4 Matching Annotations
  1. Jul 2018
    1. On 2015 Nov 22, Torsten Seemann commented:

      The latest version of Prokka is now available from https://github.com/tseemann/prokka


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    2. On 2014 Mar 25, Stephen Turner commented:

      The current state of the art pipelines for bacterial genome annotation rely on web-servers with annotation times measuring in hours or days. Furthermore, sensitive data cannot be uploaded to a publicly accessible web-server. In this paper, the author introduces the Prokka software for rapid bacterial genome annotation. Prokka runs on local hardware, and can completely annotate a typical bacterial genome in under 10 minutes on a laptop. Prokka uses several feature prediction tools combined with similarity searching against annotated protein databases (either user-provided or publicly available). Prokka produces standards-compliant output files suitable for downstream analysis or submission to Genbank. Prokka is open-source and freely available.


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

  2. Feb 2018
    1. On 2014 Mar 25, Stephen Turner commented:

      The current state of the art pipelines for bacterial genome annotation rely on web-servers with annotation times measuring in hours or days. Furthermore, sensitive data cannot be uploaded to a publicly accessible web-server. In this paper, the author introduces the Prokka software for rapid bacterial genome annotation. Prokka runs on local hardware, and can completely annotate a typical bacterial genome in under 10 minutes on a laptop. Prokka uses several feature prediction tools combined with similarity searching against annotated protein databases (either user-provided or publicly available). Prokka produces standards-compliant output files suitable for downstream analysis or submission to Genbank. Prokka is open-source and freely available.


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    2. On 2015 Nov 22, Torsten Seemann commented:

      The latest version of Prokka is now available from https://github.com/tseemann/prokka


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.