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Oct 2025
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BET family BRD3 initiates DSB-induced chromatin remodeling with TIP60 to promote R-loop-mediated HR

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  DOI: 10.1016/j.celrep.2025.116461
  
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Sep 2025
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Preventing CpG hypermethylation in oocytes safeguards mouse development

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Aug 2025
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A fungal chromatin remodeler drives transcription by establishing an open chromatin architecture and activated histone environment

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The catalytic efficiency of METTL16 affects cellular processes by governing the intracellular S-adenosylmethionine setpoint

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pmc.ncbi.nlm.nih.gov/articles/PMC12330366/
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Hypoxia-induced genome-wide DNA demethylation by DNMT3A and EMT of cancer cells

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Jul 2025
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The catalytic efficiency of METTL16 affects cellular processes by governing the intracellular S-adenosylmethionine setpoint

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Generation of germinal-vesicle oocytes from mouse embryonic stem cells under an ovarian soma-free condition

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Jun 2025
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TBX3 advances the developmental chromatin landscape toward the hepatic fate

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Bivalent chromatin instructs lineage specification during hematopoiesis

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Ezh2 Delays Activation of Differentiation Genes During Normal Cerebellar Granule Neuron Development and in Medulloblastoma

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elifesciences.org/reviewed-preprints/105339v1
May 2025
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Division of labor among H3K4 methyltransferases defines distinct facets of homeostatic plasticity

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Jan 2025
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Targeting pancreatic cancer glutamine dependency confers vulnerability to GPX4-dependent ferroptosis

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Sep 2024
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Multiple direct and indirect roles of the Paf1 complex in transcription elongation, splicing, and histone modifications

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Aug 2024
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The fork protection complex promotes parental histone recycling and epigenetic memory

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Jul 2024
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A CPF-like phosphatase module links transcription termination to chromatin silencing

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ncbi.nlm.nih.gov/pmc/articles/PMC7616277/
Apr 2024
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SAFB restricts contact domain boundaries associated with L1 chimeric transcription

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Tumor cell-intrinsic epigenetic dysregulation shapes cancer-associated fibroblasts heterogeneity to metabolically support pancreatic cancer

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Modular dual-color BiAD sensors for locus-specific readout of epigenome modifications in single cells

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Mar 2024
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Histone lysine demethylase 4 family proteins maintain the transcriptional program and adrenergic cellular state of MYCN-amplified neuroblastoma

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DNMT3B PWWP mutations cause hypermethylation of heterochromatin

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The sirtuin-associated human senescence program converges on the activation of placenta-specific gene PAPPA

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Disruption of H3K36 methylation provokes cellular plasticity to drive aberrant glandular formation and squamous carcinogenesis

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Feb 2024
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PCID2 dysregulates transcription and viral RNA processing to promote HIV-1 latency

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Histone methylation readers MRG1/2 interact with PIF4 to promote thermomorphogenesis in Arabidopsis

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Jan 2024
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Spatiotemporal role of SETD2-H3K36me3 in murine pancreatic organogenesis

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XIST directly regulates X-linked and autosomal genes in naive human pluripotent cells

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Nov 2023
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Lineage-specific 3D genome organization is assembled at multiple scales by IKAROS

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Histone methylation mediated by NSD1 is required for the establishment and maintenance of neuronal identities

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RNA polymerase II dynamics and mRNA stability feedback scale mRNA amounts with cell size

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Oct 2023
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Gcn5- and Bre1-mediated Set2 degradation promotes chronological aging of Saccharomyces cerevisiae

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  DOI: 10.1016/j.celrep.2023.113186
  
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Sep 2023
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Perturbations in 3D genome organization can promote acquired drug resistance

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Aug 2023
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Histone variants shape chromatin states in Arabidopsis

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  DOI: 10.7554/eLife.87714
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10393023/
Jul 2023
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TONSOKU is required for the maintenance of repressive chromatin modifications in Arabidopsis

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  DOI: 10.1016/j.celrep.2023.112738
  
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Jun 2023
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Dnmt3bas coordinates transcriptional induction and alternative exon inclusion to promote catalytically active Dnmt3b expression

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  DOI: 10.1016/j.celrep.2023.112587
  
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May 2023
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Epigenetic reprogramming of imprinting at meiosis

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Mechanism of inert inflammation in an immune checkpoint blockade-resistant tumor subtype bearing transcription elongation defects

