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  2. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The chromosome-level genome assembly of an endangered herb Bergenia scopulosa provides insights into local adaptation and genomic vulnerability under climate change
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    1. scibot 21 Dec 2024
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      DOI: 10.1093/gigascience/giae091

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    pmc.ncbi.nlm.nih.gov/articles/PMC11604060/
  3. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Construction and analysis of telomere-to-telomere genomes for 2 sweet oranges: Longhuihong and Newhall (Citrus sinensis)
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    1. scibot 21 Dec 2024
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      DOI: 10.1093/gigascience/giae084

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    pmc.ncbi.nlm.nih.gov/articles/PMC11590112/
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    Deep profiling deconstructs features associated with memory CD8+ T cell tissue residence
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    1. scibot 21 Dec 2024
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      DOI: 10.1016/j.immuni.2024.11.007

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    sciencedirect.com/science/article/pii/S1074761324005223
  5. Dec 2024
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    Integrated proteomic and transcriptomic landscape of human placenta in small for gestational age infants
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    sciencedirect.com/science/article/pii/S2589004224026488
  7. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome provides insights into the evolution of specialized centromere sequences in sandalwood
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    1. scibot 13 Dec 2024
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      DOI: 10.1093/gigascience/giae096

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  8. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Modulation of RNA processing genes during sleep-dependent memory
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    1. scibot 10 Dec 2024
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      DOI: 10.7554/eLife.89023

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    pmc.ncbi.nlm.nih.gov/articles/PMC11623928/
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    Discovery, Validation and Mechanistic Study of XPO1 Inhibition in the Treatment of Triple-Negative Breast Cancer
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    1. scibot 04 Dec 2024
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      DOI: 10.3390/cancers16233980

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    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
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    1. scibot 02 Dec 2024
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    sciencedirect.com/science/article/pii/S0092867424012728
  11. Nov 2024
  12. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Modeling early phenotypes of Parkinson’s disease by age-induced midbrain-striatum assembloids
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    1. scibot 26 Nov 2024
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      DOI: 10.1038/s42003-024-07273-4

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    pmc.ncbi.nlm.nih.gov/articles/PMC11585662/
  13. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Preclinical Multi-Omic Assessment of Pioglitazone in Skeletal Muscles of Mice Implanted with Human HER2/neu Overexpressing Breast Cancer Xenografts
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    1. scibot 14 Nov 2024
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      DOI: 10.3390/cancers16213640

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  14. 52.53.155.43 52.53.155.43
    cir-24-0324-html.html
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      DOI: 10.1158/2326-6066.cir-24-0324

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    New Small-Molecule SERCA Inhibitors Enhance Treatment Efficacy in Lenvatinib-Resistant Papillary Thyroid Cancer
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    1. scibot 07 Nov 2024
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      DOI: 10.3390/ijms251910646

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  16. Oct 2024
  17. www.sciencedirect.com www.sciencedirect.com
    HOXDeRNA activates a cancerous transcription program and super enhancers via genome-wide binding
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    1. scibot 09 Oct 2024
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      DOI: 10.1016/j.molcel.2024.09.018

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    sciencedirect.com/science/article/pii/S1097276524007755
  18. www.biorxiv.org www.biorxiv.org
    MITF Targets in Gastrointestinal Stromal Tumors: Implications in Autophagy and Extracellular Vesicle Secretion
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    1. scibot 04 Oct 2024
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      DOI: 10.1101/2024.09.10.612253

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    biorxiv.org/content/10.1101/2024.09.10.612253v1
  19. Sep 2024
  20. www.biorxiv.org www.biorxiv.org
    Integrative multiomic approaches reveal ZMAT3 and p21 as conserved hubs in the p53 tumor suppression network
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    1. scibot 28 Sep 2024
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    Acute increase of protein O-GlcNAcylation in mice leads to transcriptome changes in the brain opposite to what is observed in Alzheimer’s Disease
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    1. scibot 28 Sep 2024
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      DOI: 10.1101/2024.09.19.613769

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  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Whole-genome sequencing of the invasive golden apple snail Pomacea canaliculata from Asia reveals rapid expansion and adaptive evolution
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      DOI: 10.1093/gigascience/giae064

