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Nov 2025
www.cell.com www.cell.com

Integrative analysis of single-neuron projectomes links connectome, transcriptome, and function in the mouse cortex

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1. scibot 27 Nov 2025
  
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  JAX:009613
  
  DOI: 10.1016/j.neuron.2025.10.019
  
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cell.com/neuron/fulltext/S0896-6273(25)00800-1
Sep 2025
www.biorxiv.org www.biorxiv.org

CS - plasticity and behavioral-state integration in the posterior insula during auditory fear learning

1
1. scibot 30 Sep 2025
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1101/2025.09.25.678609
  
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biorxiv.org/content/10.1101/2025.09.25.678609v1
Feb 2025
www.jneurosci.org www.jneurosci.org

Pre- and postsynaptic MEF2C promote experience-dependent, input-specific development of cortical Layer 4 to Layer 2/3 excitatory synapses and regulate activity-dependent expression of synaptic cell adhesion molecules

1
1. scibot 27 Feb 2025
  
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  JAX:009613
  
  DOI: 10.1523/JNEUROSCI.0098-24.2024
  
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jneurosci.org/content/44/45/e0098242024
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A posterior insula to lateral amygdala pathway transmits US-offset information with a limited role in fear learning

1
1. scibot 20 Feb 2025
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.celrep.2025.115320
  
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sciencedirect.com/science/article/pii/S2211124725000919
Nov 2024
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

1
1. scibot 23 Nov 2024
  
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  009613
  
  DOI: 10.1038/nn.2467
  
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pmc.ncbi.nlm.nih.gov/articles/PMC2840225/
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Cortico-Thalamo-Cortical Circuits of Mouse Forelimb S1 Are Organized Primarily as Recurrent Loops

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1. scibot 14 Nov 2024
  
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  DOI: 10.1523/JNEUROSCI.2277-19.2020
  
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pmc.ncbi.nlm.nih.gov/articles/PMC7117898/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Cell class-specific long-range axonal projections of neurons in mouse whisker-related somatosensory cortices

1
1. scibot 08 Nov 2024
  
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  JAX:009613
  
  DOI: 10.7554/eLife.97602
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11469677/
Oct 2024
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Transcriptomic cell-type specificity of local cortical circuits

1
1. scibot 02 Oct 2024
  
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  JAX Stock No: 009613
  
  DOI: 10.1016/j.neuron.2024.09.003
  
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sciencedirect.com/science/article/pii/S0896627324006512
Sep 2024
elifesciences.org elifesciences.org

Cell class-specific long-range axonal projections of neurons in mouse whisker-related somatosensory cortices

1
1. scibot 28 Sep 2024
  
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  JAX:009613
  
  DOI: 10.7554/eLife.97602.2
  
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elifesciences.org/reviewed-preprints/97602
Apr 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Antipsychotic drugs selectively decorrelate long-range interactions in deep cortical layers

1
1. scibot 10 Apr 2024
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.7554/eLife.86805
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10997332/
Mar 2024
www.biorxiv.org www.biorxiv.org

Cell class-specific long-range axonal projections of neurons in mouse whisker-related somatosensory cortices

1
1. scibot 31 Mar 2024
  
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  JAX:009613
  
  DOI: 10.1101/2024.03.21.586078
  
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biorxiv.org/content/10.1101/2024.03.21.586078v1
Feb 2024
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Parallel pathways carrying direction-and orientation-selective retinal signals to layer 4 of the mouse visual cortex

1
1. scibot 29 Feb 2024
  
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  JAX Stock # 009613
  
  DOI: 10.1016/j.celrep.2024.113830
  
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  Curator: @mzhang007
  
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sciencedirect.com/science/article/pii/S221112472400158X
Jan 2024
www.biorxiv.org www.biorxiv.org

Cellular rules underlying psychedelic control of prefrontal pyramidal neurons

1
1. scibot 03 Jan 2024
  
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  009613
  
  DOI: 10.1101/2023.10.20.563334
  
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biorxiv.org/content/10.1101/2023.10.20.563334v1
www.nature.com www.nature.com

A direct spino-cortical circuit bypassing the thalamus modulates nociception

1
1. scibot 03 Jan 2024
  
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  JAX009613
  
  DOI: 10.1038/s41422-023-00832-0
  
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nature.com/articles/s41422-023-00832-0
academic.oup.com academic.oup.com

Layer 1 of somatosensory cortex: an important site for input to a tiny cortical compartment

1
1. scibot 02 Jan 2024
  
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  JAX:00961
  
  DOI: 10.1093/cercor/bhad371
  
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  RRIDCUR:Unresolved RRID:IMSR_JAX:009613 RRIDCUR:Incorrect
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academic.oup.com/cercor/article/33/23/11354/7320106
Apr 2023
www.sciencedirect.com www.sciencedirect.com

