452 Matching Annotations
  1. Aug 2021
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.1093/gigascience/giy139

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    ncbi.nlm.nih.gov/pmc/articles/PMC6290886/
  3. www.sciencedirect.com www.sciencedirect.com
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    sciencedirect.com/science/article/pii/S0960982218315549
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1. scibot 01 Aug 2021
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      DOI: 10.7554/eLife.37750

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    ncbi.nlm.nih.gov/pmc/articles/PMC6095691/
  5. www.sciencedirect.com www.sciencedirect.com
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    1. scibot 01 Aug 2021
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      DOI: 10.1016/j.immuni.2018.10.012

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    sciencedirect.com/science/article/pii/S1074761318304771
  6. Jul 2021
  7. www.nature.com www.nature.com
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    1. scibot 31 Jul 2021
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      DOI: 10.1038/s41586-018-0845-0

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    nature.com/articles/s41586-018-0845-0 
  8. elifesciences.org elifesciences.org
    A scalable platform for the development of cell-type-specific viral drivers
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    1. scibot 30 Jul 2021
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      DOI: 10.7554/eLife.48089

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    elifesciences.org/articles/48089
  9. www.nature.com www.nature.com
    α-Ketoglutarate links p53 to cell fate during tumour suppression
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    1. scibot 30 Jul 2021
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      DOI: 10.1038/s41586-019-1577-5

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    nature.com/articles/s41586-019-1577-5
  10. link.springer.com link.springer.com
    Cold-induced lipid dynamics and transcriptional programs in white adipose tissue
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    1. scibot 30 Jul 2021
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      DOI: 10.1186/s12915-019-0693-x

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    link.springer.com/article/10.1186/s12915-019-0693-x
  11. academic.oup.com academic.oup.com
    HUMAN TROPHOBLAST DIFFERENTIATION IS ASSOCIATED WITH PROFOUND GENE REGULATORY AND EPIGENETIC CHANGES
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    1. scibot 30 Jul 2021
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      DOI: 10.1210/en.2019-00144

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    academic.oup.com/endo/article-abstract/160/9/2189/5530214
  12. elifesciences.org elifesciences.org
    Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation
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    1. scibot 30 Jul 2021
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      DOI: 10.7554/eLife.19760

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    elifesciences.org/articles/19760
  13. www.sciencedirect.com www.sciencedirect.com
    Targeting CDK9 Reactivates Epigenetically Silenced Genes in Cancer
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    1. scibot 30 Jul 2021
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    sciencedirect.com/science/article/pii/S0092867418312637
  14. elifesciences.org elifesciences.org
    RbFox1 up-regulation impairs BDNF-dependent hippocampal LTP by dysregulating TrkB isoform expression levels
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    1. scibot 29 Jul 2021
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  15. www.embopress.org www.embopress.org
    A genome‐wide screen identifies IRF2 as a key regulator of caspase‐4 in human cells
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    1. scibot 29 Jul 2021
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      DOI: 10.15252/embr.201948235

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  16. elifesciences.org elifesciences.org
    Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells
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    1. scibot 29 Jul 2021
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  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1. scibot 29 Jul 2021
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      DOI: 10.1093/gigascience/gix115

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    ncbi.nlm.nih.gov/pmc/articles/PMC5751039/
  18. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Subregional differences in astrocytes underlie selective neurodegeneration or protection in Parkinson's disease models in culture
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      DOI: 10.1002/glia.23627

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    onlinelibrary.wiley.com/doi/full/10.1002/glia.23627
  19. elifesciences.org elifesciences.org
    Transitions in cell potency during early mouse development are driven by Notch
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    1. scibot 28 Jul 2021
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      DOI: 10.7554/eLife.42930

