287 Matching Annotations
  1. Feb 2022
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The transcriptional corepressor CTBP-1 acts with the SOX family transcription factor EGL-13 to maintain AIA interneuron cell identity in Caenorhabditis elegans
    2
    1. scibot 11 Feb 2022
      RRID:SCR_017344

      DOI: 10.7554/eLife.74557

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    2. scibot 10 Feb 2022
      RRID:SCR_017344

      DOI: 10.7554/eLife.74557

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    ncbi.nlm.nih.gov/pmc/articles/PMC8816384/
  3. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Stress conditions promote Leishmania hybridization in vitro marked by expression of the ancestral gamete fusogen HAP2 as revealed by single-cell RNA-seq
    1
    1. scibot 02 Feb 2022
      RRID:SCR_017344

      DOI: 10.7554/eLife.73488

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    ncbi.nlm.nih.gov/pmc/articles/PMC8794473/
  4. Jan 2022
  5. www.sciencedirect.com www.sciencedirect.com
    scDART-seq reveals distinct m6A signatures and mRNA methylation heterogeneity in single cells
    1
    1. scibot 29 Jan 2022
      RRID:SCR_017344

      DOI: 10.1016/j.molcel.2021.12.038

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    sciencedirect.com/science/article/pii/S1097276521011436
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    iMyoblasts for ex vivo and in vivo investigations of human myogenesis and disease modeling
    1
    1. scibot 29 Jan 2022
      RRID:SCR_017344

      DOI: 10.7554/eLife.70341

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    ncbi.nlm.nih.gov/pmc/articles/PMC8789283/
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Modeling uniquely human gene regulatory function via targeted humanization of the mouse genome
    1
    1. scibot 22 Jan 2022
      RRID:SCR_017344

      DOI: 10.1038/s41467-021-27899-w

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    ncbi.nlm.nih.gov/pmc/articles/PMC8758698/
  8. www.sciencedirect.com www.sciencedirect.com
    Tfap2b specifies an embryonic melanocyte stem cell that retains adult multifate potential
    1
    1. scibot 12 Jan 2022
      RRID:SCR_017344

      DOI: 10.1016/j.celrep.2021.110234

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    sciencedirect.com/science/article/pii/S2211124721017435
  9. Dec 2021
  10. www.sciencedirect.com www.sciencedirect.com
    Virally encoded connectivity transgenic overlay RNA sequencing (VECTORseq) defines projection neurons involved in sensorimotor integration
    1
    1. scibot 22 Dec 2021
      RRID:SCR_017344

      DOI: 10.1016/j.celrep.2021.110131

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    sciencedirect.com/science/article/pii/S2211124721016272
  11. www.sciencedirect.com www.sciencedirect.com
    Engagement of the costimulatory molecule ICOS in tissues promotes establishment of CD8+ tissue-resident memory T cells
    1
    1. scibot 21 Dec 2021
      RRID:SCR_017344

      DOI: 10.1016/j.immuni.2021.11.017

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    sciencedirect.com/science/article/pii/S1074761321005094
  12. elifesciences.org elifesciences.org
    Coronary blood vessels from distinct origins converge to equivalent states during mouse and human development
    1
    1. scibot 21 Dec 2021
      RRID:SCR_017344

      DOI: 10.7554/eLife.70246

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    elifesciences.org/articles/70246
  13. www.sciencedirect.com www.sciencedirect.com
    Parity-induced changes to mammary epithelial cells control NKT cell expansion and mammary oncogenesis
    1
    1. scibot 08 Dec 2021
      RRID:SCR_017344

      DOI: 10.1016/j.celrep.2021.110099

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    sciencedirect.com/science/article/pii/S221112472101593X
  14. elifesciences.org elifesciences.org
    scAAVengr, a transcriptome-based pipeline for quantitative ranking of engineered AAVs with single-cell resolution
    1
    1. scibot 01 Dec 2021
      RRID:SCR_017344

