146 Matching Annotations
  1. Last 7 days
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Enhanced bovine genome annotation through integration of transcriptomics and epi-transcriptomics datasets facilitates genomic biology
    1
    1. scibot 20 Apr 2024
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giae019

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    ncbi.nlm.nih.gov/pmc/articles/PMC11020238/
  3. Jan 2024
  4. dx.doi.org dx.doi.org
    Reappraisal of the DNA phosphorothioate modification machinery: uncovering neglected functional modalities and identification of new counter-invader defense systems
    1
    1. scibot 06 Jan 2024
      RRID:SCR_001010

      DOI: 10.1093/nar/gkad1213

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    dx.doi.org/10.1093/nar/gkad1213
  5. Oct 2023
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Biosynthetic gene profiling and genomic potential of the novel photosynthetic marine bacterium Roseibaca domitiana
    1
    1. scibot 20 Oct 2023
      RRID:SCR_001010

      DOI: 10.3389/fmicb.2023.1238779

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    ncbi.nlm.nih.gov/pmc/articles/PMC10584327/
  7. Sep 2023
  8. www.nature.com www.nature.com
    Defining the condensate landscape of fusion oncoproteins
    1
    1. scibot 29 Sep 2023
      RRID:SCR_001010

      DOI: 10.1038/s41467-023-41655-2

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    nature.com/articles/s41467-023-41655-2
  9. www.sciencedirect.com www.sciencedirect.com
    Mechanism and evolutionary origins of alanine-tail C-degron recognition by E3 ligases Pirh2 and CRL2-KLHDC10
    1
    1. scibot 08 Sep 2023
      SCR_001010

      DOI: 10.1016/j.celrep.2023.113100

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    sciencedirect.com/science/article/pii/S2211124723011117
  10. Aug 2023
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Phylogeny-wide analysis of G-protein coupled receptors in social amoebas and implications for the evolution of multicellularity
    1
    1. scibot 31 Aug 2023
      RRID:SCR_001010

      DOI: 10.12688/openreseurope.15250.2

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    ncbi.nlm.nih.gov/pmc/articles/PMC10445921/
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome and recombination map of the male buffalo
    1
    1. scibot 26 Aug 2023
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giad063

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    ncbi.nlm.nih.gov/pmc/articles/PMC10433102/
  13. Jul 2023
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
    1
    1. scibot 25 Jul 2023
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giad051

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    ncbi.nlm.nih.gov/pmc/articles/PMC10360393/
  15. Jun 2023
  16. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Organization of subcortical auditory nuclei of Japanese house bat (Pipistrellus abramus) identified with cytoarchitecture and molecular expression
    1
    1. scibot 01 Jun 2023
      RRID:SCR_001010

      DOI: 10.1002/cne.24529

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    onlinelibrary.wiley.com/doi/10.1002/cne.24529
  17. May 2023
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)
    1
    1. scibot 21 May 2023
      RRID:SCR_001010

      DOI: 10.46471/gigabyte.81

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    ncbi.nlm.nih.gov/pmc/articles/PMC10189783/
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of the Neoaspergillic Acid Biosynthesis Gene Cluster by Establishing an In Vitro CRISPR-Ribonucleoprotein Genetic System in Aspergillus melleus
    1
    1. scibot 21 May 2023
      RRID:SCR_001010

      DOI: 10.1021/acsomega.2c08104

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    ncbi.nlm.nih.gov/pmc/articles/PMC10193573/
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of an Australian native grass species reveals a recent whole-genome duplication and biased gene retention of genes involved in stress response
    1
    1. scibot 16 May 2023
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giad034

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    ncbi.nlm.nih.gov/pmc/articles/PMC10176504/
  21. www.sciencedirect.com www.sciencedirect.com
    Bacterial NLR-related proteins protect against phage
    1
    1. scibot 10 May 2023
      RRID:SCR_001010