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    ncbi.nlm.nih.gov/pmc/articles/PMC11417965/
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Prevalent Fast Evolution of Genes Involved in Heterochromatin Functions
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      DOI: 10.1093/molbev/msae181

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    ncbi.nlm.nih.gov/pmc/articles/PMC11408610/
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference genome, mitochondrial genome and associated transcriptomes for the critically endangered swift parrot ( Lathamus discolor)
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    1. scibot 25 Sep 2024
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      DOI: 10.12688/f1000research.144352.2

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    ncbi.nlm.nih.gov/pmc/articles/PMC11411239/
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Telomere-to-telomere gap-free genome assembly of the endangered Yangtze finless porpoise and East Asian finless porpoise
    2
    1. scibot 18 Sep 2024
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      DOI: 10.1093/gigascience/giae067

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    2. scibot 18 Sep 2024
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      DOI: 10.1093/gigascience/giae067

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    ncbi.nlm.nih.gov/pmc/articles/PMC11403816/
  26. www.biorxiv.org www.biorxiv.org
    Sex-specific chemosensory gene expression in the whitelined sphinx moth (Lepidoptera: Hyles lineata) suggests a role for odorant-binding proteins in host plant choice
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    1. scibot 15 Sep 2024
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      DOI: 10.1101/2024.09.04.611314

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    biorxiv.org/content/10.1101/2024.09.04.611314v1
  27. www.biorxiv.org www.biorxiv.org
    A near-complete genome assembly of the bearded dragon Pogona vitticeps provides insights into the origin of Pogona sex chromosomes
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    1. scibot 13 Sep 2024
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      DOI: 10.1101/2024.09.05.611321

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    biorxiv.org/content/10.1101/2024.09.05.611321v1
  28. www.sciencedirect.com www.sciencedirect.com
    Multiple direct and indirect roles of the Paf1 complex in transcription elongation, splicing, and histone modifications
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    1. scibot 10 Sep 2024
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      DOI: 10.1016/j.celrep.2024.114730

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    sciencedirect.com/science/article/pii/S2211124724010817
  29. 52.53.155.43 52.53.155.43
    The effect of baseline O2 conditions on the response of prostate cancer cells to hypoxia
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      DOI: 10.1152/ajpcell.00155.2024

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    52.53.155.43/450c4ecfd2324159c1bf6d34b6f73a75b512ce38/alva-et-al-2024-the-effect-of-baseline-o2-conditions-on-the-response-of-prostate-cancer-cells-to-hypoxia-html.html
  30. journals.physiology.org journals.physiology.org
    The effect of baseline O2 conditions on the response of prostate cancer cells to hypoxia
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    1. scibot 06 Sep 2024
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      DOI: 10.1152/ajpcell.00155.2024

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  31. Aug 2024
  32. www.sciencedirect.com www.sciencedirect.com
    Disruption of nuclear speckle integrity dysregulates RNA splicing in C9ORF72-FTD/ALS
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      DOI: 10.1016/j.neuron.2024.07.025

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  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first high-altitude autotetraploid haplotype-resolved genome assembled (Rhododendron nivale subsp. boreale) provides new insights into mountaintop adaptation
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      DOI: 10.1093/gigascience/giae052

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    ncbi.nlm.nih.gov/pmc/articles/PMC11304948/
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    A trade-off in evolution: the adaptive landscape of spiders without venom glands
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      DOI: 10.1093/gigascience/giae048

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    ncbi.nlm.nih.gov/pmc/articles/PMC11299198/
  35. Jul 2024
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosomal-level genome assembly and single-nucleotide polymorphism sites of black-faced spoonbill Platalea minor
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      DOI: 10.46471/gigabyte.130

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    ncbi.nlm.nih.gov/pmc/articles/PMC11273517/
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Epigenetic Induction of Cancer-Testis Antigens and Endogenous Retroviruses at Single-Cell Level Enhances Immune Recognition and Response in Glioma
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      DOI: 10.1158/2767-9764.CRC-23-0566

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    ncbi.nlm.nih.gov/pmc/articles/PMC11275559/
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Actin-dependent astrocytic infiltration is a key step for axon defasciculation during remodeling
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      DOI: 10.1016/j.celrep.2023.112117

