325 Matching Annotations
  1. Sep 2021
  2. www.sciencedirect.com www.sciencedirect.com
    Muscle-secreted neurturin couples myofiber oxidative metabolism and slow motor neuron identity
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    1. scibot 30 Sep 2021
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      DOI: 10.1016/j.cmet.2021.09.003

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    sciencedirect.com/science/article/pii/S1550413121004228
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    Elevated transcription of transposable elements is accompanied by het-siRNA-driven de novo DNA methylation in grapevine embryogenic callus
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    1. scibot 22 Sep 2021
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      DOI: 10.1186/s12864-021-07973-9

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    link.springer.com/article/10.1186/s12864-021-07973-9
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Inhibition of Postn Rescues Myogenesis Defects in Myotonic Dystrophy Type 1 Myoblast Model
    1
    1. scibot 09 Sep 2021
      RRID:SCR_015530

      DOI: 10.3389/fcell.2021.710112

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    ncbi.nlm.nih.gov/pmc/articles/PMC8417118/
  5. www.sciencedirect.com www.sciencedirect.com
    Integrated protocol for exitron and exitron-derived neoantigen identification using human RNA-seq data with ScanExitron and ScanNeo
    1
    1. scibot 08 Sep 2021
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      DOI: 10.1016/j.xpro.2021.100788

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    sciencedirect.com/science/article/pii/S2666166721004949
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    Multiplatform discovery and regulatory function analysis of structural variations in non-small cell lung carcinoma
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    1. scibot 08 Sep 2021
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      DOI: 10.1016/j.celrep.2021.109660

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    sciencedirect.com/science/article/pii/S2211124721011049
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    Transcriptional control of brain tumor stem cells by a carbohydrate binding protein
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    1. scibot 01 Sep 2021
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      DOI: 10.1016/j.celrep.2021.109647

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    sciencedirect.com/science/article/pii/S2211124721010901
  8. Aug 2021
  9. www.sciencedirect.com www.sciencedirect.com
    Erythroid mitochondrial retention triggers myeloid-dependent type I interferon in human SLE
    1
    1. scibot 16 Aug 2021
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      DOI: 10.1016/j.cell.2021.07.021

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    sciencedirect.com/science/article/pii/S0092867421008801
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    Dysregulated oxalate metabolism is a driver and therapeutic target in atherosclerosis
    1
    1. scibot 14 Aug 2021
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      DOI: 10.1016/j.celrep.2021.109420

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    sciencedirect.com/science/article/pii/S2211124721008330
  11. academic.oup.com academic.oup.com
    Untitled document
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    1. scibot 11 Aug 2021
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      DOI: 10.1093/gigascience/giy068

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    academic.oup.com/gigascience/article/7/7/giy068/5040257
  12. academic.oup.com academic.oup.com
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    1. scibot 10 Aug 2021
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      DOI: 10.1093/gigascience/giy141

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    academic.oup.com/gigascience/article/7/12/giy141/5202467
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    1. scibot 10 Aug 2021
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      DOI: 10.1093/gigascience/giy115

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    ncbi.nlm.nih.gov/pmc/articles/PMC6204424/
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    1. scibot 08 Aug 2021
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      DOI: 10.1093/gigascience/giy115

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    academic.oup.com/gigascience/article/7/10/giy115/5092772
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1. scibot 07 Aug 2021
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      DOI: 10.7554/eLife.40037

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    ncbi.nlm.nih.gov/pmc/articles/PMC6249008/
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The COVIDome Explorer researcher portal
    1
    1. scibot 05 Aug 2021
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      DOI: 10.1016/j.celrep.2021.109527

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    ncbi.nlm.nih.gov/pmc/articles/PMC8316015/
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat
    1
    1. scibot 05 Aug 2021
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      DOI: 10.1093/gigascience/giz018

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    ncbi.nlm.nih.gov/pmc/articles/PMC6461119/
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.1093/gigascience/giy141