      DOI: 10.7554/eLife.64175

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    elifesciences.org/articles/64175
  15. Nov 2021
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Intraocular dendritic cells characterize HLA-B27-associated acute anterior uveitis
    1
    1. scibot 19 Nov 2021
      RRID:SCR_017344

      DOI: 10.7554/eLife.67396

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    ncbi.nlm.nih.gov/pmc/articles/PMC8594918/
  17. www.sciencedirect.com www.sciencedirect.com
    Deletion of pancreas-specific miR-216a reduces beta-cell mass and inhibits pancreatic cancer progression in mice
    1
    1. scibot 12 Nov 2021
      RRID:SCR_017344

      DOI: 10.1016/j.xcrm.2021.100434

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    sciencedirect.com/science/article/pii/S2666379121002962
  18. www.sciencedirect.com www.sciencedirect.com
    Kr-h1 maintains distinct caste-specific neurotranscriptomes in response to socially regulated hormones
    1
    1. scibot 05 Nov 2021
      RRID:SCR_017344

      DOI: 10.1016/j.cell.2021.10.006

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    sciencedirect.com/science/article/pii/S0092867421011806
  19. Oct 2021
  20. www.nature.com www.nature.com
    Comparative cellular analysis of motor cortex in human, marmoset and mouse
    1
    1. scibot 14 Oct 2021
      RRID:SCR_017344

      DOI: 10.1038/s41586-021-03465-8

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    nature.com/articles/s41586-021-03465-8
  21. www.nature.com www.nature.com
    A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
    1
    1. scibot 14 Oct 2021
      RRID:SCR_017344

      DOI: 10.1038/s41586-021-03500-8

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    nature.com/articles/s41586-021-03500-8
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Fine-tuned repression of Drp1-driven mitochondrial fission primes a ‘stem/progenitor-like state’ to support neoplastic transformation
    1
    1. scibot 11 Oct 2021
      RRID:SCR_017344

      DOI: 10.7554/eLife.68394

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    ncbi.nlm.nih.gov/pmc/articles/PMC8497058/
  23. www.sciencedirect.com www.sciencedirect.com
    Transcriptional and functional divergence in lateral hypothalamic glutamate neurons projecting to the lateral habenula and ventral tegmental area
    1
    1. scibot 08 Oct 2021
      RRID:SCR_017344

      DOI: 10.1016/j.neuron.2021.09.020

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    sciencedirect.com/science/article/pii/S0896627321006930
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SCIGA: Software for large-scale, single-cell immunoglobulin repertoire analysis
    1
    1. scibot 02 Oct 2021
      RRID:SCR_017344

      DOI: 10.1093/gigascience/giab050

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    ncbi.nlm.nih.gov/pmc/articles/PMC8478610/
  25. Sep 2021
  26. www.sciencedirect.com www.sciencedirect.com
    Follicular dendritic cells restrict interleukin-4 availability in germinal centers and foster memory B cell generation
    1
    1. scibot 23 Sep 2021
      RRID:SCR_017344

      DOI: 10.1016/j.immuni.2021.08.028

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    sciencedirect.com/science/article/pii/S1074761321003629
  27. www.sciencedirect.com www.sciencedirect.com
    Protocols for endothelial cell isolation from mouse tissues: brain, choroid, lung, and muscle
    1
    1. scibot 23 Sep 2021
      RRID:SCR_01695

      DOI: 10.1016/j.xpro.2021.100508

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      Curator: @Naa003

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      RRIDCUR:Unresolved RRID:SCR_017344 RRIDCUR:Incorrect
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    sciencedirect.com/science/article/pii/S266616672100215X
  28. elifesciences.org elifesciences.org
    Single-cell analysis of the ventricular-subventricular zone reveals signatures of dorsal and ventral adult neurogenesis
    1
    1. scibot 22 Sep 2021
      RRID:SCR_017344