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    ncbi.nlm.nih.gov/pmc/articles/PMC9989824/
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De-novo long-read genome assembly and annotation of the luna moth (Actias luna) fully resolves repeat-rich silk genes
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      DOI: 10.1093/gbe/evae148

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    ncbi.nlm.nih.gov/pmc/articles/PMC11258402/
  40. www.sciencedirect.com www.sciencedirect.com
    Preclinical study and phase II trial of adapting low-dose radiotherapy to immunotherapy in small cell lung cancer
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      DOI: 10.1016/j.medj.2024.06.002

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    sciencedirect.com/science/article/pii/S2666634024002484
  41. www.sciencedirect.com www.sciencedirect.com
    Comparative transcriptomic profiling reveals a role for Olig1 in promoting axon regeneration
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    sciencedirect.com/science/article/pii/S221112472400843X
  42. www.cell.com www.cell.com
    Thermal facial image analyses reveal quantitative hallmarks of aging and metabolic diseases
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      DOI: 10.1016/j.cmet.2024.05.012

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    cell.com/cell-metabolism/abstract/S1550-4131(24)00188-8
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Gapless genome assembly and epigenetic profiles reveal gene regulation of whole-genome triplication in lettuce
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      DOI: 10.1093/gigascience/giae043

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    ncbi.nlm.nih.gov/pmc/articles/PMC11238431/
  44. onlinelibrary.wiley.com onlinelibrary.wiley.com
    ABC Efflux Transporters and Solute Carriers in the Early Developing Brain of a Marsupial Monodelphis domestica (South American Gray Short-Tailed Opossum)
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      DOI: 10.1002/cne.25655

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    onlinelibrary.wiley.com/doi/full/10.1002/cne.25655
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated re-analysis of transcriptomic and proteomic datasets reveals potential mechanisms for Zika viral-based oncolytic therapy in neuroblastoma
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      DOI: 10.12688/f1000research.132627.3

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    ncbi.nlm.nih.gov/pmc/articles/PMC11187533/
  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi
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      DOI: 10.1093/gigascience/giae036

