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Protocol for identifying DNA damage responders through proximity biotinylation of proliferating cell nuclear antigen interactors

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sciencedirect.com/science/article/pii/S2666166725005428
Jul 2025
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2025.07.18.665422v1.full-html.html

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52.53.155.43/89529173f59f5311ca2ce2486365b66a5b1dd9ff/2025.07.18.665422v1.full-html.html
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The role of gene duplication and paralog specialisation in the evolution of the mammalian PRPS complex

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pmc.ncbi.nlm.nih.gov/articles/PMC12238573/
Jun 2025
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PRPS activity tunes redox homeostasis in Myc-driven lymphoma

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pmc.ncbi.nlm.nih.gov/articles/PMC12166406/
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Differentiation Defect Into GABAergic Neurons in Cerebral Organoids From Autism Patients

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1. scibot 15 Jun 2025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12129711/
May 2025
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The mitophagy receptors BNIP3 and NIX mediate tight attachment and expansion of the isolation membrane to mitochondria

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1. scibot 19 May 2025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12071194/
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FUBP3 enhances HIV-1 transcriptional activity and regulates immune response pathways in T cells

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pmc.ncbi.nlm.nih.gov/articles/PMC12005928/
Mar 2025
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Genetically Defined Organoid Models Reveal Mechanisms Driving Squamous Cell Neoplastic Evolution and Identify Potential Therapeutic Vulnerabilities

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pmc.ncbi.nlm.nih.gov/articles/PMC11785044/
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Proximity proteomics reveals a mechanism of fatty acid transfer at lipid droplet-mitochondria- endoplasmic reticulum contact sites

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pmc.ncbi.nlm.nih.gov/articles/PMC11876333/
Feb 2025
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PARP7 inhibits type I interferon signaling to prevent autoimmunity and lung disease

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1. scibot 23 Feb 2025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11837972/
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MTCH2 controls energy demand and expenditure to fuel anabolism during adipogenesis

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1. scibot 23 Feb 2025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11832942/
Dec 2024
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Effect of ΔNp63β on cell cycle and apoptosis in T98G cells

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1. scibot 29 Dec 2024
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11673646/
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PP2A B55α Inhibits Epithelial-Mesenchymal Transition Via Regulation of Slug Expression in Non-Small Cell Lung Cancer

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1. scibot 28 Dec 2024
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11670312/
Sep 2024
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S-acylation of NLRP3 provides a nigericin sensitive gating mechanism that controls access to the Golgi

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1. scibot 27 Sep 2024
  
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  DOI: 10.7554/eLife.94302
  
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elifesciences.org/articles/94302
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Peptide-MHC-targeted retroviruses enable in vivo expansion and gene delivery to tumor-specific T cells

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1. scibot 27 Sep 2024
  
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  DOI: 10.1101/2024.09.18.613594
  
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biorxiv.org/content/10.1101/2024.09.18.613594v1
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Distinct phenotypic consequences of cholangiocarcinoma-associated FGFR2 alterations depend on biliary epithelial maturity

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1. scibot 25 Sep 2024
  
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  DOI: 10.1101/2024.08.30.610360
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11398422/
Aug 2024
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Generation of a conditional cellular senescence model using proximal tubule cells and fibroblasts from human kidneys

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1. scibot 22 Aug 2024
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11324798/
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SLC45A4 encodes a mitochondrial putrescine transporter that promotes GABA de novo synthesis

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1. scibot 18 Aug 2024
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11291067/
Jul 2024
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Activation of Hippo Pathway Damages Slit Diaphragm by Deprivation of Ajuba Proteins

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1. scibot 16 Jul 2024
  
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  plasmid_8449
  
  DOI: 10.1681/ASN.0000000000000107
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10278832/
May 2024
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Tsyn-seq: a T cell synapse-based antigen identification platform

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pmc.ncbi.nlm.nih.gov/articles/PMC11065584/
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CAR T cells outperform CAR NK cells in CAR-mediated effector functions in head-to-head comparison

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ncbi.nlm.nih.gov/pmc/articles/PMC11092129/
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TurboID-Based IRE1 Interactome Reveals Participants of the Endoplasmic Reticulum-Associated Protein Degradation Machinery in the Human Mast Cell Leukemia Cell Line HMC-1.2

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mdpi.com/2073-4409/13/9/747
Mar 2024
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The neuronal transcription factor MEIS2 is a calpain2 protease target