Narrowband gamma oscillations propagate and synchronize throughout the mouse thalamocortical visual system

2
1. scibot 06 Apr 2023
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2023.03.006
  
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  Curator: @sofiakhan13
  
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2. scibot 06 Apr 2023
  
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  JAX:009613
  
  DOI: 10.1016/j.neuron.2023.03.006
  
  Resource: (IMSR Cat# JAX_009613,RRID:IMSR_JAX:009613)
  
  Curator: @scibot
  
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sciencedirect.com/science/article/pii/S0896627323002027
Feb 2023
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Regional and cell-type-specific afferent and efferent projections of the mouse claustrum

1
1. scibot 17 Feb 2023
  
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  JAX:009613
  
  DOI: 10.1016/j.celrep.2023.112118
  
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sciencedirect.com/science/article/pii/S2211124723001298
Sep 2022
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Innate frequency-discrimination hyperacuity in Williams-Beuren syndrome mice

1
1. scibot 24 Sep 2022
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.cell.2022.08.022
  
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sciencedirect.com/science/article/pii/S0092867422011175
Jul 2022
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Intersectional mapping of multi-transmitter neurons and other cell types in the brain

1
1. scibot 09 Jul 2022
  
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  JAX:009613
  
  DOI: 10.1016/j.celrep.2022.111036
  
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sciencedirect.com/science/article/pii/S2211124722008300
Apr 2022
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General anesthesia globally synchronizes activity selectively in layer 5 cortical pyramidal neurons

1
1. scibot 22 Apr 2022
  
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  Jackson Labs009613
  
  DOI: 10.1016/j.neuron.2022.03.032
  
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  Curator: @sophiastull
  
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sciencedirect.com/science/article/pii/S0896627322003038
Feb 2022
elifesciences.org elifesciences.org

Synaptic connectivity to L2/3 of primary visual cortex measured by two-photon optogenetic stimulation

1
1. scibot 12 Feb 2022
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.7554/eLife.71103
  
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elifesciences.org/articles/71103
Nov 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Synthesis of a comprehensive population code for contextual features in the awake sensory cortex

1
1. scibot 24 Nov 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.7554/eLife.62687
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8598168/
Sep 2021
elifesciences.org elifesciences.org

Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization

1
1. scibot 18 Sep 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.7554/eLife.65482
  
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elifesciences.org/articles/65482
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Bottom-up inputs are required for establishment of top-down connectivity onto cortical layer 1 neurogliaform cells

1
1. scibot 03 Sep 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2021.08.004
  
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sciencedirect.com/science/article/pii/S0896627321005791
Aug 2021
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Spatial modulation of dark versus bright stimulus responses in the mouse visual system

1
1. scibot 14 Aug 2021
  
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  JAX:009613
  
  DOI: 10.1016/j.cub.2021.06.094
  
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sciencedirect.com/science/article/pii/S0960982221009465
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Distinct Circuits for Recovery of Eye Dominance and Acuity in Murine Amblyopia

1
1. scibot 14 Aug 2021
  
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  JAX:009613
  
  DOI: 10.1016/j.cub.2018.04.055
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6008222/
elifesciences.org elifesciences.org

Sensory experience inversely regulates feedforward and feedback excitation-inhibition ratio in rodent visual cortex

1
1. scibot 09 Aug 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.7554/eLife.38846
  
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elifesciences.org/articles/38846
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Untitled document

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1. scibot 09 Aug 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.7554/eLife.38846
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6224193/
Jul 2021
www.jneurosci.org www.jneurosci.org

Untitled document

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1. scibot 31 Jul 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1523/JNEUROSCI.0712-14.2014
  
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  Curator: @Naa003
  
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  RRID:IMSR_JAX:009613 RRIDCUR:Validated
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jneurosci.org/content/34/29/9537
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Untitled document

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1. scibot 29 Jul 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2018.07.018
  
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sciencedirect.com/science/article/pii/S0896627318305920
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Untitled document

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1. scibot 29 Jul 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2018.01.047
  
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  Curator: @evieth
  
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2. scibot 27 Jul 2021
  
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  JAX:00961
  
  DOI: 10.1016/j.neuron.2018.01.047
  
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  Curator: @evieth
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5873548/
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Activity-Dependent Downscaling of Subthreshold Synaptic Inputs during Slow-Wave-Sleep-like Activity In Vivo

1
1. scibot 29 Jul 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2018.01.047
  
  Resource: (IMSR Cat# JAX_009613,RRID:IMSR_JAX:009613)
  
  Curator: @evieth
  
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Biological variation in the sizes, shapes and locations of visual cortical areas in the mouse

1
1. scibot 28 Jul 2021
  
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  jax.org/strain/009613
  
  DOI: 10.1371/journal.pone.0213924
  
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A Critical Role of Presynaptic Cadherin/Catenin/p140Cap Complexes in Stabilizing Spines and Functional Synapses in the Neocortex