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  47. Jun 2024
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome of Peucedanum praeruptorum Dunn provides insights into the genome evolution and coumarin biosynthesis
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    Mechanisms of hepatic steatosis in chickens: integrated analysis of the host genome, molecular phenomics and gut microbiome
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    Cell-type-specific effects of age and sex on human cortical neurons
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  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the rare and endangered Grantham’s camellia, Camellia granthamiana
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  52. May 2024
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    Novel Spirocyclic Dimer, SpiD3, Targets Chronic Lymphocytic Leukemia Survival Pathways with Potent Preclinical Effects
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  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PABPC1L induces IDO1 to promote tryptophan metabolism and immune suppression in renal cell carcinoma
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  55. 52.53.155.43 52.53.155.43
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
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  56. 52.53.155.43 52.53.155.43
    RAD21 deficiency drives corneal to scleral differentiation fate switching via upregulating WNT9B
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  57. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Positive and negative feedback regulation of the TGF-β1 explains two equilibrium states in skin aging
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    Genome assembly of the edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae)
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  59. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the common chiton, Liolophura japonica (Lischke, 1873)
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    Preclinical Multi-Omic Assessment of Pioglitazone in Skeletal Muscles of Mice Implanted with Human HER2/neu Overexpressing Breast Cancer Xenografts
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  61. Apr 2024
  62. www.sciencedirect.com www.sciencedirect.com
    Single-cell senescence identification reveals senescence heterogeneity, trajectory, and modulators
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  63. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Reprogramming the Intrahepatic Cholangiocarcinoma Immune Microenvironment by Chemotherapy and CTLA-4 Blockade Enhances Anti–PD-1 Therapy
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    Telomere dysfunction alters intestinal stem cell dynamics to promote cancer
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  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Developmental pyrethroid exposure disrupts molecular pathways for MAP kinase and circadian rhythms in mouse brain
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  66. Mar 2024
  67. www.sciencedirect.com www.sciencedirect.com
    Chromosome level genome assembly and transcriptome analysis of E11 cells infected by tilapia lake virus
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    Peripheral neuronal activation shapes the microbiome and alters gut physiology
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    Prevalent fast evolution of genes involved in heterochromatin functions
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    PUS1 regulates erythropoiesis via tRNA pseudouridylation and cytoplasmic translation
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  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SAW: an efficient and accurate data analysis workflow for Stereo-seq spatial transcriptomics
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    Sexually dimorphic control of affective state processing and empathic behaviors
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    The transcription factor NF-κB orchestrates nucleosome remodeling during the primary response to Toll-like receptor 4 signaling
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  74. Feb 2024
  75. www.sciencedirect.com www.sciencedirect.com
    Sustained antidepressant effects of ketamine metabolite involve GABAergic inhibition-mediated molecular dynamics in aPVT glutamatergic neurons
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    Genetic background variation impacts microglial heterogeneity and disease progression in amyotrophic lateral sclerosis model mice
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  77. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome-wide p63-target gene analyses reveal TAp63/NRF2-dependent oxidative stress responses
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  78. www.nature.com www.nature.com
    CRISPR/Cas9-mediated deletion of a GA-repeat in human GPM6B leads to disruption of neural cell differentiation from NT2 cells
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  79. Jan 2024
  80. www.nature.com www.nature.com
    CRISPR/Cas9-mediated deletion of a GA-repeat in human GPM6B leads to disruption of neural cell differentiation from NT2 cells
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  81. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    O6-Methylguanine DNA Methyltransferase Regulates β-glucan-induced Trained Immunity of Macrophages via Farnesoid X Receptor and AMPK
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    Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis
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    Discrete prefrontal neuronal circuits determine repeated stress-induced behavioral phenotypes in male mice
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    Mitochondrial isocitrate dehydrogenase impedes CAR T cell function by restraining antioxidant metabolism and histone acetylation
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  85. Dec 2023
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    SARS-CoV-2 RNA stabilizes host mRNAs to elicit immunopathogenesis
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    Dissecting embryonic and extraembryonic lineage crosstalk with stem cell co-culture
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  88. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A novel patient-derived meningioma spheroid model as a tool to study and treat epithelial-to-mesenchymal transition (EMT) in meningiomas
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  89. Nov 2023
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    Truncated radial glia as a common precursor in the late corticogenesis of gyrencephalic mammals
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      DOI: 10.7554/eLife.91406

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  91. www.biorxiv.org www.biorxiv.org
    Age-induced midbrain-striatum assembloids model early phenotypes of Parkinson’s disease
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  92. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Precision Medicine and Complex Disease: Blood pressure and the kidney cortex transcriptome response to high-sodium diet challenge in female nonhuman primates
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      DOI: 10.1152/physiolgenomics.00144.2021

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  93. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Acid-base homeostasis orchestrated by NHE1 defines the pancreatic stellate cell phenotype in pancreatic cancer
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      DOI: 10.1172/jci.insight.170928

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  94. Oct 2023
  95. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator
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      DOI: 10.1093/gigascience/giad090

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  96. 52.53.155.43 52.53.155.43
    Distinct Hypoxia-induced Translational Profiles of Embryonic and Adult-derived Macrophages
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      DOI: 10.1016/j.isci.2023.107985

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  97. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Construction and analysis of the chromosome-level haplotype-resolved genomes of two Crassostrea oyster congeners: Crassostrea angulata and Crassostrea gigas
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  98. www.sciencedirect.com www.sciencedirect.com
    Prenatal alcohol alters inflammatory signatures in enteric portal tissues following adult-onset cerebrovascular ischemic stroke
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  99. Sep 2023
  100. www.sciencedirect.com www.sciencedirect.com
    The Drosophila ecdysone receptor promotes or suppresses proliferation according to ligand level
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      DOI: 10.1016/j.devcel.2023.08.032

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    Characterization of the male-specific region containing the candidate sex-determining gene in Amur catfish (Silurus asotus) using third-generation- and pool-sequencing data
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    Integration of eQTL and machine learning to dissect causal genes with pleiotropic effects in genetic regulation networks of seed cotton yield
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  103. Aug 2023
  104. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids
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      DOI: 10.1093/gigascience/giad064