      DOI: 10.1016/j.cell.2023.04.015

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    sciencedirect.com/science/article/pii/S0092867423004117
  22. Apr 2023
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Molecular mechanisms underlying hematophagia revealed by comparative analyses of leech genomes
    1
    1. scibot 14 Apr 2023
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giad023

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    ncbi.nlm.nih.gov/pmc/articles/PMC10087013/
  24. academic.oup.com academic.oup.com
    A chromosome-scale high-contiguity genome assembly of the cheetah (Acinonyx jubatus)
    1
    1. scibot 06 Apr 2023
      RRID:SCR_001010

      DOI: 10.1093/jhered/esad015

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    academic.oup.com/jhered/advance-article/doi/10.1093/jhered/esad015/7069302
  25. Mar 2023
  26. academic.oup.com academic.oup.com
    New biochemistry in the Rhodanese-phosphatase superfamily: emerging roles in diverse metabolic processes, nucleic acid modifications, and biological conflicts
    1
    1. scibot 29 Mar 2023
      RRID:SCR_001010

      DOI: 10.1093/nargab/lqad029

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    academic.oup.com/nargab/article/5/1/lqad029/7084609
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The genome of the mustard hill coral, Porites astreoides
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001010

      DOI: 10.46471/gigabyte.65

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    ncbi.nlm.nih.gov/pmc/articles/PMC9693771/
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A phased, chromosome-scale genome of ‘Honeycrisp’ apple (Malus domestica)
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001010

      DOI: 10.46471/gigabyte.69

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    ncbi.nlm.nih.gov/pmc/articles/PMC9693968/
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001010

      DOI: 10.46471/gigabyte.2

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    ncbi.nlm.nih.gov/pmc/articles/PMC9632003/
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001010

      DOI: 10.46471/gigabyte.4

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    ncbi.nlm.nih.gov/pmc/articles/PMC9632040/
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource
    1
    1. scibot 02 Mar 2023
      SCR_001010

      DOI: 10.46471/gigabyte.40

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650269/
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Sex-based de novo transcriptome assemblies of the parasitoid wasp Encarsia suzannae, a host of the manipulative heritable symbiont Cardinium hertigii
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001010

      DOI: 10.46471/gigabyte.68

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    ncbi.nlm.nih.gov/pmc/articles/PMC9693781/
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read HiFi sequencing correctly assembles repetitive heavy fibroin silk genes in new moth and caddisfly genomes
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001010

      DOI: 10.46471/gigabyte.64

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    ncbi.nlm.nih.gov/pmc/articles/PMC9693786/
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome assembly and annotation of the maize elite breeding line Dan340
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001010

      DOI: 10.46471/gigabyte.63

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    ncbi.nlm.nih.gov/pmc/articles/PMC9694154/
  35. 52.53.155.43 52.53.155.43
    A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001010

      DOI: 10.1093/jhered/esad003

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    52.53.155.43/c66fa9b2ea7c129831e4f3a5d878c6edc0d7a347/esad003-html.html
  36. Feb 2023
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus
    1
    1. scibot 16 Feb 2023
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giad002

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    ncbi.nlm.nih.gov/pmc/articles/PMC9912274/
  38. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds
    1
    1. scibot 08 Feb 2023
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giad003

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad003/7025323
  39. www.mdpi.com www.mdpi.com
    Genome Assembly and Comparative Analysis of the Egg Parasitoid Wasp Trichogramma dendrolimi Shed Light on the Composition and Evolution of Olfactory Receptors and Venoms
    1
    1. scibot 04 Feb 2023
      RRID:SCR_001010

      DOI: 10.3390/insects14020144

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    mdpi.com/2075-4450/14/2/144
  40. Jan 2023
  41. www.nature.com www.nature.com
    A chromosome-level genome assembly of Plantago ovata
    1
    1. scibot 31 Jan 2023
      RRID:SCR_001010

