley.com
    KMT2D Deficiency Promotes Myeloid Leukemias which Is Vulnerable to Ribosome Biogenesis Inhibition
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      DOI: 10.1002/advs.202206098

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  179. www.biorxiv.org www.biorxiv.org
    L1 retrotransposons drive human neuronal transcriptome complexity and functional diversification
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  180. Apr 2023
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    A hyper-quiescent chromatin state formed during aging is reversed by regeneration
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    Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population
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    Comprehensive epigenomic profiling reveals the extent of disease-specific chromatin states and informs target discovery in ankylosing spondylitis
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    Novel enhancers conferring compensatory transcriptional regulation of Nkx2-5 in heart development
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    INTAC endonuclease and phosphatase modules differentially regulate transcription by RNA polymerase II
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    Complementary gene regulation by NRF1 and NRF2 protects against hepatic cholesterol overload
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    Asparagine starvation suppresses histone demethylation through iron depletion
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    Histone phosphorylation integrates the hepatic glucagon-PKA-CREB gluconeogenesis program in response to fasting
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  189. Mar 2023
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    Atria: an ultra-fast and accurate trimmer for adapter and quality trimming
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    Genome assembly of the roundjaw bonefish (Albula glossodonta), a vulnerable circumtropical sportfish
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    Stepwise activities of mSWI/SNF family chromatin remodeling complexes direct T cell activation and exhaustion
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    SnakeMAGs: a simple, efficient, flexible and scalable workflow to reconstruct prokaryotic genomes from metagenomes
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    MeCP2 regulates Gdf11, a dosage-sensitive gene critical for neurological function
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    Hippo pathway and Bonus control developmental cell fate decisions in the Drosophila eye
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    A chromosome-scale draft genome sequence of horsegram (Macrotyloma uniflorum)
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    Genome assembly of the numbat (Myrmecobius fasciatus), the only termitivorous marsupial
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  198. Feb 2023
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    Human hematopoietic stem cell vulnerability to ferroptosis
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    The BRD4 inhibitor JQ1 augments the antitumor efficacy of abemaciclib in preclinical models of gastric carcinoma
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    DDR2 coordinates EMT and metabolic reprogramming as a shared effector of FOXQ1 and SNAI1
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  202. Jan 2023
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    Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype
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    Genomic view of the diversity and functional role of archaea and bacteria in the skeleton of the reef-building corals Porites lutea and Isopora palifera
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    Cancer stem cells, not bulk tumor cells, determine mechanisms of resistance to SMO inhibitors
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    A chromosome-scale assembly for tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes
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    Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers
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    Resistance to white spot syndrome virus in the European shore crab is associated with suppressed virion trafficking and heightened immune responses
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    SMN promotes mitochondrial metabolic maturation during myogenesis by regulating the MYOD-miRNA axis
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    PRC2 Inactivating Mutations in Cancer Enhance Cytotoxic Response to DNMT1 Targeted Therapy via Enhanced Viral Mimicry
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    Targeting metabolic adaptations in the breast cancer–liver metastatic niche using dietary approaches to improve endocrine therapy efficacy
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    BAF complex maintains glioma stem cells in pediatric H3K27M-glioma
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  214. Nov 2022
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    Tip60-mediated H2A.Z acetylation promotes neuronal fate specification and bivalent gene activation
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    Transcriptomic Correlates of Tumor Cell PD-L1 Expression and Response to Nivolumab Monotherapy in Metastatic Clear Cell Renal Cell Carcinoma
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    Essential role of MESP1-RING1A complex in cardiac differentiation
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    DDR2 Coordinates EMT and Metabolic Reprogramming as a Shared Effector of FOXQ1 and SNAI1
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    High-quality genome assembles from key Hawaiian coral species
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      DOI: 10.1093/gigascience/giac098

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