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    Circadian modulation by time-restricted feeding rescues brain pathology and improves memory in mouse models of Alzheimer’s disease
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  106. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    TRAF7 is an essential regulator of blood vessel integrity during mouse embryonic and neonatal development
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  107. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Modelling host- Trypanosoma brucei gambiense interactions in vitro using human induced pluripotent stem cell-derived cortical brain organoids
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  108. 52.53.155.43 52.53.155.43
    Loss of CtBP2 may be a mechanistic link between metabolic derangements and progressive impairment of pancreatic β cell function
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  109. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Original research: Defining the spatial distribution of extracellular adenosine revealed a myeloid-dependent immunosuppressive microenvironment in pancreatic ductal adenocarcinoma
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      DOI: 10.1136/jitc-2022-006457

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  110. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Tomatidine targets ATF4-dependent signaling and induces ferroptosis to limit pancreatic cancer progression
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  111. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Proteasome Inhibition Sensitizes Liposarcoma to MDM2 Inhibition with Nutlin-3 by Activating the ATF4/CHOP Stress Response Pathway
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      DOI: 10.1158/0008-5472.CAN-22-3173

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  112. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Inhibition of DNMT1 methyltransferase activity via glucose-regulated O-GlcNAcylation alters the epigenome
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      DOI: 10.7554/eLife.85595

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  113. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A comparison of the impact on neuronal transcriptome and cognition of rAAV5 transduction with three different doses in the mouse hippocampus
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      DOI: 10.3389/fnmol.2023.1195327

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  114. Jul 2023
  115. www.sciencedirect.com www.sciencedirect.com
    The stability of the myelinating oligodendrocyte transcriptome is regulated by the nuclear lamina
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  116. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic analyses provide insights into the evolution and salinity adaptation of halophyte Tamarix chinensis
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      DOI: 10.1093/gigascience/giad053

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  117. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
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  118. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Prenatal Δ9-tetrahydrocannabinol exposure in males leads to motivational disturbances related to striatal epigenetic dysregulation
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      DOI: 10.1016/j.biopsych.2021.09.017

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    Co-targeting RANK pathway treats and prevents acquired resistance to CDK4/6 inhibitors in luminal breast cancer
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  120. 52.53.155.43 52.53.155.43
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  121. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the hybrid grapevine Vitis ‘Chambourcin’
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  122. Jun 2023
  123. 52.53.155.43 52.53.155.43
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  124. www.sciencedirect.com www.sciencedirect.com
    Excitatory amino acid transporter 1 supports adult hippocampal neural stem cell self-renewal
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    The maturation and aging trajectory of Marchantia polymorpha at single-cell resolution
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  126. 52.53.155.43 52.53.155.43
    Modelling host-Trypanosoma brucei gambiense interactions in vitro using human induced pluripotent stem cell-derived cortical brain organoids
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  127. May 2023
  128. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evolution of Resistance to Irinotecan in Cancer Cells Involves Generation of Topoisomerase-Guided Mutations in Non-Coding Genome That Reduce the Chances of DNA Breaks
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  129. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)
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  130. academic.oup.com academic.oup.com
    A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes
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      DOI: 10.1093/g3journal/jkad090

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  131. www-sciencedirect-com.ezproxy.auckland.ac.nz www-sciencedirect-com.ezproxy.auckland.ac.nz
    Bovine blastocyst-like structures derived from stem cell cultures
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      DOI: 10.1016/j.stem.2023.04.003

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  132. Apr 2023
  133. www.sciencedirect.com www.sciencedirect.com
    Large-scale differentiation of iPSC-derived motor neurons from ALS and control subjects
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      DOI: 10.1016/j.neuron.2023.01.010

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  134. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Molecular mechanisms underlying hematophagia revealed by comparative analyses of leech genomes
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  135. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
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      DOI: 10.1093/gigascience/giad022

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  136. Mar 2023
  137. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Study on tillering stage cold tolerant response in overwintering cultivated rice via comparative transcriptomic
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      DOI: 10.1002/fes3.450

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  138. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Atria: an ultra-fast and accurate trimmer for adapter and quality trimming
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  139. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the roundjaw bonefish (Albula glossodonta), a vulnerable circumtropical sportfish
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      DOI: 10.46471/gigabyte.44