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    ncbi.nlm.nih.gov/pmc/articles/PMC6304105/
  19. academic.oup.com academic.oup.com
    De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
    1
    1. scibot 05 Aug 2021
      RRID:SCR_015530

      DOI: 10.1093/gigascience/giz039

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    academic.oup.com/gigascience/article/8/5/giz039/5488105
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      DOI: 10.1093/gigascience/giz033

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    academic.oup.com/gigascience/article/8/4/giz033/5429686
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    1. scibot 03 Aug 2021
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      DOI: 10.1016/j.celrep.2019.03.104

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    ncbi.nlm.nih.gov/pmc/articles/PMC6486482/
  22. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome‐level assembly of Southern catfish (Silurus meridionalis) provides insights into visual adaptation to the nocturnal and benthic lifestyles
    1
    1. scibot 02 Aug 2021
      RRID:SCR_015530

      DOI: 10.1111/1755-0998.13338

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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13338
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease
    1
    1. scibot 01 Aug 2021
      RRID:SCR_015530

      DOI: 10.1016/j.cell.2018.08.067

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    ncbi.nlm.nih.gov/pmc/articles/PMC6176871/
  24. Jul 2021
  25. www.sciencedirect.com www.sciencedirect.com
    Aldosterone-Sensing Neurons in the NTS Exhibit State-Dependent Pacemaker Activity and Drive Sodium Appetite via Synergy with Angiotensin II Signaling
    1
    1. scibot 31 Jul 2021
      RRID:SCR_015530

      DOI: 10.1016/j.neuron.2017.09.014

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    sciencedirect.com/science/article/pii/S0896627317308541
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1. scibot 31 Jul 2021
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      DOI: 10.1016/j.celrep.2019.03.093

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    ncbi.nlm.nih.gov/pmc/articles/PMC6499398/
  27. elifesciences.org elifesciences.org
    Sustained expression of HeyL is critical for the proliferation of muscle stem cells in overloaded muscle
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    1. scibot 30 Jul 2021
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      DOI: 10.7554/eLife.48284

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    elifesciences.org/articles/48284
  28. link.springer.com link.springer.com
    Cold-induced lipid dynamics and transcriptional programs in white adipose tissue
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    1. scibot 30 Jul 2021
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      DOI: 10.1186/s12915-019-0693-x

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    link.springer.com/article/10.1186/s12915-019-0693-x
  29. www.sciencedirect.com www.sciencedirect.com
    P Granules Protect RNA Interference Genes from Silencing by piRNAs
    1
    1. scibot 29 Jul 2021
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      DOI: 10.1016/j.devcel.2019.07.026

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    sciencedirect.com/science/article/pii/S153458071930632X
  30. www.sciencedirect.com www.sciencedirect.com
    Histone H3K9 Methyltransferase G9a in Oocytes Is Essential for Preimplantation Development but Dispensable for CG Methylation Protection
    1
    1. scibot 28 Jul 2021
      HISAT2 v2.0.5

      DOI: 10.1016/j.celrep.2019.03.002

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    sciencedirect.com/science/article/pii/S2211124719303092
  31. www.sciencedirect.com www.sciencedirect.com
    Mature Human White Adipocytes Cultured under Membranes Maintain Identity, Function, and Can Transdifferentiate into Brown-like Adipocytes
    1
    1. scibot 28 Jul 2021
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      DOI: 10.1016/j.celrep.2019.03.026

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    sciencedirect.com/science/article/pii/S2211124719303420
  32. www.sciencedirect.com www.sciencedirect.com
    Acetylation of Cytidine in mRNA Promotes Translation Efficiency
    1
    1. scibot 27 Jul 2021
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      DOI: 10.1016/j.cell.2018.10.030

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    sciencedirect.com/science/article/pii/S0092867418313837
  33. www.sciencedirect.com www.sciencedirect.com
    Exon Junction Complex Shapes the Transcriptome by Repressing Recursive Splicing
    1
    1. scibot 27 Jul 2021
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      DOI: 10.1016/j.molcel.2018.09.033

