45 Matching Annotations
  1. May 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Widespread impact of nucleosome remodelers on transcription at cis-regulatory elements
    1
    1. scibot 04 May 2024
      RRID:CVCL_9108110

      DOI: 10.1101/2024.04.12.589208

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC11042195/
  3. Apr 2024
  4. www.sciencedirect.com www.sciencedirect.com
    Mannose controls mesoderm specification and symmetry breaking in mouse gastruloids
    1
    1. scibot 18 Apr 2024
      RRID:CVCL_9108

      DOI: 10.1016/j.devcel.2024.03.031

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

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    sciencedirect.com/science/article/pii/S1534580724001989
  5. www.sciencedirect.com www.sciencedirect.com
    Enhancer switching in cell lineage priming is linked to eRNA, Brg1’s AT-hook, and SWI/SNF recruitment
    1
    1. scibot 09 Apr 2024
      cat#CRL-1821

      DOI: 10.1016/j.molcel.2024.03.013

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @abever99

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    sciencedirect.com/science/article/pii/S1097276524002235
  6. Feb 2024
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Modulation of neuronal activity in cortical organoids with bioelectronic delivery of ions and neurotransmitters
    1
    1. scibot 03 Feb 2024
      ATCC CRL-1821

      DOI: 10.1016/j.crmeth.2023.100686

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC10831944/
  8. Jan 2024
  9. link.springer.com link.springer.com
    Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet
    1
    1. scibot 11 Jan 2024
      RRID:CVCL_9108

      DOI: 10.1186/s13059-023-03070-0

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

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    link.springer.com/article/10.1186/s13059-023-03070-0
  10. Dec 2023
  11. www.sciencedirect.com www.sciencedirect.com
    One-pot trimodal mapping of unmethylated, hydroxymethylated, and open chromatin sites unveils distinctive 5hmC roles at dynamic chromatin loci
    1
    1. scibot 29 Dec 2023
      RRID:CVCL_9108

      DOI: 10.1016/j.chembiol.2023.12.003

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

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    sciencedirect.com/science/article/pii/S2451945623004336
  12. Nov 2023
  13. link.springer.com link.springer.com
    BID-seq for transcriptome-wide quantitative sequencing of mRNA pseudouridine at base resolution
    1
    1. scibot 18 Nov 2023
      RRID:CVCL_9108

      DOI: 10.1038/s41596-023-00917-5

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

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    link.springer.com/article/10.1038/s41596-023-00917-5
  14. Oct 2023
  15. www.sciencedirect.com www.sciencedirect.com
    Dual agonistic and antagonistic roles of ZC3H18 provide for co-activation of distinct nuclear RNA decay pathways
    1
    1. scibot 28 Oct 2023
      RRID:CVCL_9108

      DOI: 10.1016/j.celrep.2023.113325

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

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    sciencedirect.com/science/article/pii/S2211124723013372
  16. May 2023
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing
    1
    1. scibot 09 May 2023
      RRID:CVCL_9108

      DOI: 10.1038/s41467-023-38324-9

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

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    ncbi.nlm.nih.gov/pmc/articles/PMC10164132/
  18. Apr 2023
  19. link.springer.com link.springer.com
    The esBAF and ISWI nucleosome remodeling complexes influence occupancy of overlapping dinucleosomes and fragile nucleosomes in murine embryonic stem cells
    1
    1. scibot 18 Apr 2023
      RRID:CVCL_9108

      DOI: 10.1186/s12864-023-09287-4

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

      SciCrunch record: RRID:CVCL_9108

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    link.springer.com/article/10.1186/s12864-023-09287-4
  20. Dec 2022
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Using BODIPY FL-Sphingolipid Analogs to Study Sphingolipid Metabolism in Mouse Embryonic Stem Cells
    1
    1. scibot 31 Dec 2022
      CVCL_9108

      DOI: 10.21769/BioProtoc.4555

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @evieth

      SciCrunch record: RRID:CVCL_9108

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      RRID:CVCL_9108
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    ncbi.nlm.nih.gov/pmc/articles/PMC9724015/
  22. link.springer.com link.springer.com
    LINE-1 Retrotransposition Assays in Embryonic Stem Cells
    1
    1. scibot 06 Dec 2022
      RRID:CVCL_9108

      DOI: 10.1007/978-1-0716-2883-6_13

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @sofiakhan13

      SciCrunch record: RRID:CVCL_9108

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      RRID:CVCL_9108
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    link.springer.com/protocol/10.1007/978-1-0716-2883-6_13
  23. Oct 2022
  24. www.sciencedirect.com www.sciencedirect.com
    A brain atlas of synapse protein lifetime across the mouse lifespan
    1
    1. scibot 06 Oct 2022
      08021401