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Genome-wide epigenetic and mRNA-expression profiling followed by CRISPR/Cas9-mediated gene-disruptions corroborate the MIR141/MIR200C-ZEB1/ZEB2-FGFR1 axis in acquired EMT-associated EGFR TKI-resistance in NSCLC cells

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Decorating chromatin for enhanced genome editing using CRISPR-Cas9

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Resurrection of endogenous retroviruses during aging reinforces senescence

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SETD1A regulates transcriptional pause release of heme biosynthesis genes in leukemia

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Polycomb-mediated repression of paternal chromosomes maintains haploid dosage in diploid embryos of Marchantia

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Visualization of the dynamic interaction between nucleosomal histone H3K9 tri-methylation and HP1α chromodomain in living cells

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Oncogenic ZMYND11-MBTD1 fusion protein anchors the NuA4/TIP60 histone acetyltransferase complex to the coding region of active genes

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Large-scale chromatin reorganization reactivates placenta-specific genes that drive cellular aging

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Reciprocal regulation of phosphatidylcholine synthesis and H3K36 methylation programs metabolic adaptation

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A cell-sorting-based protocol for cell cycle small-scale ChIP sequencing

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Setd2 determines distinct properties of intestinal ILC3 subsets to regulate intestinal immunity

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Transcription factor protein interactomes reveal genetic determinants in heart disease

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SETDB1/NSD-dependent H3K9me3/H3K36me3 dual heterochromatin maintains gene expression profiles by bookmarking poised enhancers

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Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos

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TRACE generates fluorescent human reporter cell lines to characterize epigenetic pathways

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Experiments from unfinished Registered Reports in the Reproducibility Project: Cancer Biology

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SUMOylation of linker histone H1 drives chromatin condensation and restriction of embryonic cell fate identity

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Arabidopsis ATXR2 represses de novo shoot organogenesis in the transition from callus to shoot formation

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The BORDER family of negative transcription elongation factors regulates flowering time in Arabidopsis

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Collective regulation of chromatin modifications predicts replication timing during cell cycle

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Chromatin-mediated alternative splicing regulates cocaine-reward behavior

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Stromal induction of BRD4 phosphorylation Results in Chromatin Remodeling and BET inhibitor Resistance in Colorectal Cancer

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Deterministic Somatic Cell Reprogramming Involves Continuous Transcriptional Changes Governed by Myc and Epigenetic-Driven Modules

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A microRNA negative feedback loop downregulates vesicle transport and inhibits fear memory

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SETD5 Regulates Chromatin Methylation State and Preserves Global Transcriptional Fidelity during Brain Development and Neuronal Wiring

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Transcription Elongation Can Affect Genome 3D Structure

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mfat‐1 transgene protects cultured adult neural stem cells against cobalt chloride–mediated hypoxic injury by activating Nrf2/ARE pathways

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A microRNA negative feedback loop downregulates vesicle transport and inhibits fear memory

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m6A RNA methylation regulates promoter- proximal pausing of RNA polymerase II

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Disrupting Mitochondrial Copper Distribution Inhibits Leukemic Stem Cell Self-Renewal

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Targeting KDM4A epigenetically activates tumor-cell-intrinsic immunity by inducing DNA replication stress

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Robust Hi-C Maps of Enhancer-Promoter Interactions Reveal the Function of Non-coding Genome in Neural Development and Diseases

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Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer

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Human placental cytotrophoblast epigenome dynamics over gestation and alterations in placental disease

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SETD2 Restricts Prostate Cancer Metastasis by Integrating EZH2 and AMPK Signaling Pathways

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Dissecting the impact of regional identity and the oncogenic role of human-specific NOTCH2NL in an hESC model of H3.3G34R-mutant glioma

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Deficiency of histone methyltransferase SETD2 in liver leads to abnormal lipid metabolism and hepatocarcinoma

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Serine metabolism antagonizes antiviral innate immunity by preventing ATP6V0d2-mediated YAP lysosomal degradation

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Integrated genomic analysis reveals key features of long undecoded transcript isoform-based gene repression

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Dynamics of transcription-mediated conversion from euchromatin to facultative heterochromatin at the Xist promoter by Tsix

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A unique histone 3 lysine 14 chromatin signature underlies tissue-specific gene regulation

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Regional identity of human neural stem cells determines oncogenic responses to histone H3.3 mutants

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Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin

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Formation of the CenH3-Deficient Holocentromere in Lepidoptera Avoids Active Chromatin