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    sciencedirect.com/science/article/pii/S1097276518308323
  34. Jun 2021
  35. www.sciencedirect.com www.sciencedirect.com
    The CTNNBIP1-CLSTN1 fusion transcript regulates human neocortical development
    1
    1. scibot 30 Jun 2021
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      DOI: 10.1016/j.celrep.2021.109290

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    sciencedirect.com/science/article/pii/S2211124721006616
  36. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    Activation of nuclear receptor PXR induces atherogenic lipids and PCSK9 through SREBP2‐mediated mechanism
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      DOI: 10.1111/bph.15433

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    bpspubs.onlinelibrary.wiley.com/doi/10.1111/bph.15433
  37. www.sciencedirect.com www.sciencedirect.com
    A drastic shift in the energetic landscape of toothed whale sperm cells
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      DOI: 10.1016/j.cub.2021.05.062

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    sciencedirect.com/science/article/pii/S0960982221007600
  38. May 2021
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ZC3H4 restricts non-coding transcription in human cells
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      DOI: 10.7554/eLife.67305

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    ncbi.nlm.nih.gov/pmc/articles/PMC8137146/
  40. cancerdiscovery.aacrjournals.org cancerdiscovery.aacrjournals.org
    Cell of Origin Influences Pancreatic Cancer Subtype
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      DOI: 10.1158/2159-8290.CD-20-0633

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    cancerdiscovery.aacrjournals.org/content/11/3/660
  41. www.sciencedirect.com www.sciencedirect.com
    Derivation of Intermediate Pluripotent Stem Cells Amenable to Primordial Germ Cell Specification
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      DOI: 10.1016/j.stem.2020.11.003

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    sciencedirect.com/science/article/pii/S1934590920305415
  42. www.sciencedirect.com www.sciencedirect.com
    Expression of the Neuronal tRNA n-Tr20 Regulates Synaptic Transmission and Seizure Susceptibility
    1
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      DOI: 10.1016/j.neuron.2020.07.023

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    sciencedirect.com/science/article/pii/S0896627320305675
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    SAFB2 Enables the Processing of Suboptimal Stem-Loop Structures in Clustered Primary miRNA Transcripts
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      DOI: 10.1016/j.molcel.2020.05.011

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    sciencedirect.com/science/article/pii/S1097276520303129
  44. www.sciencedirect.com www.sciencedirect.com
    Chromatin Accessibility Dynamics and a Hierarchical Transcriptional Regulatory Network Structure for Plant Somatic Embryogenesis
    1
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      DOI: 10.1016/j.devcel.2020.07.003

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    sciencedirect.com/science/article/pii/S1534580720305517
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Defects in translation-dependent quality control pathways lead to convergent molecular and neurodevelopmental pathology
    1
    1. scibot 05 May 2021
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      DOI: 10.7554/eLife.66904

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    ncbi.nlm.nih.gov/pmc/articles/PMC8075583/
  46. Apr 2021
  47. academic.oup.com academic.oup.com
    A chromosome-level reference genome of the hazelnut, Corylus heterophylla Fisch
    1
    1. scibot 24 Apr 2021
      RRID:SCR_015530