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    elifesciences.org/articles/42930
  20. www.sciencedirect.com www.sciencedirect.com
    PI3K Inhibition Activates SGK1 via a Feedback Loop to Promote Chromatin-Based Regulation of ER-Dependent Gene Expression
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    1. scibot 28 Jul 2021
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    sciencedirect.com/science/article/pii/S2211124719302979
  21. www.sciencedirect.com www.sciencedirect.com
    RNA Polymerase II CTD Tyrosine 1 Is Required for Efficient Termination by the Nrd1-Nab3-Sen1 Pathway
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    1. scibot 28 Jul 2021
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    sciencedirect.com/science/article/pii/S1097276518310323
  22. jneuroinflammation.biomedcentral.com jneuroinflammation.biomedcentral.com
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      DOI: 10.1186/s12974-018-1240-3

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    jneuroinflammation.biomedcentral.com/articles/10.1186/s12974-018-1240-3
  23. elifesciences.org elifesciences.org
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    1. scibot 28 Jul 2021
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      DOI: 10.7554/eLife.20375

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    elifesciences.org/articles/20375
  24. www.sciencedirect.com www.sciencedirect.com
    The Exon Junction Complex Undergoes a Compositional Switch that Alters mRNP Structure and Nonsense-Mediated mRNA Decay Activity
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    sciencedirect.com/science/article/pii/S2211124718318096
  25. www.sciencedirect.com www.sciencedirect.com
    foxF-1 Controls Specification of Non-body Wall Muscle and Phagocytic Cells in Planarians
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    1. scibot 27 Jul 2021
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    sciencedirect.com/science/article/pii/S0960982218313599
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    Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency
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    1. scibot 27 Jul 2021
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    sciencedirect.com/science/article/pii/S2405471218303892
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    Deregulated Expression of Mammalian lncRNA through Loss of SPT6 Induces R-Loop Formation, Replication Stress, and Cellular Senescence
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    1. scibot 27 Jul 2021
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    sciencedirect.com/science/article/pii/S1097276518308438
  28. www.sciencedirect.com www.sciencedirect.com
    Acetylation of Cytidine in mRNA Promotes Translation Efficiency
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    sciencedirect.com/science/article/pii/S0092867418313837
  29. www.sciencedirect.com www.sciencedirect.com
    Spatiotemporal m(i)RNA Architecture and 3′ UTR Regulation in the C. elegans Germline
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    sciencedirect.com/science/article/pii/S1534580718308268
  30. www.sciencedirect.com www.sciencedirect.com
    Exon Junction Complex Shapes the Transcriptome by Repressing Recursive Splicing
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    sciencedirect.com/science/article/pii/S1097276518308323
  31. www.sciencedirect.com www.sciencedirect.com
    N6-methyladenine DNA Modification in Glioblastoma
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    1. scibot 27 Jul 2021
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    sciencedirect.com/science/article/pii/S009286741831314X
  32. www.sciencedirect.com www.sciencedirect.com
    RNA Binding to CBP Stimulates Histone Acetylation and Transcription
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    1. scibot 27 Jul 2021
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    sciencedirect.com/science/article/pii/S0092867416317366
  33. f1000research.com f1000research.com
    F1000Research Article: PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals.
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      DOI: 10.12688/f1000research.53926.1

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    f1000research.com/articles/10-570
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell transcriptomic heterogeneity in invasive ductal and lobular breast cancer cells
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      DOI: 10.1158/0008-5472.CAN-20-0696

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      DOI: 10.1158/0008-5472.CAN-20-0696

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    ncbi.nlm.nih.gov/pmc/articles/PMC7856056/
  35. journals.sagepub.com journals.sagepub.com
    Phenotypic Screening Following Transcriptomic Deconvolution to Identify Transcription Factors Mediating Axon Growth Induced by a Kinase Inhibitor - Jeffrey A. Lowell, Nicholas O’Neill, Matt C. Danzi, Hassan Al-Ali, John L. Bixby, Vance P. Lemmon, 2021
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    1. scibot 11 Jul 2021
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      DOI: 10.1177/24725552211026270

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    2. scibot 09 Jul 2021
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      DOI: 10.1177/24725552211026270

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    3. scibot 08 Jul 2021
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      DOI: 10.1177/24725552211026270

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  36. www.sciencedirect.com www.sciencedirect.com
    Targeted protein degradation reveals a direct role of SPT6 in RNAPII elongation and termination
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      DOI: 10.1016/j.molcel.2021.06.016