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ncbi.nlm.nih.gov/pmc/articles/PMC10941658/
Feb 2024
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Extracellular Proximity Labeling Reveals an Expanded Interactome for the Matrisome Protein TIMP2

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ncbi.nlm.nih.gov/pmc/articles/PMC10836090/
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NSD1 supports cell growth and regulates autophagy in HPV-negative head and neck squamous cell carcinoma

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ncbi.nlm.nih.gov/pmc/articles/PMC10861597/
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Transcription-Coupled Repair of DNA Interstrand Crosslinks by UVSSA

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ncbi.nlm.nih.gov/pmc/articles/PMC10197625/
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MRE11 liberates cGAS from nucleosome sequestration during tumorigenesis

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ncbi.nlm.nih.gov/pmc/articles/PMC10794148/
Jun 2023
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AMPK phosphorylates ZDHHC13 to increase MC1R activity and suppress melanomagenesis

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1. scibot 03 Jun 2023
  
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  DOI: 10.1158/0008-5472.CAN-22-2595
  
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aacrjournals.org/cancerres/article/83/7/1062/718991/AMPK-Phosphorylates-ZDHHC13-to-Increase-MC1R
Feb 2023
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Monitoring cell fate in 3D organotypic human squamous epithelial cultures

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sciencedirect.com/science/article/pii/S266616672300059X
Jan 2023
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Pyruvate kinase M2 mediates IL-17 signaling in keratinocytes driving psoriatic skin inflammation

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1. scibot 28 Jan 2023
  
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  DOI: 10.1016/j.celrep.2022.111897
  
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  DOI: 10.1016/j.celrep.2022.111897
  
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sciencedirect.com/science/article/pii/S221112472201796X
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Acute COG inactivation unveiled its immediate impact on Golgi and illuminated the nature of intra-Golgi recycling vesicles

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onlinelibrary.wiley.com/doi/10.1111/tra.12876
Dec 2022
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Rapid COG Depletion in Mammalian Cell by Auxin-Inducible Degradation System

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  DOI: 10.1007/978-1-0716-2639-9_23
  
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link.springer.com/protocol/10.1007/978-1-0716-2639-9_23
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CEACAM1 is a direct SOX10 target and inhibits melanoma immune infiltration and stemness

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  DOI: 10.1016/j.isci.2022.105524
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9682343/
Nov 2022
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NF1 loss of function as an alternative initiating event in pancreatic ductal adenocarcinoma

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1. scibot 09 Nov 2022
  
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  DOI: 10.1016/j.celrep.2022.111623
  
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sciencedirect.com/science/article/pii/S2211124722014942
Oct 2022
currentprotocols.onlinelibrary.wiley.com currentprotocols.onlinelibrary.wiley.com

Imaging Inflammasome Activation in Microglia

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1. scibot 27 Oct 2022
  
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  DOI: 10.1002/cpz1.578
  
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currentprotocols.onlinelibrary.wiley.com/doi/10.1002/cpz1.578
Aug 2022
www.nature.com www.nature.com

Spatial multi-omic map of human myocardial infarction

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1. scibot 11 Aug 2022
  
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  DOI: 10.1038/s41586-022-05060-x
  
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nature.com/articles/s41586-022-05060-x
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Targeting interleukin 4 receptor alpha on tumor-associated macrophages reduces the pro-tumor macrophage phenotype

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1. scibot 10 Aug 2022
  
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  RRID:Addgene_8449
  
  DOI: 10.1016/j.neo.2022.100830
  
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sciencedirect.com/science/article/pii/S1476558622000574
Apr 2022
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The interferon-stimulated gene RIPK1 regulates cancer cell intrinsic and extrinsic resistance to immune checkpoint blockade

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1. scibot 13 Apr 2022
  
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  RRID:Addgene_8449
  
  DOI: 10.1016/j.immuni.2022.03.007
  
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sciencedirect.com/science/article/pii/S1074761322001303
Mar 2022
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MLL::AF9 degradation induces rapid changes in transcriptional elongation and subsequent loss of an active chromatin landscape

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1. scibot 04 Mar 2022
  
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  Plasmid_8449
  
  DOI: 10.1016/j.molcel.2022.02.013
  
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sciencedirect.com/science/article/pii/S1097276522001186
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YAP regulates an SGK1/mTORC1/SREBP-dependent lipogenic program to support proliferation and tissue growth

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1. scibot 02 Mar 2022
  
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  Addgene8449
  
  DOI: 10.1016/j.devcel.2022.02.004
  
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  DOI: 10.1016/j.devcel.2022.02.004
  