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  140. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Inactivation of interleukin-30 in colon cancer stem cells via CRISPR/Cas9 genome editing inhibits their oncogenicity and improves host survival
    1
    1. scibot 24 Mar 2023
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  141. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the deep-sea coral Lophelia pertusa
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  142. www.sciencedirect.com www.sciencedirect.com
    Nicotinamide riboside supplementation is not associated with altered methylation homeostasis in Parkinson’s disease
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    sciencedirect.com/science/article/pii/S2589004223003553
  143. www.sciencedirect.com www.sciencedirect.com
    Transcriptional control of nucleus accumbens neuronal excitability by retinoid X receptor alpha tunes sensitivity to drug rewards
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    1. scibot 11 Mar 2023
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      DOI: 10.1016/j.neuron.2023.02.013

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  144. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Quality parameters for RNA preparations from biopsies of ulcerated human skin
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    ncbi.nlm.nih.gov/pmc/articles/PMC9984735/
  145. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Exogenous abscisic acid prolongs the dormancy of recalcitrant seed of Panax notoginseng
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  146. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference genome for the critically endangered woylie, Bettongia penicillata ogilbyi
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650285/
  147. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the humpback puffer, Tetraodon palembangensis
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    1. scibot 02 Mar 2023
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  148. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650269/
  149. Feb 2023
  150. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Impaired iron recycling from erythrocytes is an early hallmark of aging
    1
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      DOI: 10.7554/eLife.79196

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  151. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Actin-dependent astrocytic infiltration is a key step for axon defasciculation during remodeling
    1
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  152. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome assembly of Ostrea denselamellosa provides initial insights into its evolution
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      DOI: 10.1016/j.ygeno.2023.110582

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  153. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus
    1
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      DOI: 10.1093/gigascience/giad002

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    ncbi.nlm.nih.gov/pmc/articles/PMC9912274/
  154. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Expansion and loss of sperm nuclear basic protein genes in Drosophila correspond with genetic conflicts between sex chromosomes
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      DOI: 10.7554/eLife.85249

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  155. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An updated version of the Madagascar periwinkle genome
    1
    1. scibot 10 Feb 2023
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      DOI: 10.12688/f1000research.129212.1

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  156. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Hippocampal RNA sequencing in mice selectively bred for high and low activity
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    1. scibot 03 Feb 2023
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      DOI: 10.1111/gbb.12832

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    onlinelibrary.wiley.com/doi/10.1111/gbb.12832
  157. Jan 2023
  158. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers
    1
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      DOI: 10.1158/2159-8290.CD-22-0489

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  159. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ANGPTL4-Mediated Promotion of Glycolysis Facilitates the Colonization of Fusobacterium nucleatum in Colorectal Cancer
    1
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      DOI: 10.1158/0008-5472.CAN-21-2273

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  160. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome-level genome assembly of Dastarcus helophoroides provides insights into CYP450 genes expression upon insecticide exposure
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      DOI: 10.1002/ps.7319

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    onlinelibrary.wiley.com/doi/10.1002/ps.7319
  161. Dec 2022
  162. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization
    1
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      DOI: 10.1093/gigascience/giac120

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  163. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing
    1
    1. scibot 09 Dec 2022
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      DOI: 10.1093/gigascience/giac099

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  164. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Hedgehog regulation of epithelial cell state and morphogenesis in the larynx
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      DOI: 10.7554/eLife.77055

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  165. Nov 2022
  166. www.sciencedirect.com www.sciencedirect.com
    Essential role of MESP1-RING1A complex in cardiac differentiation
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    sciencedirect.com/science/article/pii/S1534580722007614
  167. academic.oup.com academic.oup.com
    The whole-genome assembly of an endangered Salicaceae species: Chosenia arbutifolia (Pall.) A. Skv
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      DOI: 10.1093/gigascience/giac109

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac109/6827246
  168. f1000research.com f1000research.com
    F1000Research Article: Inference of a genome-wide protein-coding gene set of the inshore hagfish <i>Eptatretus burgeri</i>.
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      DOI: 10.12688/f1000research.124719.1

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    f1000research.com/articles/11-1270
  169. academic.oup.com academic.oup.com
    Selection signatures in goats reveal a novel deletion mutant underlying cashmere yield and diameter
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      DOI: 10.1093/gigascience/giac107