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    sciencedirect.com/science/article/pii/S1097276521004962
  37. Jun 2021
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    StoatyDive: Evaluation and classification of peak profiles for sequencing data
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      DOI: 10.1093/gigascience/giab045

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    ncbi.nlm.nih.gov/pmc/articles/PMC8212874/
  39. www.sciencedirect.com www.sciencedirect.com
    Protocol for using heterologous spike-ins to normalize for technical variation in chromatin immunoprecipitation
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      DOI: 10.1016/j.xpro.2021.100609

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    sciencedirect.com/science/article/pii/S2666166721003166
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    Enhanced C/EBP binding to G·T mismatches facilitates fixation of CpG mutations in cancer and adult stem cells
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      DOI: 10.1016/j.celrep.2021.109221

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    sciencedirect.com/science/article/pii/S2211124721005726
  41. May 2021
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ZC3H4 restricts non-coding transcription in human cells
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      DOI: 10.7554/eLife.67305

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    ncbi.nlm.nih.gov/pmc/articles/PMC8137146/
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparison of Global DNA Methylation Patterns in Human Melanoma Tissues and Their Derivative Cell Lines
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    1. scibot 19 May 2021
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      DOI: 10.3390/cancers13092123

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    ncbi.nlm.nih.gov/pmc/articles/PMC8124222/
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    Non-canonical Targets of HIF1a Impair Oligodendrocyte Progenitor Cell Function
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      DOI: 10.1016/j.stem.2020.09.019

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    sciencedirect.com/science/article/pii/S193459092030494X
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    Adult Neural Stem Cells Are Alerted by Systemic Inflammation through TNF-α Receptor Signaling
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      DOI: 10.1016/j.stem.2020.10.016