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sciencedirect.com/science/article/pii/S1534580722000703
Jan 2022
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SNX9-induced membrane tubulation regulates CD28 cluster stability and signalling

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1. scibot 28 Jan 2022
  
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  RRID:Addgene_8449
  
  DOI: 10.7554/eLife.67550
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8786313/
Nov 2021
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Chromatin-accessibility estimation from single-cell ATAC-seq data with scOpen

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1. scibot 11 Nov 2021
  
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  DOI: 10.1038/s41467-021-26530-2
  
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nature.com/articles/s41467-021-26530-2
Aug 2021
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Derivation of iPSC lines from two idiopathic ASD patients (OFi001-A, OFi002-A)

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1. scibot 20 Aug 2021
  
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  DOI: 10.1016/j.scr.2021.102510
  
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sciencedirect.com/science/article/pii/S1873506121003573
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The biochemical basis of mitochondrial dysfunction in Zellweger Spectrum Disorder

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1. scibot 15 Aug 2021
  
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  RRID:Addgene_8449
  
  DOI: 10.15252/embr.202051991
  
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embopress.org/doi/full/10.15252/embr.202051991
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Untitled document

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1. scibot 05 Aug 2021
  
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  DOI: 10.1016/j.cell.2018.11.038
  
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sciencedirect.com/science/article/pii/S0092867418315630
May 2021
onlinelibrary.wiley.com onlinelibrary.wiley.com

Adult-born granule cell mossy fibers preferentially target parvalbumin-positive interneurons surrounded by perineuronal nets

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1. scibot 20 May 2021
  
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  DOI: 10.1002/hipo.23296
  
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onlinelibrary.wiley.com/doi/10.1002/hipo.23296
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The oncogenic E3 ligase TRIP12 suppresses epithelial–mesenchymal transition (EMT) and mesenchymal traits through ZEB1/2

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1. scibot 12 May 2021
  
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  DOI: 10.1038/s41420-021-00479-z
  
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nature.com/articles/s41420-021-00479-z
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Genome-wide Screens Identify Lineage- and Tumor-Specific Genes Modulating MHC-I- and MHC-II-Restricted Immunosurveillance of Human Lymphomas

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1. scibot 07 May 2021
  
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  Addgene_8449
  
  DOI: 10.1016/j.immuni.2020.11.002
  
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Activation of adenosine A3 receptors regulates vitamin C transport and redox balance in neurons

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1. scibot 06 May 2021
  
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  DOI: 10.1016/j.freeradbiomed.2020.11.039
  
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An Excitable Ras/PI3K/ERK Signaling Network Controls Migration and Oncogenic Transformation in Epithelial Cells

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1. scibot 05 May 2021
  
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  Plasmid_8449
  
  DOI: 10.1016/j.devcel.2020.08.001
  
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sciencedirect.com/science/article/pii/S1534580720305992
Apr 2021
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SETD5-Coordinated Chromatin Reprogramming Regulates Adaptive Resistance to Targeted Pancreatic Cancer Therapy

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1. scibot 17 Apr 2021
  
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  DOI: 10.1016/j.ccell.2020.04.014
  
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sciencedirect.com/science/article/pii/S1535610820302130
Sep 2020
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

A Replication-Competent Vesicular Stomatitis Virus for Studies of SARS-CoV-2 Spike-Mediated Cell Entry and Its Inhibition

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1. scibot 23 Sep 2020
  
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  plasmid_8449
  
  DOI: 10.1016/j.chom.2020.06.020
  
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Generation of a human iPSC line (MPIi007-A) from a patient with Metachromatic leukodystrophy

1
1. scibot 15 Sep 2020
  
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  pUMVC
  
  DOI: 10.1016/j.scr.2020.101993
  
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Microglia Dysfunction Caused by the Loss of Rhoa Disrupts Neuronal Physiology and Leads to Neurodegeneration

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1. scibot 03 Sep 2020
  
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  DOI: 10.1016/j.celrep.2020.107796
  
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sciencedirect.com/science/article/pii/S2211124720307774
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Generation of two iPS cell lines (HIHDNDi001-A and HIHDNDi001-B) from a Parkinson’s disease patient carrying the heterozygous p.A30P mutation in SNCA

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1. scibot 03 Sep 2020
  
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  Addgene #8449
  
  DOI: 10.1016/j.scr.2020.101951
  
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