      DOI: 10.1016/j.neuron.2022.09.009

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @a5munoz

      SciCrunch record: RRID:CVCL_9108

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      RRID:CVCL_9108
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    sciencedirect.com/science/article/pii/S0896627322008145
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Efficient and reversible Cas13d-mediated knockdown with an all-in-one lentivirus-vector
    1
    1. scibot 01 Oct 2022
      RRID:CVCL_9108

      DOI: 10.3389/fbioe.2022.960192

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

      SciCrunch record: RRID:CVCL_9108

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      RRID:CVCL_9108
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    ncbi.nlm.nih.gov/pmc/articles/PMC9521038/
  26. Jul 2022
  27. www.sciencedirect.com www.sciencedirect.com
    An automated do-it-yourself system for dynamic stem cell and organoid culture in standard multi-well plates
    1
    1. scibot 02 Jul 2022
      RRID:CVCL_9108

      DOI: 10.1016/j.crmeth.2022.100244

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

      SciCrunch record: RRID:CVCL_9108

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    sciencedirect.com/science/article/pii/S2667237522001138
  28. Jun 2022
  29. www.sciencedirect.com www.sciencedirect.com
    A TRIM66/DAX1/Dux axis suppresses the totipotent 2-cell-like state in murine embryonic stem cells
    1
    1. scibot 03 Jun 2022
      ATCCCat# CRL-1821

      DOI: 10.1016/j.stem.2022.05.004

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @sophiastull

      SciCrunch record: RRID:CVCL_9108

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    sciencedirect.com/science/article/pii/S1934590922002041
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Covariation of Pluripotency Markers and Biomechanical Properties in Mouse Embryonic Stem Cells
    1
    1. scibot 01 Jun 2022
      RRID:CVCL_9108

      DOI: 10.3389/fcell.2022.858884

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

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      RRID:CVCL_9108
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    ncbi.nlm.nih.gov/pmc/articles/PMC9149596/
  31. Apr 2022
  32. www.sciencedirect.com www.sciencedirect.com
    Heterochromatic repeat clustering imposes a physical barrier on homologous recombination to prevent chromosomal translocations
    1
    1. scibot 21 Apr 2022
      ATCCCRL-1821

      DOI: 10.1016/j.molcel.2022.03.033

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @sophiastull

      SciCrunch record: RRID:CVCL_9108

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      RRID:CVCL_9108
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    sciencedirect.com/science/article/pii/S1097276522002891
  33. www.sciencedirect.com www.sciencedirect.com
    CTCF functions as an insulator for somatic genes and a chromatin remodeler for pluripotency genes during reprogramming
    1
    1. scibot 07 Apr 2022
      ATCCCRL-1821

      DOI: 10.1016/j.celrep.2022.110626

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @sophiastull

      SciCrunch record: RRID:CVCL_9108

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      RRID:CVCL_9108
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    sciencedirect.com/science/article/pii/S2211124722003746
  34. www.sciencedirect.com www.sciencedirect.com
    Chromatin modifier HUSH co-operates with RNA decay factor NEXT to restrict transposable element expression
    1
    1. scibot 01 Apr 2022
      ATCCCat# CRL-1821

      DOI: 10.1016/j.molcel.2022.03.004

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @sophiastull

      SciCrunch record: RRID:CVCL_9108

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      RRID:CVCL_9108
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    sciencedirect.com/science/article/pii/S1097276522002131
  35. Jan 2022
  36. www.nature.com www.nature.com
    KAS-seq: genome-wide sequencing of single-stranded DNA by N3-kethoxal–assisted labeling
    1
    1. scibot 15 Jan 2022
      RRID:CVCL_9108

      DOI: 10.1038/s41596-021-00647-6

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

      SciCrunch record: RRID:CVCL_9108

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      RRID:CVCL_9108
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    nature.com/articles/s41596-021-00647-6
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    CRISPR-Mediated Knockout of Long 3′ UTR mRNA Isoforms in mESC-Derived Neurons
    1
    1. scibot 05 Jan 2022
      RRID:CVCL_9108

      DOI: 10.3389/fgene.2021.789434

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

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      RRID:CVCL_9108
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    ncbi.nlm.nih.gov/pmc/articles/PMC8718760/
  38. Nov 2021
  39. www.sciencedirect.com www.sciencedirect.com
    Molecular and functional architecture of striatal dopamine release sites
    1
    1. scibot 12 Nov 2021
      RRID:CVCL_9108

      DOI: 10.1016/j.neuron.2021.10.028

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

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    sciencedirect.com/science/article/pii/S0896627321008436
  40. Oct 2021
  41. www.nature.com www.nature.com
    Capture of the newly transcribed RNA interactome using click chemistry
    1
    1. scibot 29 Oct 2021
      RRID:CVCL_9108