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    An intrinsically disordered region-mediated confinement state contributes to the dynamics and function of transcription factors
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    Repetitive Elements Trigger RIG-I-like Receptor Signaling that Regulates the Emergence of Hematopoietic Stem and Progenitor Cells
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    A Prion-like Domain in Transcription Factor EBF1 Promotes Phase Separation and Enables B Cell Programming of Progenitor Chromatin
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    How to characterize a strain? Clonal heterogeneity in industrial Saccharomyces influences both phenotypes and heterogeneity in phenotypes
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    Chromatin Accessibility Dynamics and a Hierarchical Transcriptional Regulatory Network Structure for Plant Somatic Embryogenesis
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  51. Apr 2021
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    Recording of DNA-binding events reveals the importance of a repurposed Candida albicans regulatory network for gut commensalism
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    5-hydroxymethylcytosine is dynamically regulated during forebrain organoid development and aberrantly altered in Alzheimer’s disease
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    Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells
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    Cellular mRNA triggers structural transformation of Ebola virus matrix protein VP40 to its essential regulatory form
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    Impact of chromatin context on Cas9-induced DNA double-strand break repair pathway balance
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    The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr
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    Transcriptional profiling reveals potential involvement of microvillous TRPM5-expressing cells in viral infection of the olfactory epithelium
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  59. Mar 2021
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    KDM6B-dependent chromatin remodeling underpins effective virus-specific CD8+ T cell differentiation
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    Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia
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  62. Feb 2021
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    Beta-catenin signaling regulates barrier-specific gene expression in circumventricular organ and ocular vasculatures
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    An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum
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    Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing
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    Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?
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    Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development
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    The glucocorticoid receptor recruits the COMPASS complex to regulate inflammatory transcription at macrophage enhancers
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  70. Jan 2021
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    Protocol for assaying chromatin accessibility using ATAC-seq in plants
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    Re-expression of SMARCA4/BRG1 in small cell carcinoma of ovary, hypercalcemic type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanism
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    Manipulation of the human tRNA pool reveals distinct tRNA sets that act in cellular proliferation or cell cycle arrest
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  74. Dec 2020
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    High-quality chromosome-level genome assembly and full-length transcriptome analysis of the pharaoh ant Monomorium pharaonis
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    Long-read assembly of the Brassica napus reference genome Darmor-bzh
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    Prolonged Exposure to Microgravity Reduces Cardiac Contractility and Initiates Remodeling in Drosophila
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  78. Nov 2020
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    Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss
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  80. Oct 2020
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    Host-induced spermidine production in motile Pseudomonas aeruginosa triggers phagocytic uptake
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  82. Sep 2020
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    Binding of the Treslin-MTBP Complex to Specific Regions of the Human Genome Promotes the Initiation of DNA Replication
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    Recruitment of mRNAs to P granules by condensation with intrinsically-disordered proteins
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    Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression
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    Global genome diversity of the Leishmania donovani complex
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    PRL3-DDX21 Transcriptional Control of Endolysosomal Genes Restricts Melanocyte Stem Cell Differentiation
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    ZCWPW1 is recruited to recombination hotspots by PRDM9 and is essential for meiotic double strand break repair
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    Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C
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    Lactate production by Staphylococcus aureus biofilm inhibits HDAC11 to reprogramme the host immune response during persistent infection
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    Regulatory Dynamics of Tet1 and Oct4 Resolve Stages of Global DNA Demethylation and Transcriptomic Changes in Reprogramming
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    NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency
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    Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding
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    Heterochromatin-Driven Nuclear Softening Protects the Genome against Mechanical Stress-Induced Damage
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    Parvovirus Minute Virus of Mice Interacts with Sites of Cellular DNA Damage to Establish and Amplify its Lytic Infection
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    Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18
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    RAG-Mediated DNA Breaks Attenuate PU.1 Activity in Early B Cells through Activation of a SPIC-BCLAF1 Complex
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    Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop
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    The transcription factor odd-paired regulates temporal identity in transit-amplifying neural progenitors via an incoherent feed-forward loop
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    The piRNA Response to Retroviral Invasion of the Koala Genome
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    Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling
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    Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation
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    Chromatin Environment and Cellular Context Specify Compensatory Activity of Paralogous MEF2 Transcription Factors
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    SMUG1 Promotes Telomere Maintenance through Telomerase RNA Processing
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    MicroRNAs Cause Accelerated Decay of Short-Tailed Target mRNAs
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    Atlas of Subcellular RNA Localization Revealed by APEX-Seq
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    Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks
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    Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF
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    Combinatorial action of NF–Y and TALE at embryonic enhancers defines distinct gene expression programs during zygotic genome activation in zebrafish
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    Yeast Sirtuin Family Members Maintain Transcription Homeostasis to Ensure Genome Stability
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    The Dynamics of Cytoplasmic mRNA Metabolism
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    The Ovulatory Signal Precipitates LRH-1 Transcriptional Switching Mediated by Differential Chromatin Accessibility
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      DOI: 10.1016/j.celrep.2019.07.088

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    Dynamic transcriptome profiling dataset of vaccinia virus obtained from long-read sequencing techniques
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    Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques
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    Evolution of Mechanisms that Control Mating in Drosophila Males
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      DOI: 10.1016/j.celrep.2019.04.104

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  145. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Global epigenetic analysis of BDNF Val66Met mice hippocampus reveals changes in dendrite and spine remodeling genes
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      DOI: 10.1002/hipo.22991

