60 Matching Annotations
  1. Jul 2026
  2. www.biorxiv.org www.biorxiv.org
    High-fidelity rare structural variant detection with HiFiRE3 reduced representation via restriction enzyme ends
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    biorxiv.org/content/10.64898/2026.06.24.734375v1
  3. May 2026
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    CREsted: modeling genomic and synthetic cell-type-specific enhancers across tissues and species
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    pmc.ncbi.nlm.nih.gov/articles/PMC13167471/
  5. Apr 2026
  6. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    LINE-1 Locus Transcription Nucleates Oncogenic Chromatin Architecture
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    pmc.ncbi.nlm.nih.gov/articles/PMC13040219/
  7. www.biorxiv.org www.biorxiv.org
    Modeling cis-regulatory variation in human brain enhancers across a large Parkinson’s Disease cohort
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    biorxiv.org/content/10.64898/2026.03.15.711881v1
  8. Mar 2026
  9. advanced.onlinelibrary.wiley.com advanced.onlinelibrary.wiley.com
    PRELID1 and VDAC3 Coordinate a Senescence-Like State in Germinal Center B Cells to Promote IL-7–Driven Antitumor Immunity in Colorectal Cancer
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    advanced.onlinelibrary.wiley.com/doi/10.1002/advs.202521951
  10. Jan 2026
  11. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Extrachromosomal microDNA Signature as Candidate Biomarker in Pediatric Acute Lymphoblastic Leukemia
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    pmc.ncbi.nlm.nih.gov/articles/PMC12813666/
  12. www.nature.com www.nature.com
    Single-nucleus chromatin accessibility and gene expression co-profiling by ISSAAC-seq
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    nature.com/articles/s41596-025-01304-y
  13. Nov 2025
  14. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Molecular Characterization of Polyomavirus-Positive and Negative Merkel Cell Carcinoma
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    pmc.ncbi.nlm.nih.gov/articles/PMC12609552/
  15. Oct 2025
  16. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Novel MAML2 Fusions in Human Malignancy
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    pmc.ncbi.nlm.nih.gov/articles/PMC12524005/
  17. Sep 2025
  18. www.biorxiv.org www.biorxiv.org
    The multiscale distribution of radiation-induced DNA damage and its impact on local genome structure
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    biorxiv.org/content/10.1101/2025.08.25.672161v1
  19. Jul 2025
  20. www.sciencedirect.com www.sciencedirect.com
    Scalable screening of ternary-code DNA methylation dynamics associated with human traits
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    sciencedirect.com/science/article/pii/S2666979X25001855
  21. Jun 2025
  22. www.nature.com www.nature.com
    Reconstruction of diploid higher-order human 3D genome interactions from noisy Pore-C data using Dip3D
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    nature.com/articles/s41594-025-01512-w
  23. Dec 2024
  24. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Mapping protein–DNA interactions with DiMeLo-seq
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    pmc.ncbi.nlm.nih.gov/articles/PMC11674881/
  25. Nov 2024
  26. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Replication stress induces POLQ-mediated structural variant formation throughout common fragile sites after entry into mitosis
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    pmc.ncbi.nlm.nih.gov/articles/PMC11541566/
  27. Sep 2024
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SJPedPanel: A pan-cancer gene panel for childhood malignancies to enhance cancer monitoring and early detection
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    ncbi.nlm.nih.gov/pmc/articles/PMC11393547/
  29. Jul 2024
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An eQTL-based approach reveals candidate regulators of LINE-1 RNA levels in lymphoblastoid cells
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    ncbi.nlm.nih.gov/pmc/articles/PMC11189215/
  31. Jun 2024
  32. www.biorxiv.org www.biorxiv.org
    POLQ mediates replication-stress induced structural variant formation throughout common fragile sites during mitosis
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    biorxiv.org/content/10.1101/2024.05.28.596214v1
  33. Apr 2024
  34. www.sciencedirect.com www.sciencedirect.com
    Human gene regulatory evolution is driven by the divergence of regulatory element function in both cis and trans
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    sciencedirect.com/science/article/pii/S2666979X24000922
  35. Sep 2023
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Inferring causal genes at type 2 diabetes GWAS loci through chromosome interactions in islet cells
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    ncbi.nlm.nih.gov/pmc/articles/PMC10509606/
  37. Aug 2023
  38. www.biorxiv.org www.biorxiv.org
    A Computational Approach for the Identification of Novel L1 Transcriptional Regulators
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    biorxiv.org/content/10.1101/2023.08.15.553416v1
  39. www.biorxiv.org www.biorxiv.org
    Single-cell somatic copy number variants in brain using different amplification methods and reference genomes
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    biorxiv.org/content/10.1101/2023.08.07.552289v1
  40. Jun 2023
  41. www.nature.com www.nature.com
    Chromatin alternates between A and B compartments at kilobase scale for subgenic organization
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    nature.com/articles/s41467-023-38429-1
  42. Dec 2022
  43. www.sciencedirect.com www.sciencedirect.com
    Parent-of-origin detection and chromosome-scale haplotyping using long-read DNA methylation sequencing and Strand-seq
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    sciencedirect.com/science/article/pii/S2666979X22001914
  44. Jun 2022
  45. www.nature.com www.nature.com
    Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing
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    nature.com/articles/s41587-022-01289-z
  46. Apr 2022
  47. www.sciencedirect.com www.sciencedirect.com
    Benchmarking challenging small variants with linked and long reads
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    sciencedirect.com/science/article/pii/S2666979X2200057X
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrating transcription-factor abundance with chromatin accessibility in human erythroid lineage commitment
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    ncbi.nlm.nih.gov/pmc/articles/PMC9017139/
  49. Feb 2022
  50. www.sciencedirect.com www.sciencedirect.com
    HiCAR is a robust and sensitive method to analyze open-chromatin-associated genome organization
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    sciencedirect.com/science/article/pii/S1097276522000983
  51. www.sciencedirect.com www.sciencedirect.com