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac107/6795292
  170. academic.oup.com academic.oup.com
    Capparis spinosa var. herbacea genome provides the first genomic instrument for a diversity and evolution study of the Capparaceae family
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      DOI: 10.1093/gigascience/giac106

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  171. Oct 2022
  172. aacrjournals.org aacrjournals.org
    CircIPO7 Promotes Nasopharyngeal Carcinoma Metastasis and Cisplatin Chemoresistance by Facilitating YBX1 Nuclear Localization
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      DOI: 10.1158/1078-0432.CCR-22-0991

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  173. www.sciencedirect.com www.sciencedirect.com
    Circadian transcriptional pathway atlas highlights a proteasome switch in intermittent fasting
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  174. wellcomeopenresearch.org wellcomeopenresearch.org
    Quality parameters for RNA preparations from biopsies of ulcerated human skin
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      DOI: 10.12688/wellcomeopenres.18052.1

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  175. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multiomic characterization and drug testing establish circulating tumor cells as an ex vivo tool for personalized medicine
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      DOI: 10.1016/j.isci.2022.105081

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  176. 52.53.155.43 52.53.155.43
    1-s2.0-S2589004222013530-main-html.html
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  177. Sep 2022
  178. f1000research.com f1000research.com
    Circadian signatures of anterior hypothalamus in time-restricted feeding
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      DOI: 10.12688/f1000research.125368.1

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    f1000research.com/articles/11-1087
  179. academic.oup.com academic.oup.com
    Identification of candidate sex‐specific genomic regions in male and female Asian arowana genomes
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      DOI: 10.1093/gigascience/giac085

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac085/6700067
  180. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of key endosymbiont genes may facilitate early host control of the chromatophore in Paulinella
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      DOI: 10.1016/j.isci.2022.104974

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  181. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Intracellular cholesterol pools regulate oncogenic signaling and epigenetic circuitries in Early T-cell Precursor Acute Lymphoblastic Leukemia
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      DOI: 10.1158/2159-8290.CD-21-0551

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  182. Aug 2022
  183. www.sciencedirect.com www.sciencedirect.com
    The sage genome provides insight into the evolutionary dynamics of diterpene biosynthesis gene cluster in plants
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      DOI: 10.1016/j.celrep.2022.111236

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    sciencedirect.com/science/article/pii/S2211124722010531
  184. Jul 2022
  185. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome of the booklouse, Liposcelis brunnea, provides insight into louse evolution and environmental stress adaptation
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      DOI: 10.1093/gigascience/giac062

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  186. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characterization of the Genomic and Immunological Diversity of Malignant Brain Tumors Through Multi-Sector Analysis
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      DOI: 10.1158/2159-8290.CD-21-0291

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  187. www.researchsquare.com www.researchsquare.com
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      DOI: 10.21203/rs.3.rs-658360/v1