      DOI: 10.7554/eLife.67436

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    elifesciences.org/articles/67436
  29. www.sciencedirect.com www.sciencedirect.com
    Systematic discovery and validation of T cell targets directed against oncogenic KRAS mutations
    1
    1. scibot 17 Sep 2021
      RRID:SCR_017344

      DOI: 10.1016/j.crmeth.2021.100084

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    sciencedirect.com/science/article/pii/S2667237521001399
  30. www.sciencedirect.com www.sciencedirect.com
    Resident memory CD8+ T cells in regional lymph nodes mediate immunity to metastatic melanoma
    1
    1. scibot 15 Sep 2021
      SCR_017344

      DOI: 10.1016/j.immuni.2021.08.019

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    sciencedirect.com/science/article/pii/S1074761321003514
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    TGFβ signalling is required to maintain pluripotency of human naïve pluripotent stem cells
    1
    1. scibot 14 Sep 2021
      RRID:SCR_017344

      DOI: 10.7554/eLife.67259

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    ncbi.nlm.nih.gov/pmc/articles/PMC8410071/
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of Mir146b with aging contributes to inflammation and mitochondrial dysfunction in thioglycollate-elicited peritoneal macrophages
    1
    1. scibot 11 Sep 2021
      RRID:SCR_017344

      DOI: 10.7554/eLife.66703

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    ncbi.nlm.nih.gov/pmc/articles/PMC8412946/
  33. www.embopress.org www.embopress.org
    Single-cell transcriptomics of suprachiasmatic nuclei reveal a Prokineticin-driven circadian network
    1
    1. scibot 09 Sep 2021
      RRID:SCR_017344

      DOI: 10.15252/embj.2021108614

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    embopress.org/doi/full/10.15252/embj.2021108614
  34. Aug 2021
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell RNA analysis identifies pre-migratory neural crest cells expressing markers of differentiated derivatives
    1
    1. scibot 21 Aug 2021
      RRID:SCR_017344

      DOI: 10.7554/eLife.66078

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    ncbi.nlm.nih.gov/pmc/articles/PMC8367380/
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nascent transcript and single-cell RNA-seq analysis defines the mechanism of action of the LSD1 inhibitor INCB059872 in myeloid leukemia
    1
    1. scibot 21 Aug 2021
      RRID:SCR_017344

      DOI: 10.1016/j.gene.2020.144758

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    ncbi.nlm.nih.gov/pmc/articles/PMC7401316/
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Molecular characterization of projection neuron subtypes in the mouse olfactory bulb
    1
    1. scibot 17 Aug 2021
      RRID:SCR_017344

      DOI: 10.7554/eLife.65445

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    ncbi.nlm.nih.gov/pmc/articles/PMC8352594/
  38. insight.jci.org insight.jci.org
    <i>TNFRSF13B</i> polymorphisms counteract microbial adaptation to natural IgA
    1
    1. scibot 14 Aug 2021
      RRID:SCR_017344

      DOI: 10.1172/jci.insight.148208

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    insight.jci.org/articles/view/148208
  39. Jul 2021
  40. www.nature.com www.nature.com
    Urothelial organoids originating from Cd49f high mouse stem cells display Notch-dependent differentiation capacity
    1
    1. scibot 30 Jul 2021
      Cell Ranger

      DOI: 10.1038/s41467-019-12307-1

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    nature.com/articles/s41467-019-12307-1
  41. elifesciences.org elifesciences.org
    Stochastic cell-cycle entry and cell-state-dependent fate outputs of injury-reactivated tectal radial glia in zebrafish
    1
    1. scibot 29 Jul 2021
      Cell Ranger Single Cell

      DOI: 10.7554/eLife.48660

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    elifesciences.org/articles/48660
  42. www.sciencedirect.com www.sciencedirect.com
    An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial Cell Heterogeneity and Angiogenic Candidates
    1
    1. scibot 27 Jul 2021
      RRID: SCR_01695