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Activation of Clustered IFNγ Target Genes Drives Cohesin-Controlled Transcriptional Memory

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Epigenetic Mechanisms Contribute to Evolutionary Adaptation of Gene Network Activity under Environmental Selection

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Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin

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The Human Integrator Complex Facilitates Transcriptional Elongation by Endonucleolytic Cleavage of Nascent Transcripts

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FMRP Control of Ribosome Translocation Promotes Chromatin Modifications and Alternative Splicing of Neuronal Genes Linked to Autism

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Domain Model Explains Propagation Dynamics and Stability of Histone H3K27 and H3K36 Methylation Landscapes

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Fine Chromatin-Driven Mechanism of Transcription Interference by Antisense Noncoding Transcription

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Genome-wide R-loop Landscapes during Cell Differentiation and Reprogramming

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The histone modification reader ZCWPW1 links histone methylation to PRDM9-induced double-strand break repair

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Methionine Metabolism Shapes T Helper Cell Responses through Regulation of Epigenetic Reprogramming

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A Role for FACT in RNA Polymerase II Promoter-Proximal Pausing

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H3K36 Methylation and the Chromodomain Protein Eaf3 Are Required for Proper Cotranscriptional Spliceosome Assembly

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PRC2.1 and PRC2.2 Synergize to Coordinate H3K27 Trimethylation

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The Cytokine TNF Promotes Transcription Factor SREBP Activity and Binding to Inflammatory Genes to Activate Macrophages and Limit Tissue Repair

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Su(var)2-10 and the SUMO Pathway Link piRNA-Guided Target Recognition to Chromatin Silencing

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SETD5 Regulates Chromatin Methylation State and Preserves Global Transcriptional Fidelity during Brain Development and Neuronal Wiring

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Histone Recycling by FACT and Spt6 during Transcription Prevents the Scrambling of Histone Modifications

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MeCP2 Represses the Rate of Transcriptional Initiation of Highly Methylated Long Genes

1
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Native Chromatin Proteomics Reveals a Role for Specific Nucleoporins in Heterochromatin Organization and Maintenance

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GLI2 Modulated by SUFU and SPOP Induces Intestinal Stem Cell Niche Signals in Development and Tumorigenesis

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Polymer Modeling Predicts Chromosome Reorganization in Senescence

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Short-Term Mitochondrial Permeability Transition Pore Opening Modulates Histone Lysine Methylation at the Early Phase of Somatic Cell Reprogramming

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Transcription Elongation Can Affect Genome 3D Structure

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Identification of Therapeutic Targets in Rhabdomyosarcoma through Integrated Genomic, Epigenomic, and Proteomic Analyses

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RNA-Dependent Epigenetic Silencing Directs Transcriptional Downregulation Caused by Intronic Repeat Expansions

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Cross-talk between Lysine-Modifying Enzymes Controls Site-Specific DNA Amplifications

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Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila

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SETD7 Drives Cardiac Lineage Commitment through Stage-Specific Transcriptional Activation

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R-2HG Exhibits Anti-tumor Activity by Targeting FTO/m6A/MYC/CEBPA Signaling

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Cohesin Loss Eliminates All Loop Domains

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The Elongation Factor Spt6 Maintains ESC Pluripotency by Controlling Super-Enhancers and Counteracting Polycomb Proteins

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Multiscale 3D Genome Rewiring during Mouse Neural Development

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A map of human PRDM9 binding provides evidence for novel behaviors of PRDM9 and other zinc-finger proteins in meiosis.

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Early-Life Gene Expression in Neurons Modulates Lasting Epigenetic States

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SAGA Is a General Cofactor for RNA Polymerase II Transcription

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Dynamic Control of X Chromosome Conformation and Repression by a Histone H4K20 Demethylase

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Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation

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Methyltransferase SETD2-Mediated Methylation of STAT1 Is Critical for Interferon Antiviral Activity

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Drosophila Histone Demethylase KDM4A Has Enzymatic and Non-enzymatic Roles in Controlling Heterochromatin Integrity

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The Histone Acetyltransferase Mst2 Protects Active Chromatin from Epigenetic Silencing by Acetylating the Ubiquitin Ligase Brl1

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A Metabolic Function for Phospholipid and Histone Methylation

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Direct screening for chromatin status on DNA barcodes in yeast delineates the regulome of H3K79 methylation by Dot1

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