2
1. scibot 28 Jul 2021
  
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  IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2017.05.022
  
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2. scibot 28 Jul 2021
  
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  IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2017.05.022
  
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Natural Whisker-Guided Behavior by Head-Fixed Mice in Tactile Virtual Reality

1
1. scibot 27 Jul 2021
  
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  IMSR_JAX:009613
  
  DOI: 10.1523/JNEUROSCI.0712-14.2014
  
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ncbi.nlm.nih.gov/pmc/articles/PMC4099538/
Jun 2021
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Limited functional convergence of eye-specific inputs in the retinogeniculate pathway of the mouse

1
1. scibot 19 Jun 2021
  
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  JAX#009613
  
  DOI: 10.1016/j.neuron.2021.05.036
  
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A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

1
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  DOI: 10.1016/j.cell.2021.04.021
  
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Enhancer viruses for combinatorial cell-subclass-specific labeling

1
1. scibot 11 May 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2021.03.011
  
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A Disinhibitory Circuit for Contextual Modulation in Primary Visual Cortex

1
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2020.11.013
  
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Circuit organization of the excitatory sensorimotor loop through hand/forelimb S1 and M1

1
1. scibot 24 Apr 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.7554/eLife.66836
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8046433/
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Spatial integration during active tactile sensation drives orientation perception

1
1. scibot 09 Apr 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2021.03.020
  
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sciencedirect.com/science/article/pii/S0896627321001902
Feb 2021
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Activity labeling in vivo using CaMPARI2 reveals intrinsic and synaptic differences between neurons with high and low firing rate set points

1
1. scibot 28 Feb 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2020.11.027
  
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Layer 4 Gates Plasticity in Visual Cortex Independent of a Canonical Microcircuit

1
1. scibot 27 Feb 2021
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.cub.2020.05.067
  
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Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis

1
1. scibot 15 Jan 2021
  
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  JAX:009613
  
  DOI: 10.1016/j.celrep.2020.107648
  
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sciencedirect.com/science/article/pii/S221112472030601X
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Circuit Mechanisms Underlying Epileptogenesis in a Mouse Model of Focal Cortical Malformation

1
1. scibot 10 Dec 2020
  
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  Scnn1a-cre transgenic mouse
  
  DOI: 10.1016/j.cub.2020.10.029
  
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cell.com/current-biology/fulltext/S0960-9822(20)31533-5
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Extended field-of-view ultrathin microendoscopes for high-resolution two-photon imaging with minimal invasiveness

1
1. scibot 07 Dec 2020
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.7554/eLife.58882
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7685710/
Oct 2020
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Behavioral and Neural Bases of Tactile Shape Discrimination Learning in Head-Fixed Mice

1
1. scibot 01 Oct 2020
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2020.09.012
  
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sciencedirect.com/science/article/pii/S0896627320307121
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Pull-push neuromodulation of cortical plasticity enables rapid bi-directional shifts in ocular dominance

1
1. scibot 23 Sep 2020
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.7554/eLife.54455
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7239653/
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Modulation of Coordinated Activity across Cortical Layers by Plasticity of Inhibitory Synapses

1
1. scibot 16 Sep 2020
  
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  JAX:009613
  
  DOI: 10.1016/j.celrep.2019.12.052
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6988114/
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High-Accuracy Detection of Neuronal Ensemble Activity in Two-Photon Functional Microscopy Using Smart Line Scanning

1
1. scibot 14 Sep 2020
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.celrep.2020.01.105
  
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Opposing Somatic and Dendritic Expression of Stimulus-Selective Response Plasticity in Mouse Primary Visual Cortex

1
1. scibot 10 Sep 2020
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.3389/fncel.2019.00555
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6971207/
onlinelibrary.wiley.com onlinelibrary.wiley.com

Constant innervation despite pubertal growth of the mouse penis

1
1. scibot 04 Sep 2020
  
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  Scnn1a‐Tg3‐Cre
  
  DOI: 10.1002/cne.24892
  
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onlinelibrary.wiley.com/doi/10.1002/cne.24892
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Layer 6b Is Driven by Intracortical Long-Range Projection Neurons

1
1. scibot 03 Sep 2020
  
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  JAX Stock 009613
  
  DOI: 10.1016/j.celrep.2020.02.044
  
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sciencedirect.com/science/article/pii/S2211124720302059
Jan 2020
elifesciences.org elifesciences.org

Enrichment drives emergence of functional columns and improves sensory coding in the whisker map in L2/3 of mouse S1

1
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  RRID:IMSR_JAX:009613
  
  DOI: 10.7554/eLife.46321
  
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Mapping Brain-Wide Afferent Inputs of Parvalbumin-Expressing GABAergic Neurons in Barrel Cortex Reveals Local and Long-Range Circuit Motifs