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    Spatiotemporal genomic analysis reveals distinct molecular features in recurrent stage I non-small cell lung cancers
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    Group 3 innate lymphocytes make a distinct contribution to Type 17 immunity in bladder defence
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    A chromosome-level genome assembly and intestinal transcriptome of Trypoxylus dichotomus (Coleoptera: Scarabaeidae) to understand its lignocellulose digestion ability
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    Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis
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    Bacteria reduce flagellin synthesis to evade microglia-astrocyte-driven immunity in the brain
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    Single-Cell RNA Sequencing Analysis Using Fluidigm C1 Platform for Characterization of Heterogeneous Transcriptomes
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  194. Jun 2022
  195. aacrjournals.org aacrjournals.org
    Quantification of neoantigen-mediated immunoediting in cancer evolution
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  196. academic.oup.com academic.oup.com
    A chromosome-level genome assembly of Artocarpus nanchuanensis (Moraceae), an extremely endangered fruit tree
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  197. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Integrative metabolomics and transcriptomics analysis reveals novel therapeutic vulnerabilities in lung cancer
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    EED is required for mouse primordial germ cell differentiation in the embryonic gonad
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    Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine
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    Targeting LIPA independent of its lipase activity is a therapeutic strategy in solid tumors via induction of endoplasmic reticulum stress
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    Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers
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  202. May 2022
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    F1000Research Article: The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
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    Sexually dimorphic RNA helicases DDX3X and DDX3Y differentially regulate RNA metabolism through phase separation
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    Cytoplasmic proteotoxicity regulates HRI-dependent phosphorylation of eIF2α via the Hsp70-Bag3 module
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    Lessons learned about the biology and genomics of Diaphorina citri infection with “Candidatus Liberibacter asiaticus” by integrating new and archived organ-specific transcriptome data
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  207. Apr 2022
  208. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    TNF Signaling Acts Downstream of MiR-322/-503 in Regulating DM1 Myogenesis
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    An adult-stage transcriptional program for survival of serotonergic connectivity
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    A high-quality assembled genome and its comparative analysis decode the adaptive molecular mechanism of the number one Chinese cotton variety CRI-12
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  211. faseb.onlinelibrary.wiley.com faseb.onlinelibrary.wiley.com
    Maintenance of glutamine synthetase expression alleviates endotoxin-induced sepsis via alpha-ketoglutarate-mediated demethylation
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  212. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Presence of H3K4me3 on Paternally Expressed Genes of the Paternal Genome From Sperm to Implantation
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  213. Mar 2022
  214. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes
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  215. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Distribution and regulatory roles of oxidized 5-methylcytosines in DNA and RNA of the basidiomycete fungi Laccaria bicolor and Coprinopsis cinerea
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  216. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    High-quality assembly of the reference genome for scarlet sage, Salvia splendens, an economically important ornamental plant
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    Metabolic incorporation of electron-rich ribonucleosides enhances APEX-seq for profiling spatially restricted nascent transcriptome
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    Nonsense-mediated RNA decay is a unique vulnerability of cancer cells harboring SF3B1 or U2AF1 mutations
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    Genome of the ramshorn snail Biomphalaria straminea—an obligate intermediate host of schistosomiasis
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  220. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants
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  221. Feb 2022
  222. www.nature.com www.nature.com
    Global mapping of RNA G-quadruplexes (G4-RNAs) using G4RP-seq
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  223. Jan 2022
  224. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map
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  225. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nuclear NAD+-biosynthetic enzyme NMNAT1 facilitates development and early survival of retinal neurons
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  226. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Enhancer RNA Expression in Response to Glucocorticoid Treatment in Murine Macrophages
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    Heat shock factor 1 (HSF1) cooperates with estrogen receptor α (ERα) in the regulation of estrogen action in breast cancer cells
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  228. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    AP-2α Regulates S-phase and is a Marker for Sensitivity to PI3K-inhibitor Buparlisib in Colon Cancer
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  229. Dec 2021
  230. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck)
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    Relayed signaling between mesenchymal progenitors and muscle stem cells ensures adaptive stem cell response to increased mechanical load
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  232. Nov 2021
  233. academic.oup.com academic.oup.com
    De novo screening of disease-resistant genes from the chromosome-level genome of rare minnow using CRISPR-cas9 random mutation
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    Homer1a regulates Shank3 expression and underlies behavioral vulnerability to stress in a model of Phelan-McDermid syndrome
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    sciencedirect.com/science/article/pii/S2211124721014960
  235. Oct 2021
  236. www.embopress.org www.embopress.org
    Reprogramming of glucocorticoid receptor function by hypoxia
    1
    1. scibot 27 Oct 2021
      RRID:SCR_015530

      DOI: 10.15252/embr.202153083

      Resource: HISAT2 (RRID:SCR_015530)

      Curator: @scibot

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    embopress.org/doi/full/10.15252/embr.202153083
  237. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of Channa argus and Channa maculata and comparative analysis of their temperature adaptability
    1
    1. scibot 26 Oct 2021
      RRID:SCR_015530

      DOI: 10.1093/gigascience/giab070

      Resource: HISAT2 (RRID:SCR_015530)

      Curator: @scibot

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    academic.oup.com/gigascience/article/10/10/giab070/6407244
  238. www.nature.com www.nature.com
    Single-cell RNA sequencing for the identification of early-stage lung cancer biomarkers from circulating blood
    1
    1. scibot 23 Oct 2021
      RRID:SCR_015530

      DOI: 10.1038/s41525-021-00248-y

      Resource: HISAT2 (RRID:SCR_015530)

      Curator: @scibot

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    nature.com/articles/s41525-021-00248-y