      DOI: 10.1016/j.ccell.2019.12.001

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    sciencedirect.com/science/article/pii/S1535610819305719
  43. www.sciencedirect.com www.sciencedirect.com
    Specialized endothelial tip cells guide neuroretina vascularization and blood-retina-barrier formation
    1
    1. scibot 17 Jul 2021
      RRID:SCR_017344

      DOI: 10.1016/j.devcel.2021.06.021

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    sciencedirect.com/science/article/pii/S1534580721005281
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    IgV somatic mutation of human anti–SARS-CoV-2 monoclonal antibodies governs neutralization and breadth of reactivity
    1
    1. scibot 15 Jul 2021
      RRID:SCR_017344

      DOI: 10.1172/jci.insight.147386

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    ncbi.nlm.nih.gov/pmc/articles/PMC8262290/
  45. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    Phase I Trial of N-803, an IL15 Receptor Agonist, with Rituximab in Patients with Indolent Non-Hodgkin Lymphoma
    1
    1. scibot 14 Jul 2021
      RRID:SCR_017344

      DOI: 10.1158/1078-0432.CCR-20-4575

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    clincancerres.aacrjournals.org/content/27/12/3339
  46. Jun 2021
  47. www.cell.com www.cell.com
    Endogenous retroviruses promote homeostatic and inflammatory responses to the microbiota
    1
    1. scibot 24 Jun 2021
      RRID:SCR_017344

      DOI: 10.1016/j.cell.2021.05.020

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    cell.com/cell/fulltext/S0092-8674(21)00650-4
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Phenotypic plasticity underlies local invasion and distant metastasis in colon cancer
    1
    1. scibot 17 Jun 2021
      RRID:SCR_017344

      DOI: 10.7554/eLife.61461

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    ncbi.nlm.nih.gov/pmc/articles/PMC8192123/
  49. www.sciencedirect.com www.sciencedirect.com
    Single-cell lineage tracing of metastatic cancer reveals selection of hybrid EMT states
    1
    1. scibot 11 Jun 2021
      RRID:SCR_017344

      DOI: 10.1016/j.ccell.2021.05.005

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    sciencedirect.com/science/article/pii/S1535610821002713
  50. www.sciencedirect.com www.sciencedirect.com
    Sublayer- and cell-type-specific neurodegenerative transcriptional trajectories in hippocampal sclerosis
    1
    1. scibot 09 Jun 2021
      RRID:SCR_017344

      DOI: 10.1016/j.celrep.2021.109229

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    sciencedirect.com/science/article/pii/S2211124721005805
  51. www.sciencedirect.com www.sciencedirect.com
    SARS-CoV-2 infection induces beta cell transdifferentiation
    1
    1. scibot 05 Jun 2021
      RRID:SCR_017344

