20 vHL families were retrospectively identified in SickKids Genetics and Cancer Genetics Program SHIRE genetics database, with data entered between 30 August 1984 and 8 August 2016. 6 members of family 17 tested positive for the c.496_506del germline variant of the VHL gene. The proband (ID 1), cousin (ID 8), and second cousin (ID 25) were asymptomatic at 3Y, 4Y and 9Y respectively. The mother (ID 4) presented with CNS hemangioblastoma (23 and 25Y), retinal angioma (22Y) and renal and pancreatic cyst or tumor (unspecified) (25Y). An aunt (ID 5) presented with retinal angioma (16Y). A first cousin once removed (ID 22) presented with CNS hemangioblastoma (36Y). 2 members were assumed to have the variant, due to personal and family history, but were not genetically confirmed (ID 20 and ID 11). A grandmother (ID 11) and great aunt (ID 20) both presented with CNS hemangioblastoma at 43Y and 40Y respectively. ID 11 also presented with pancreatic and renal cysts or tumors (unspecified) but the age of presentation was unknown.
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PatientID: 8 (Cousin)
KindredID: 17
Case: F, 4Y0M, Ethnicity Unknown
DiseaseAssertion: Asymptomatic
FamilyInfo: 6 members of this family tested positive for the c.496_506del germline variant of the VHL gene. ID 4 presented with CNS hemangioblastoma, retinal angioma and renal and pancreatic abnormalities. ID 1 and 25 were asymptomatic.ID 22 presented with CNS hemangioblastoma. ID 5 presented with retinal angioma. 2 members were assumed to have the variant but were not genetically confirmed (ID 20 and ID 11). ID 11 and 20 presented with CNS hemangioblastoma.
CasePresentingHPOs: N/A
CaseHPOFreeText: N/A
CaseNotHPOs: HP:0005584; HP:0002666; HP:0010797; HP:0000077; HP:0001732; HP:0009711 (Renal cell carcinoma, Pheochromocytoma, Hemangioblastoma, Abnormality of the kidney, Abnormality of the pancreas, Retinal capillary hemangioma)
CaseNotHPOFreeText: N/A
CasePreviousTesting: N/A
PreviouslyPublished: N/A
SupplementalData: Supplementary Table 1.
Variant: p.V166Sfs*4 (c.496_506del)
LegacyVariant: N/A
CaseProblemVariantFreeText: N/A
ClinVarID: 223229, https://www.ncbi.nlm.nih.gov/clinvar/variation/223229/
CAID: N/A
gnomAD: N/A
VariantEvidence: N/AVariantEvidence: It is unclear from the publication if this variant is reported according to legacy (AF010238.1) or NM_000551.3 reference sequence. Clinical notes from the case confirm the reference sequence to be NM_000551.3.
MutationType: deletion; minus_2_frameshift_variant
CivicName: V166SFS*4 (c.496_506del)
MultipleGeneVariants: N/A
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PatientID: 5 (Aunt)
KindredID: 17
Case: F, 38Y0M, Ethnicity Unknown
DiseaseAssertion: VHL
FamilyInfo: 6 members of this family tested positive for the c.496_506del germline variant of the VHL gene. ID 4 presented with CNS hemangioblastoma, retinal angioma and renal and pancreatic abnormalities. ID 1, 25 and 8 were asymptomatic.ID 22 presented with CNS hemangioblastoma. 2 members were assumed to have the variant but were not genetically confirmed (ID 20 and ID 11). ID 11 and 20 presented with CNS hemangioblastoma.
CasePresentingHPOs: HP:0009711 (Retinal capillary hemangioma)
CaseHPOFreeText: This patient presented with retinal angioma (16Y).
CaseNotHPOs: HP:0005584; HP:0002666; HP:0010797; HP:0000077; HP:0001732 (Renal cell carcinoma, Pheochromocytoma, Hemangioblastoma, Abnormality of the kidney, Abnormality of the pancreas)
CaseNotHPOFreeText: N/A
CasePreviousTesting: N/A
PreviouslyPublished: N/A
SupplementalData: Supplementary Table 1.