1
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.celrep.2019.08.064
  
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sciencedirect.com/science/article/pii/S2211124719311192
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Multiple Morphological Factors Underlie Experience-Dependent Cross-Modal Plasticity in the Developing Sensory Cortices

1
1. scibot 13 Jan 2020
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1093/cercor/bhz248
  
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academic.oup.com/cercor/advance-article/doi/10.1093/cercor/bhz248/5673281
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Input-Specific Metaplasticity in the Visual Cortex Requires Homer1a-Mediated mGluR5 Signaling

1
1. scibot 13 Jan 2020
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.neuron.2019.08.017
  
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sciencedirect.com/science/article/pii/S0896627319307019
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Daily Oscillation of the Excitation-Inhibition Balance in Visual Cortical Circuits

1
1. scibot 13 Jan 2020
  
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  DOI: 10.1016/j.neuron.2019.11.011
  
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sciencedirect.com/science/article/pii/S0896627319309742
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Effects of Sexual Experience and Puberty on Mouse Genital Cortex revealed by Chronic Imaging

1
1. scibot 13 Jan 2020
  
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  RRID:IMSR_JAX:009613
  
  DOI: 10.1016/j.cub.2019.08.062
  
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sciencedirect.com/science/article/pii/S0960982219311121
Nov 2018
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Untitled document

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  JAX:009613
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6004823/
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Distinct Circuits for Recovery of Eye Dominance and Acuity in Murine Amblyopia

1
1. scibot 05 Nov 2018
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6008222/
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A Non-canonical Feedback Circuit for Rapid Interactions between Somatosensory Cortices

1
1. scibot 05 Nov 2018
  
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  JAX:009613
  
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sciencedirect.com/science/article/pii/S2211124718307150
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Untitled document

1
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  RRID:IMSR_JAX:009613
  
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  RRID:IMSR_JAX:009613 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:IMSR_JAX:009613

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scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC5873548/
www.sciencedirect.com www.sciencedirect.com

Activity-Dependent Downscaling of Subthreshold Synaptic Inputs during Slow-Wave-Sleep-like Activity In Vivo

2
1. scibot 05 Nov 2018
  
  in Public
  
  RRID: IMSR_JAX:009613
  
  Curator: @evieth
  
  Resource used:
  
  RRID:IMSR_JAX:009613
  Originally identified as: RRID: IMSR_JAX:009613
  
  SciCrunch record: RRID: IMSR_JAX:009613
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
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  RRID:IMSR_JAX:009613
2. scibot 05 Nov 2018
  
  in Public
  
  RRID:IMSR_JAX:009613
  
  Curator: @evieth
  
  Resource used:
  
  RRID:IMSR_JAX:009613
  
  SciCrunch record: RRID:IMSR_JAX:009613
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:IMSR_JAX:009613 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:IMSR_JAX:009613

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scibot

URL

sciencedirect.com/science/article/pii/S0896627318300722
Nov 2017
www.sciencedirect.com www.sciencedirect.com

A Sensorimotor Circuit in Mouse Cortex for Visual Flow Predictions

1
1. scibot 08 Nov 2017
  
  in Public
  
  RRID:IMSR_JAX:009613
  
  Curator: @Jmenke
  
  Resource used:
  
  RRID:IMSR_JAX:009613
  
  SciCrunch record: RRID:IMSR_JAX:009613
  
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  RRID:IMSR_JAX:009613 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:IMSR_JAX:009613

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scibot

URL

sciencedirect.com/science/article/pii/S0896627317307791
www.sciencedirect.com www.sciencedirect.com

Surround Integration Organizes a Spatial Map during Active Sensation

1
1. scibot 08 Nov 2017
  
  in Public
  
  B6;C3-Tg(Scnn1a-cre)3Aibs/JThe Jackson Laboratory009613
  
  Curator: @Jmenke
  
  Resource used:
  
  RRID:IMSR_JAX:009613
  
  SciCrunch record: RRID:IMSR_JAX:009613
  
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  RRID:IMSR_JAX:009613 RRIDCUR:Missing
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RRID:IMSR_JAX:009613

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scibot

URL

sciencedirect.com/science/article/pii/S0896627317303525
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Natural Whisker-Guided Behavior by Head-Fixed Mice in Tactile Virtual Reality

1
1. scibot 08 Nov 2017
  
  in Public
  
  IMSR_JAX:009613
  
  Resource used:
  
  RRID:IMSR_JAX:009613
  
  SciCrunch record: RRID:IMSR_JAX:009613
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
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  RRID:IMSR_JAX:009613 RRIDCUR:Unresolved
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RRIDCUR:Unresolved

RRID:IMSR_JAX:009613

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scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC4099538/