      DOI: 10.1093/gigascience/giab027

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    academic.oup.com/gigascience/article/10/4/giab027/6237163
  48. gigabytejournal.com gigabytejournal.com
    The genome of Tripterygium wilfordii and characterization of the celastrol biosynthesis pathway
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    A pan-cancer transcriptome analysis of exitron splicing identifies novel cancer driver genes and neoepitopes
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    Single-cell transcriptomics identifies gene expression networks driving differentiation and tumorigenesis in the human fallopian tube
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  51. Mar 2021
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    A chromosome‐level genome of the spider Trichonephila antipodiana reveals the genetic basis of its polyphagy and evidence of an ancient whole-genome duplication event
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    Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis)
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  55. Feb 2021
  56. elifesciences.org elifesciences.org
    Def6 regulates endogenous type-I interferon responses in osteoblasts and suppresses osteogenesis
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    Serotonin signaling by maternal neurons upon stress ensures progeny survival
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    Direct reprogramming of oligodendrocyte precursor cells into GABAergic inhibitory neurons by a single homeodomain transcription factor Dlx2
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  59. Jan 2021
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    A chromosome-level genome assembly of the oriental river prawn, Macrobrachium nipponense
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    Pituitary stem cells produce paracrine WNT signals to control the expansion of their descendant progenitor cells
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    Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation
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    Specific Neuroligin3–αNeurexin1 signaling regulates GABAergic synaptic function in mouse hippocampus
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  64. Dec 2020
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    Chromosome-level draft genome of a diploid plum (Prunus salicina)
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  66. Nov 2020
  67. elifesciences.org elifesciences.org
    GTPBP1 resolves paused ribosomes to maintain neuronal homeostasis
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  68. Sep 2020
  69. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Construction of a chromosome-scale long-read reference genome assembly for potato
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  70. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Rrp6 Moonlights in an RNA Exosome-Independent Manner to Promote Cell Survival and Gene Expression during Stress
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    Generation of a chromosome-scale genome assembly of the insect-repellent terpenoid-producing Lamiaceae species, Callicarpa americana
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  72. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome‐level genome assembly of a cyprinid fish Onychostoma macrolepis by integration of Nanopore Sequencing, Bionano and Hi‐C technology
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    OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature
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    Draft Genome of the Asian Buffalo Leech Hirudinaria manillensis
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    Regulatory Dynamics of Tet1 and Oct4 Resolve Stages of Global DNA Demethylation and Transcriptomic Changes in Reprogramming
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    Alternative splicing of coq-2 controls the levels of rhodoquinone in animals
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    Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease
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    Islet O-GlcNAcylation Is Required for Lipid Potentiation of Insulin Secretion through SERCA2
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    NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency
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    Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution
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    Tissue-resident macrophages promote extracellular matrix homeostasis in the mammary gland stroma of nulliparous mice
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    Chromosome-level genome assembly of the female western mosquitofish ( Gambusia affinis )
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    Chromosome-level genome assembly and annotation of the loquat ( Eriobotrya japonica ) genome
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    Structure-Mediated RNA Decay by UPF1 and G3BP1
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    Squamous trans-differentiation of pancreatic cancer cells promotes stromal inflammation
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    Atrx Deletion in Neurons Leads to Sexually Dimorphic Dysregulation of miR-137 and Spatial Learning and Memory Deficits
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    Fetal HLA-G mediated immune tolerance and interferon response in preeclampsia
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    Recruitment of mRNAs to P granules by condensation with intrinsically-disordered proteins
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    Mycoparasitism illuminated by genome and transcriptome sequencing of Coniothyrium minitans, an important biocontrol fungus of the plant pathogen Sclerotinia sclerotiorum
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      DOI: 10.1099/mgen.0.000345

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  90. Jan 2020
  91. elifesciences.org elifesciences.org
    Evolution of Yin and Yang isoforms of a chromatin remodeling subunit precedes the creation of two genes
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    Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation
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    Two Separation-of-Function Isoforms of Human TPP1 Dictate Telomerase Regulation in Somatic and Germ Cells
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  94. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Distinct mechanisms of microRNA sorting into cancer cell-derived extracellular vesicle subtypes
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    On-Site Ribosome Remodeling by Locally Synthesized Ribosomal Proteins in Axons
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    A chromosome-scale assembly of the major African malaria vector Anopheles funestus
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      DOI: 10.1093/gigascience/giz063

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    Genome and population sequencing of a chromosome-level genome assembly of the Chinese tapertail anchovy ( Coilia nasus ) provides novel insights into migratory adaptation
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      DOI: 10.1093/gigascience/giz157