Variant: p.V166Sfs*4 (c.496_506del)
LegacyVariant: N/A
CaseProblemVariantFreeText: N/A
ClinVarID: 223229, https://www.ncbi.nlm.nih.gov/clinvar/variation/223229/
CAID: N/A
gnomAD: N/A
VariantEvidence: It is unclear from the publication if this variant is reported according to legacy (AF010238.1) or NM_000551.3 reference sequence. Clinical notes from the case confirm the reference sequence to be NM_000551.3.
MutationType: deletion; minus_2_frameshift_variant
CivicName: V166SFS*4 (c.496_506del)
MultipleGeneVariants: N/A
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PatientID: 1 (Proband)
KindredID: 17
Case: F, 3Y0M, Ethnicity Unknown
DiseaseAssertion: Asymptomatic
FamilyInfo: 6 members of this family tested positive for the c.496_506del germline variant of the VHL gene. ID 4 presented with CNS hemangioblastoma, retinal angioma and renal and pancreatic abnormalities. ID 25 and 8 were asymptomatic.ID 22 presented with CNS hemangioblastoma. ID 5 presented with retinal angioma. 2 members were assumed to have the variant but were not genetically confirmed (ID 20 and ID 11). ID 11 and 20 presented with CNS hemangioblastoma.
CasePresentingHPOs: N/A
CaseHPOFreeText: N/A
CaseNotHPOs: HP:0005584; HP:0002666; HP:0010797; HP:0000077; HP:0001732; HP:0009711 (Renal cell carcinoma, Pheochromocytoma, Hemangioblastoma, Abnormality of the kidney, Abnormality of the pancreas, Retinal capillary hemangioma)
CaseNotHPOFreeText: N/A
CasePreviousTesting: N/A
PreviouslyPublished: N/A
SupplementalData: Supplementary Table 1.
Variant: p.V166Sfs*4 (c.496_506del)
LegacyVariant: N/A
CaseProblemVariantFreeText: N/A
ClinVarID: 223229, https://www.ncbi.nlm.nih.gov/clinvar/variation/223229/
CAID: N/A
gnomAD: N/A
VariantEvidence: It is unclear from the publication if this variant is reported according to legacy (AF010238.1) or NM_000551.3 reference sequence. Clinical notes from the case confirm the reference sequence to be NM_000551.3.
MutationType: deletion; minus_2_frameshift_variant
CivicName: V166SFS*4 (c.496_506del)
MultipleGeneVariants: N/A
Tags
- InheritancePattern:AutosomalDominant
- DiseaseEntity:VHL
- Mutation:Germline
- cDNAposition:496
- AminoAcidChange:VALtoSER
- inferred_gene_source:RefSeq
- ProteinPosition:166
- DiseaseEntity:Asymptomatic
- DiseaseEntity:retinalcapillaryhemangioma
- ClinVarID:223229
- MutationType:deletion
- CivicName:V166Sfs*4(c.496_506del)
- inferred_gene_source:ClinVar
- AgeOfPresentation:retinalcapillaryhemangioma:16
- VHL Hypothesis Annotation
- ClinVarID:Yes
- inferred_gene_hgnc:12687
- AssumedRefSeq:NM_000551.3
- Familial
- MutationType:minus_2_frameshift_variant
Annotators
URL
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onlinelibrary.wiley.com onlinelibrary.wiley.com
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c.496_506del11 (p.Val166Serfs*4) in seven individuals, belonging to two pedigrees.
PatientID: 44
KindredID: 44
Case: Sex Unknown, Age Unknown, Ethnicity Unknown
DiseaseAssertion: VHL
FamilyInfo: N/A
CasePresentingHPOs: HP:0010797; HP:0006770 (hemangioblastoma; clear cell renal cell carcinoma)
CaseHPOFreeText: N/A
CaseNotHPOs: HP:0100634; HP:0030405; HP:0009711; HP:0030421 (Neuroendocrine neoplasm, pancreatic neuroendocrine neoplasm, retinal capillary hemangioma, Epididymal neoplasm)
CaseNotHPOFreeText: N/A
CasePreviousTesting: N/A
PreviouslyPublished: 29437867 (likely family 17 - see here for more info)
SupplementalData: Yes; see table S1 for VHL subject genetic and manifestation information.