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    Zc3h13 Regulates Nuclear RNA m6A Methylation and Mouse Embryonic Stem Cell Self-Renewal
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    LKB1, Salt-Inducible Kinases, and MEF2C Are Linked Dependencies in Acute Myeloid Leukemia
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    RNA Polymerase II Phosphorylated on CTD Serine 5 Interacts with the Spliceosome during Co-transcriptional Splicing
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    Polymer Simulations of Heteromorphic Chromatin Predict the 3D Folding of Complex Genomic Loci
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    Targeting Processive Transcription Elongation via SEC Disruption for MYC-Induced Cancer Therapy
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    The Nuclear Receptor PPARγ Controls Progressive Macrophage Polarization as a Ligand-Insensitive Epigenomic Ratchet of Transcriptional Memory
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    MYC Interacts with the G9a Histone Methyltransferase to Drive Transcriptional Repression and Tumorigenesis
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    A Short Tandem Repeat-Enriched RNA Assembles a Nuclear Compartment to Control Alternative Splicing and Promote Cell Survival
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    Centromeres License the Mitotic Condensation of Yeast Chromosome Arms
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  156. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Enhanced ER proteostasis and temperature differentially impact the mutational tolerance of influenza hemagglutinin
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    The Itaconate Pathway Is a Central Regulatory Node Linking Innate Immune Tolerance and Trained Immunity
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    Examining the Roles of H3K4 Methylation States with Systematically Characterized Antibodies
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    The Mcm2-Ctf4-Polα Axis Facilitates Parental Histone H3-H4 Transfer to Lagging Strands
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  161. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells
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    Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries
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    Capsid-CPSF6 Interaction Licenses Nuclear HIV-1 Trafficking to Sites of Viral DNA Integration
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    PKR Senses Nuclear and Mitochondrial Signals by Interacting with Endogenous Double-Stranded RNAs
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    Dppa2/4 Facilitate Epigenetic Remodeling during Reprogramming to Pluripotency
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    Transcription Elongation Can Affect Genome 3D Structure
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    A Chromatin Basis for Cell Lineage and Disease Risk in the Human Pancreas
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    Neutralizing Gatad2a-Chd4-Mbd3/NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency
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    Architectural Proteins and Pluripotency Factors Cooperate to Orchestrate the Transcriptional Response of hESCs to Temperature Stress
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    Systematic Characterization of Stress-Induced RNA Granulation
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    Coordinated Control of mRNA and rRNA Processing Controls Embryonic Stem Cell Pluripotency and Differentiation
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    Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse
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    Active N6-Methyladenine Demethylation by DMAD Regulates Gene Expression by Coordinating with Polycomb Protein in Neurons
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    Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data
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    Genome-wide Map of R-Loop-Induced Damage Reveals How a Subset of R-Loops Contributes to Genomic Instability
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    The Mitochondrial-Encoded Peptide MOTS-c Translocates to the Nucleus to Regulate Nuclear Gene Expression in Response to Metabolic Stress
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    Diet-Induced Circadian Enhancer Remodeling Synchronizes Opposing Hepatic Lipid Metabolic Processes
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  180. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Role of m6A/m-RNA Methylation in Stress Response Regulation
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    The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes
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    TALE factors use two distinct functional modes to control an essential zebrafish gene expression program
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    Arabidopsis Serrate Coordinates Histone Methyltransferases ATXR5/6 and RNA Processing Factor RDR6 to Regulate Transposon Expression
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    The Epstein-Barr Virus Regulome in Lymphoblastoid Cells
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    Developmental Origin Governs CD8+ T Cell Fate Decisions during Infection
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    Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver
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    Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila
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    BRG1 governs glucocorticoid receptor interactions with chromatin and pioneer factors across the genome
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    Natural Infection of C. elegans by an Oomycete Reveals a New Pathogen-Specific Immune Response
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  198. academic.oup.com academic.oup.com
    Whole-Genome De Novo sequencing reveals unique genes that contributed to the adaptive evolution of the mikado pheasant
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    Molecular, Pathological, Radiological, and Immune Profiling of Non-brainstem Pediatric High-Grade Glioma from the HERBY Phase II Randomized Trial
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    Spliceosome Profiling Visualizes Operations of a Dynamic RNP at Nucleotide Resolution
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    Systematic Discovery of RNA Binding Proteins that Regulate MicroRNA Levels
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    sciencedirect.com/science/article/pii/S1097276518301102
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    Homoeolog-specific activation of genes for heat acclimation in the allopolyploid grass Brachypodium hybridum
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    academic.oup.com/gigascience/article/7/4/giy020/4924998
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    Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch
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    Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation
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    Chromatin Accessibility-Based Characterization of the Gene Regulatory Network Underlying Plasmodium falciparum Blood-Stage Development
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    Atf3 links loss of epithelial polarity to defects in cell differentiation and cytoarchitecture
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    Constitutively Active SMAD2/3 Are Broad-Scope Potentiators of Transcription-Factor-Mediated Cellular Reprogramming
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