    Gene architecture directs splicing outcome in separate nuclear spatial regions
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    sciencedirect.com/science/article/pii/S109727652200106X
  52. www.nature.com www.nature.com
    Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture
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    nature.com/articles/s41596-021-00651-w
  53. Jan 2022
  54. www.sciencedirect.com www.sciencedirect.com
    Construction of Strand-seq libraries in open nanoliter arrays
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    sciencedirect.com/science/article/pii/S2667237521002277
  55. www.nature.com www.nature.com
    SPRITE: a genome-wide method for mapping higher-order 3D interactions in the nucleus using combinatorial split-and-pool barcoding
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    nature.com/articles/s41596-021-00633-y
  56. Oct 2021
  57. www.nature.com www.nature.com
    Scalable dual-omics profiling with single-nucleus chromatin accessibility and mRNA expression sequencing 2 (SNARE-seq2)
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    nature.com/articles/s41596-021-00507-3
  58. Aug 2021
  59. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    ncbi.nlm.nih.gov/pmc/articles/PMC5467036/
  60. academic.oup.com academic.oup.com
    A reference human genome dataset of the BGISEQ-500 sequencer
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    academic.oup.com/gigascience/article/6/5/gix024/3098240
  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    ncbi.nlm.nih.gov/pmc/articles/PMC5487215/
  62. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    ncbi.nlm.nih.gov/pmc/articles/PMC5097419/
  63. www.sciencedirect.com www.sciencedirect.com
    Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF
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    sciencedirect.com/science/article/pii/S2405471219301929
  64. Jul 2021
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Continuous-trait probabilistic model for comparing multi-species functional genomic data
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    ncbi.nlm.nih.gov/pmc/articles/PMC6107375/
  66. link.springer.com link.springer.com
    BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing
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    link.springer.com/article/10.1186/s13059-019-1671-x
  67. May 2021
  68. www.sciencedirect.com www.sciencedirect.com
    Enhancer viruses for combinatorial cell-subclass-specific labeling
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    sciencedirect.com/science/article/pii/S0896627321001598
  69. www.sciencedirect.com www.sciencedirect.com
    Novel target capture DNA library preparation method using CircLigase-mediated hook ligation
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    sciencedirect.com/science/article/pii/S1871678420301540
  70. Feb 2021
  71. academic.oup.com academic.oup.com
    Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?
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    academic.oup.com/gigascience/article/9/1/giz158/5695848
  72. elifesciences.org elifesciences.org
    Single-cell RNA-seq reveals transcriptomic heterogeneity mediated by host–pathogen dynamics in lymphoblastoid cell lines
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    elifesciences.org/articles/62586
  73. Dec 2020
  74. www.nature.com www.nature.com
    Efficient hybrid de novo assembly of human genomes with WENGAN
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    nature.com/articles/s41587-020-00747-w
  75. Sep 2020
  76. www.sciencedirect.com www.sciencedirect.com
    Cell Type-Specific Intralocus Interactions Reveal Oligodendrocyte Mechanisms in MS
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    sciencedirect.com/science/article/pii/S0092867420302646
  77. academic.oup.com academic.oup.com
    TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads
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    academic.oup.com/gigascience/article/9/9/giaa094/5902284
  78. www.sciencedirect.com www.sciencedirect.com
    MATCHA: Probing Multi-way Chromatin Interaction with Hypergraph Representation Learning
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    sciencedirect.com/science/article/pii/S2405471220301472
  79. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Multi‐omics analysis reveals the functional transcription and potential translation of enhancers
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    onlinelibrary.wiley.com/doi/10.1002/ijc.33132
  80. Jan 2020
  81. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Assessment of human diploid genome assembly with 10x Linked-Reads data
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    ncbi.nlm.nih.gov/pmc/articles/PMC6879002/
  82. genomebiology.biomedcentral.com genomebiology.biomedcentral.com
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    genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1671-x
  83. Apr 2019
  84. academic.oup.com academic.oup.com
    16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model
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    academic.oup.com/gigascience/article-lookup/doi/10.1093/gigascience/gix045
  85. Nov 2018
  86. www.sciencedirect.com www.sciencedirect.com
    Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data
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    sciencedirect.com/science/article/pii/S2405471218302400
  87. www.sciencedirect.com www.sciencedirect.com
    The Epstein-Barr Virus Regulome in Lymphoblastoid Cells
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    sciencedirect.com/science/article/pii/S1931312817303554
  88. www.sciencedirect.com www.sciencedirect.com
    Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus
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    sciencedirect.com/science/article/pii/S0092867418306366
  89. www.sciencedirect.com www.sciencedirect.com
    CTCF-Mediated Chromatin Loops between Promoter and Gene Body Regulate Alternative Splicing across Individuals
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    sciencedirect.com/science/article/pii/S240547121730488X
  90. Nov 2017
  91. academic.oup.com academic.oup.com
    16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model
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    academic.oup.com/gigascience/article-lookup/doi/10.1093/gigascience/gix045
  92. elifesciences.org elifesciences.org
    Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
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    elifesciences.org/articles/23203
  93. academic.oup.com academic.oup.com
    A reference human genome dataset of the BGISEQ-500 sequencer
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    academic.oup.com/gigascience/article/6/5/gix024/3098240
  94. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MYC activation and BCL2L11 silencing by a tumour virus through the large-scale reconfiguration of enhancer-promoter hubs
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    ncbi.nlm.nih.gov/pmc/articles/PMC5005034/