      DOI: 10.1038/s41596-021-00609-y

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

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    nature.com/articles/s41596-021-00609-y
  42. www.sciencedirect.com www.sciencedirect.com
    Interactome analysis reveals endocytosis and membrane recycling of EpCAM during differentiation of embryonic stem cells and carcinoma cells
    1
    1. scibot 09 Oct 2021
      RRID:CVCL_9108

      DOI: 10.1016/j.isci.2021.103179

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

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      RRID:CVCL_9108
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    sciencedirect.com/science/article/pii/S2589004221011470
  43. Aug 2021
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 11 Aug 2021
      RRID:CVCL_9108

      DOI: 10.1016/j.stem.2017.09.004

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

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      RRID:CVCL_9108
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    ncbi.nlm.nih.gov/pmc/articles/PMC5658514/
  45. www.nature.com www.nature.com
    A plate-based single-cell ATAC-seq workflow for fast and robust profiling of chromatin accessibility
    1
    1. scibot 03 Aug 2021
      RRID:CVCL_9108

      DOI: 10.1038/s41596-021-00583-5

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

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    nature.com/articles/s41596-021-00583-5
  46. Jul 2021
  47. elifesciences.org elifesciences.org
    NEIL1 and NEIL2 DNA glycosylases protect neural crest development against mitochondrial oxidative stress
    1
    1. scibot 30 Jul 2021
      E14TG2a

      DOI: 10.7554/eLife.49044

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @Naa003

      SciCrunch record: RRID:CVCL_9108

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      RRIDCUR:Missing RRID:CVCL_9108
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    elifesciences.org/articles/49044
  48. Jun 2021
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SIRT1 regulates sphingolipid metabolism and neural differentiation of mouse embryonic stem cells through c-Myc-SMPDL3B
    1
    1. scibot 26 Jun 2021
      RRID:CVCL_9108

      DOI: 10.7554/eLife.67452

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

      SciCrunch record: RRID:CVCL_9108

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      RRID:CVCL_9108
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    ncbi.nlm.nih.gov/pmc/articles/PMC8216717/
  50. www.nature.com www.nature.com
    Construction of a mammalian embryo model from stem cells organized by a morphogen signalling centre
    1
    1. scibot 05 Jun 2021
      CRL-1821

      DOI: 10.1038/s41467-021-23653-4

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @Naa003

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      RRIDCUR:Missing RRID:CVCL_9108
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    nature.com/articles/s41467-021-23653-4
  51. May 2021
  52. www.nature.com www.nature.com
    Transcription factor chromatin profiling genome-wide using uliCUT&RUN in single cells and individual blastocysts
    1
    1. scibot 05 May 2021
      RRID:CVCL_9108

      DOI: 10.1038/s41596-021-00516-2

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @scibot

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      RRID:CVCL_9108
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    nature.com/articles/s41596-021-00516-2
  53. Apr 2021
  54. www.sciencedirect.com www.sciencedirect.com
    Protocol for RNA-seq library preparation starting from a rare muscle stem cell population or a limited number of mouse embryonic stem cells
    1
    1. scibot 20 Apr 2021
      CRL-1821

      DOI: 10.1016/j.xpro.2021.100451

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @Naa003

      SciCrunch record: RRID:CVCL_9108

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      RRID:CVCL_9108 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S2666166721001581
  55. Feb 2021
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic innovation of ATD alleviates mistranslation associated with multicellularity in Animalia
    1
    1. scibot 25 Feb 2021
      RRID:CVCL_9108

      DOI: 10.7554/eLife.58118

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

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    ncbi.nlm.nih.gov/pmc/articles/PMC7302879/
  57. Nov 2020
  58. www.sciencedirect.com www.sciencedirect.com
    Essentiality of CENP-A Depends on Its Binding Mode to HJURP
    1
    1. scibot 26 Nov 2020
      RRID:CVCL_9108

      DOI: 10.1016/j.celrep.2020.108388

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @Naa003

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      RRIDCUR:Validated RRID:CVCL_9108
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    sciencedirect.com/science/article/pii/S2211124720313772
  59. www.sciencedirect.com www.sciencedirect.com
    Defining Essential Enhancers for Pluripotent Stem Cells Using a Features-Oriented CRISPR-Cas9 Screen
    1
    1. scibot 05 Nov 2020
      ES-E14

      DOI: 10.1016/j.celrep.2020.108309

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @Naa003

      SciCrunch record: RRID:CVCL_9108

      Curator comments: ES-E14TG2a cell line ATCC Cat# CRL-1821

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      RRIDCUR:Missing RRID:CVCL_9108
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    sciencedirect.com/science/article/pii/S2211124720312985
  60. Oct 2020
  61. www.sciencedirect.com www.sciencedirect.com
    In Vitro Derivation of Quiescent Mouse Embryonic Stem Cells Based on Distinct Mitochondrial Activity
    1
    1. scibot 24 Oct 2020
      E14tg2a