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    The piRNA Response to Retroviral Invasion of the Koala Genome
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    Receptor-specific interactome as a hub for rapid cue-induced selective translation in axons
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    Generation of Blastocyst-like Structures from Mouse Embryonic and Adult Cell Cultures
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    De novo genome assembly of the endangered Acer yangbiense , a plant species with extremely small populations endemic to Yunnan Province, China
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      DOI: 10.1093/gigascience/giz085

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    Chromosomal-level assembly of the blood clam, Scapharca ( Anadara ) broughtonii , using long sequence reads and Hi-C
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      DOI: 10.1093/gigascience/giz067

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    Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome
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      DOI: 10.1093/gigascience/giz115

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    Oligodendrocyte Intrinsic miR-27a Controls Myelination and Remyelination
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    The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates
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      DOI: 10.1093/gigascience/giz099

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    Genetic basis for coordination of meiosis and sexual structure maturation in Cryptococcus neoformans
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    Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat
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      DOI: 10.1093/gigascience/giz018

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    The genomic basis for colonizing the freezing Southern Ocean revealed by Antarctic toothfish and Patagonian robalo genomes
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      DOI: 10.1093/gigascience/giz016

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    De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
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      DOI: 10.1093/gigascience/giz039

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    Drug Screening in Human PSC-Cardiac Organoids Identifies Pro-proliferative Compounds Acting via the Mevalonate Pathway
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      DOI: 10.1016/j.stem.2019.03.009

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    Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection
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      DOI: 10.1093/gigascience/giz052

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  118. Nov 2018
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    A Feedforward Mechanism Mediated by Mechanosensitive Ion Channel PIEZO1 and Tissue Mechanics Promotes Glioma Aggression
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    CD8+ T Cell Priming in Established Chronic Viral Infection Preferentially Directs Differentiation of Memory-like Cells for Sustained Immunity
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    A Short Tandem Repeat-Enriched RNA Assembles a Nuclear Compartment to Control Alternative Splicing and Promote Cell Survival
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    Muscle Satellite Cell Cross-Talk with a Vascular Niche Maintains Quiescence via VEGF and Notch Signaling
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    Suppression of Plant Immunity by Fungal Chitinase-like Effectors
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    Mutant NPM1 Maintains the Leukemic State through HOX Expression
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    MEF2B Instructs Germinal Center Development and Acts as an Oncogene in B Cell Lymphomagenesis
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    Capsid-CPSF6 Interaction Licenses Nuclear HIV-1 Trafficking to Sites of Viral DNA Integration
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    Epigenetic and Transcriptomic Profiling of Mammary Gland Development and Tumor Models Disclose Regulators of Cell State Plasticity
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    A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities
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    A Novel Eukaryotic Denitrification Pathway in Foraminifera
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  133. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Stable STIM1 Knockdown in Self-Renewing Human Neural Precursors Promotes Premature Neural Differentiation
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    Improved de novo genome assembly and analysis of the Chinese cucurbit Siraitia grosvenorii, also known as monk fruit or luo-han-guo
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  135. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis
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  136. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ICE1 promotes the link between splicing and nonsense-mediated mRNA decay
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      HISAT2

      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC5896957/
  137. www.sciencedirect.com www.sciencedirect.com
    Extremely Divergent Haplotypes in Two Toxin Gene Complexes Encode Alternative Venom Types within Rattlesnake Species
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    1. scibot 05 Nov 2018
      RRID: SCR_015530

      Curator: @Jmenke

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    sciencedirect.com/science/article/pii/S0960982218302161
  138. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    1. scibot 05 Nov 2018
      RRID:SCR_015530

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    ncbi.nlm.nih.gov/pmc/articles/PMC5734877/
  139. Nov 2017
  140. www.sciencedirect.com www.sciencedirect.com
    Aldosterone-Sensing Neurons in the NTS Exhibit State-Dependent Pacemaker Activity and Drive Sodium Appetite via Synergy with Angiotensin II Signaling
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    1. scibot 08 Nov 2017
      RRID: SCR_015530

      Curator: @Jmenke

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      (HISAT2, RRID:SCR_015530)

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    sciencedirect.com/science/article/pii/S0896627317308541