Variant: p.V166Sfs*4 (c.496_506del11)
LegacyVariant: N/A
CaseProblemVariantFreeText: N/A
ClinVarID: 223229 https://www.ncbi.nlm.nih.gov/clinvar/variation/223229/
CAID: N/A
gnomAD: N/A
VariantEvidence: N/A
MutationType: minus_2_frameshift_variant
CivicName: V166Sfs*4 (c.496_506del)
MultipleGeneVariants: N/A
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c.496_506del11 (p.Val166Serfs*4) in seven individuals, belonging to two pedigrees.
PatientID: 65
KindredID: 65
Case: Sex Unknown, Age Unknown, Ethnicity Unknown
DiseaseAssertion: VHL
FamilyInfo: N/A
CasePresentingHPOs: HP:0010797 (hemangioblastoma)
CaseHPOFreeText: N/A
CaseNotHPOs: HP:0006770; HP:0100634; HP:0030405; HP:0009711; HP:0030421 (clear cell renal cell carcinoma; Neuroendocrine neoplasm, pancreatic neuroendocrine neoplasm, retinal capillary hemangioma, Epididymal neoplasm)
CaseNotHPOFreeText: N/A
CasePreviousTesting: N/A
PreviouslyPublished: 29437867 (likely family 17 - see here for more info)
SupplementalData: Yes; see table S1 for VHL subject genetic and manifestation information.
Variant: p.V166Sfs*4 (c.496_506del11)
LegacyVariant: N/A
CaseProblemVariantFreeText: N/A
ClinVarID: 223229 https://www.ncbi.nlm.nih.gov/clinvar/variation/223229/
CAID: N/A
gnomAD: N/A
VariantEvidence: N/A
MutationType: minus_2_frameshift_variant
CivicName: V166Sfs*4 (c.496_506del)
MultipleGeneVariants: N/A
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c.496_506del11 (p.Val166Serfs*4) in seven individuals, belonging to two pedigrees.
PatientID: 82
KindredID: 82
Case: Sex Unknown, Age Unknown, Ethnicity Unknown
DiseaseAssertion: VHL
FamilyInfo: N/A
CasePresentingHPOs: HP:0009711; HP:0010797 (retinal capillary hemangioma, hemangioblastoma)
CaseHPOFreeText: N/A
CaseNotHPOs: HP:0006770; HP:0100634; HP:0030405; HP:0030421 (clear cell renal cell carcinoma; Neuroendocrine neoplasm, pancreatic neuroendocrine neoplasm, Epididymal neoplasm)
CaseNotHPOFreeText: N/A
CasePreviousTesting: N/A
PreviouslyPublished: 29437867 (likely family 17 - see here for more info)
SupplementalData: Yes; see table S1 for VHL subject genetic and manifestation information.
Variant: p.V166Sfs*4 (c.496_506del)
LegacyVariant: N/A
CaseProblemVariantFreeText: N/A
ClinVarID: 223229 https://www.ncbi.nlm.nih.gov/clinvar/variation/223229/
CAID: N/A
gnomAD: N/A
VariantEvidence: N/A
MutationType: minus_2_frameshift_variant
CivicName: V166Sfs*4 (c.496_506del)
MultipleGeneVariants: N/A
Tags
- DiseaseEntity:clearcellrenalcellcarcinoma
- RefSeq:NM_000551.3
- DiseaseEntity:VHL
- Mutation:Germline
- cDNAposition:496
- AminoAcidChange:VALtoSER
- inferred_gene_source:RefSeq
- ProteinPosition:166
- DiseaseEntity:retinalcapillaryhemangioma
- ClinVarID:223229
- CivicName:V166Sfs*4(c.496_506del)
- DiseaseEntity:hemangioblastoma
- VHL Hypothesis Annotation
- ClinVarID:Yes
- inferred_gene_hgnc:12687
- NoFamilyInfo
- SupplementalData
- MutationType:minus_2_frameshift_variant
Annotators
URL
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