      DOI: 10.1016/j.cmet.2021.05.015

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    A sustained type I IFN-neutrophil-IL-18 axis drives pathology during mucosal viral infection
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  53. May 2021
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    A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells
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    Fibroblast dedifferentiation as a determinant of successful regeneration
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    Single-Cell RNA Sequencing Reveals Tissue Compartment-Specific Plasticity of Mycosis Fungoides Tumor Cells
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    Transcriptional Programs of Circuit Assembly in the Drosophila Visual System
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    Group 3 Innate Lymphoid Cells Program a Distinct Subset of IL-22BP-Producing Dendritic Cells Demarcating Solitary Intestinal Lymphoid Tissues
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    A single-cell analysis of the Arabidopsis vegetative shoot apex
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    Protocols for endothelial cell isolation from mouse tissues: small intestine, colon, heart, and liver
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    Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)
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  62. Apr 2021
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    Genetically engineered myeloid cells rebalance the core immune suppression program in metastasis
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    Single-Cell Transcriptomics Reveals Early Emergence of Liver Parenchymal and Non-parenchymal Cell Lineages
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    Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells
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    Cascade diversification directs generation of neuronal diversity in the hypothalamus
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    Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia
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    Single-cell transcriptomics identifies gene expression networks driving differentiation and tumorigenesis in the human fallopian tube
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    BET Inhibition Blocks Inflammation-Induced Cardiac Dysfunction and SARS-CoV-2 Infection
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  70. Mar 2021
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    Short-term exposure to intermittent hypoxia leads to changes in gene expression seen in chronic pulmonary disease
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  72. Feb 2021
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    Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma
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  74. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    RUNX1 marks a luminal castration-resistant lineage established at the onset of prostate development
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  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Heterogenous Populations of Tissue-Resident CD8+ T Cells Are Generated in Response to Infection and Malignancy
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  76. elifesciences.org elifesciences.org
    An atlas of neural crest lineages along the posterior developing zebrafish at single-cell resolution
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  77. Jan 2021
  78. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Runx2-Twist1 interaction coordinates cranial neural crest guidance of soft palate myogenesis
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    Constitutive activation of cellular immunity underlies the evolution of resistance to infection in Drosophila
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    Defining human mesenchymal and epithelial heterogeneity in response to oral inflammatory disease
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    Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing
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  82. Nov 2020
  83. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mapping endothelial-cell diversity in cerebral cavernous malformations at single-cell resolution
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  84. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Three-Dimensional Human Alveolar Stem Cell Culture Models Reveal Infection Response to SARS-CoV-2
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  85. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cellular taxonomy and spatial organization of the murine ventral posterior hypothalamus
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  86. Oct 2020
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    Dynamics of nevus development implicate cell cooperation in the growth arrest of transformed melanocytes
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    Lef1 expression in fibroblasts maintains developmental potential in adult skin to regenerate wounds
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  89. Sep 2020
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    C/EBPα and GATA-2 Mutations Induce Bilineage Acute Erythroid Leukemia through Transformation of a Neomorphic Neutrophil-Erythroid Progenitor
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  91. elifesciences.org elifesciences.org
    Regulation of dynamic pigment cell states at single-cell resolution
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  92. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    A Single-Cell RNA Expression Map of Human Coronavirus Entry Factors
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    Single-Cell Analyses Identify Dysfunctional CD16+ CD8 T Cells in Smokers
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    Cellular Heterogeneity and Lineage Restriction during Mouse Digit Tip Regeneration at Single-Cell Resolution
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    Single cell analysis reveals human cytomegalovirus drives latently infected cells towards an anergic-like monocyte state
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    An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes
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    Transcriptional and Spatial Resolution of Cell Types in the Mammalian Habenula
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    Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma
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    Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis
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    Single-Cell Transcriptome Atlas of Murine Endothelial Cells
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    cell.com/cell/fulltext/S0092-8674(20)30062-3
  101. Aug 2020
  102. www.sciencedirect.com www.sciencedirect.com
    An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial Cell Heterogeneity and Angiogenic Candidates
    1
    1. scibot 14 Aug 2020
      RRID:SCR_01695

      DOI: 10.1016/j.ccell.2019.12.001

      Resource: Cell Ranger (RRID:SCR_017344)

      Curator: @ethanbadger

      SciCrunch record: RRID:SCR_017344

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      RRID:SCR_017344 RRIDCUR:Incorrect RRIDCUR:Unresolved
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    sciencedirect.com/science/article/pii/S1535610819305719
  103. Jan 2020
  104. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Modular transcriptional programs separately define axon and dendrite connectivity
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017344

      DOI: 10.7554/eLife.50822

      Resource: Cell Ranger (RRID:SCR_017344)

      Curator: @evieth

      SciCrunch record: RRID:SCR_017344

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      RRID:SCR_017344 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC6855804/
  105. www.sciencedirect.com www.sciencedirect.com
    High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017344

      DOI: 10.1016/j.cell.2019.09.023

      Resource: Cell Ranger (RRID:SCR_017344)

      Curator: @ethanbadger

      SciCrunch record: RRID:SCR_017344

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      RRID:SCR_017344 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S0092867419310748