- Jul 2018
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academic.oup.com academic.oup.com
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On 2015 Nov 22, Torsten Seemann commented:
The latest version of Prokka is now available from https://github.com/tseemann/prokka
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On 2014 Mar 25, Stephen Turner commented:
The current state of the art pipelines for bacterial genome annotation rely on web-servers with annotation times measuring in hours or days. Furthermore, sensitive data cannot be uploaded to a publicly accessible web-server. In this paper, the author introduces the Prokka software for rapid bacterial genome annotation. Prokka runs on local hardware, and can completely annotate a typical bacterial genome in under 10 minutes on a laptop. Prokka uses several feature prediction tools combined with similarity searching against annotated protein databases (either user-provided or publicly available). Prokka produces standards-compliant output files suitable for downstream analysis or submission to Genbank. Prokka is open-source and freely available.
This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.
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- Feb 2018
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academic.oup.com academic.oup.com
-
On 2014 Mar 25, Stephen Turner commented:
The current state of the art pipelines for bacterial genome annotation rely on web-servers with annotation times measuring in hours or days. Furthermore, sensitive data cannot be uploaded to a publicly accessible web-server. In this paper, the author introduces the Prokka software for rapid bacterial genome annotation. Prokka runs on local hardware, and can completely annotate a typical bacterial genome in under 10 minutes on a laptop. Prokka uses several feature prediction tools combined with similarity searching against annotated protein databases (either user-provided or publicly available). Prokka produces standards-compliant output files suitable for downstream analysis or submission to Genbank. Prokka is open-source and freely available.
This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY. -
On 2015 Nov 22, Torsten Seemann commented:
The latest version of Prokka is now available from https://github.com/tseemann/prokka
This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.
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