      DOI: 10.1016/j.xpro.2020.100136

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @Naa003

      SciCrunch record: RRID:CVCL_9108

      Curator comments: ES-E14TG2a cell line ATCC Cat# CRL-1821

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      RRIDCUR:Missing RRID:CVCL_9108
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    sciencedirect.com/science/article/pii/S2666166720301234
  62. Sep 2020
  63. www.sciencedirect.com www.sciencedirect.com
    Distinct Processing of lncRNAs Contributes to Non-conserved Functions in Stem Cells
    1
    1. scibot 04 Sep 2020
      E14

      DOI: 10.1016/j.cell.2020.03.006

      Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)

      Curator: @ethanbadger

      SciCrunch record: RRID:CVCL_9108

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      RRIDCUR:Missing RRID:CVCL_9108
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    sciencedirect.com/science/article/pii/S0092867420302683
  64. Nov 2018
  65. www.sciencedirect.com www.sciencedirect.com
    CRISPR Activation Screens Systematically Identify Factors that Drive Neuronal Fate and Reprogramming
    1
    1. scibot 05 Nov 2018
      RRID:CVCL_9108

      Curator: @Jmenke

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      (BCRC Cat# 60206, RRID:CVCL_9108)

      SciCrunch record: RRID:CVCL_9108

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:CVCL_9108 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S1934590918304405
  66. www.sciencedirect.com www.sciencedirect.com
    Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate
    1
    1. scibot 05 Nov 2018
      RRID:CVCL_9108

      Curator: @Jmenke

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      (BCRC Cat# 60206, RRID:CVCL_9108)

      SciCrunch record: RRID:CVCL_9108

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:CVCL_9108 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S1934590918304016
  67. www.sciencedirect.com www.sciencedirect.com
    Capturing the Onset of PRC2-Mediated Repressive Domain Formation
    1
    1. scibot 05 Nov 2018
      CRL-1821

      Curator: @Jmenke

      Resource used:

      (BCRC Cat# 60206, RRID:CVCL_9108)

      SciCrunch record: RRID:CVCL_9108

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:CVCL_9108 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S1097276518303976
  68. www.sciencedirect.com www.sciencedirect.com
    Distinct Stimulatory Mechanisms Regulate the Catalytic Activity of Polycomb Repressive Complex 2
    1
    1. scibot 05 Nov 2018
      CRL-1821

      Curator: @Jmenke

      Resource used:

      (BCRC Cat# 60206, RRID:CVCL_9108)

      SciCrunch record: RRID:CVCL_9108

      Alternate resolvers: SciCrunch xml N2T identifiers.org

      What is this?

      RRID:CVCL_9108 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S1097276518302223
  69. www.sciencedirect.com www.sciencedirect.com
    Distinct Cell-Cycle Control in Two Different States of Mouse Pluripotency
    1
    1. scibot 05 Nov 2018
      RRID:CVCL_9108

      Curator: @evieth

      Resource used:

      (BCRC Cat# 60206, RRID:CVCL_9108)

      SciCrunch record: RRID:CVCL_9108

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:CVCL_9108 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S1934590917303715
  70. Nov 2017
  71. elifesciences.org elifesciences.org
    Mobilization of LINE-1 retrotransposons is restricted by Tex19.1 in mouse embryonic stem cells
    1
    1. scibot 08 Nov 2017
      RRID:CVCL_9108

      Curator: @kaitlinsung

      Resource used:

      (BCRC Cat# 60206, RRID:CVCL_9108)

      SciCrunch record: RRID:CVCL_9108

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:CVCL_9108 RRIDCUR:Validated
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    elifesciences.org/articles/26152
  72. www.sciencedirect.com www.sciencedirect.com
    Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation
    1
    1. scibot 08 Nov 2017
      CRL1821

      Curator: @Jmenke

      Resource used:

      (BCRC Cat# 60206, RRID:CVCL_9108)

      SciCrunch record: RRID:CVCL_9108

      Alternate resolvers: SciCrunch xml N2T identifiers.org

      What is this?

      RRID:CVCL_9108 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S1097276517305075
  73. www.sciencedirect.com www.sciencedirect.com
    Delayed Accumulation of H3K27me3 on Nascent DNA Is Essential for Recruitment of Transcription Factors at Early Stages of Stem Cell Differentiation
    1
    1. scibot 08 Nov 2017
      CVCL_9108

      Curator: @kaitlinsung

      Resource used:

      (BCRC Cat# 60206, RRID:CVCL_9108)

      SciCrunch record: RRID:CVCL_9108

      Alternate resolvers: SciCrunch xml N2T identifiers.org

      What is this?

      RRID:CVCL_9108 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S1097276517301739