      DOI: 10.1038/s41598-022-25078-5

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    nature.com/articles/s41598-022-25078-5
  42. www.sciencedirect.com www.sciencedirect.com
    Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype
    1
    1. scibot 27 Jan 2023
      RRID:SCR_001010

      DOI: 10.1016/j.xcrm.2023.100920

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    sciencedirect.com/science/article/pii/S2666379123000058
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic study and lipidomic bioassay of Leeuwenhoekiella parthenopeia: A novel rare biosphere marine bacterium that inhibits tumor cell viability
    1
    1. scibot 25 Jan 2023
      RRID:SCR_001010

      DOI: 10.3389/fmicb.2022.1090197

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    ncbi.nlm.nih.gov/pmc/articles/PMC9859067/
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of Immunogenic MHC Class II Human HER3 Peptides that Mediate Anti-HER3 CD4+ Th1 Responses and Potential Use as a Cancer Vaccine
    1
    1. scibot 11 Jan 2023
      RRID:SCR_001010

      DOI: 10.1158/2326-6066.CIR-21-0454

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    ncbi.nlm.nih.gov/pmc/articles/PMC9414303/
  45. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome-level genome assembly of Dastarcus helophoroides provides insights into CYP450 genes expression upon insecticide exposure
    1
    1. scibot 10 Jan 2023
      RRID:SCR_001010

      DOI: 10.1002/ps.7319

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    onlinelibrary.wiley.com/doi/10.1002/ps.7319
  46. Dec 2022
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization
    1
    1. scibot 16 Dec 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac120

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    ncbi.nlm.nih.gov/pmc/articles/PMC9730501/
  48. Nov 2022
  49. academic.oup.com academic.oup.com
    The whole-genome assembly of an endangered Salicaceae species: Chosenia arbutifolia (Pall.) A. Skv
    1
    1. scibot 17 Nov 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac109

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac109/6827246
  50. academic.oup.com academic.oup.com
    High-quality genome assembles from key Hawaiian coral species
    1
    1. scibot 12 Nov 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac098

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac098/6815755
  51. Oct 2022
  52. pubs.acs.org pubs.acs.org
    Manipulation of the Global Regulator mcrA Upregulates Secondary Metabolite Production in Aspergillus wentii Using CRISPR-Cas9 with In Vitro Assembled Ribonucleoproteins
    1
    1. scibot 08 Oct 2022
      RRID:SCR_001010

      DOI: 10.1021/acschembio.2c00456

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    pubs.acs.org/doi/10.1021/acschembio.2c00456
  53. Aug 2022
  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Computational analysis on two putative mitochondrial protein-coding genes from the Emydura subglobosa genome: A functional annotation approach
    1
    1. scibot 26 Aug 2022
      RRID:SCR_001010

      DOI: 10.1371/journal.pone.0268031

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    ncbi.nlm.nih.gov/pmc/articles/PMC9387794/
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Antibiotic resistance genes are differentially mobilized according to resistance mechanism
    1
    1. scibot 04 Aug 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac072

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    ncbi.nlm.nih.gov/pmc/articles/PMC9338424/
  56. Jul 2022
  57. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome of the booklouse, Liposcelis brunnea, provides insight into louse evolution and environmental stress adaptation
    1
    1. scibot 27 Jul 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac062

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    ncbi.nlm.nih.gov/pmc/articles/PMC9295366/
  58. 52.53.155.43 52.53.155.43
    A chromosome-scale genome assembly of the okapi (Okapia johnstoni)
    1
    1. scibot 27 Jul 2022
      RRID:SCR_001010

      DOI: 10.1093/jhered/esac033

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    52.53.155.43/ca38f07792210b0253061a6791db53fa681aee2f/esac033-html.html
  59. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of Plazaster borealis sheds light on the morphogenesis of multiarmed starfish and its regenerative capacity
    1
    1. scibot 14 Jul 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac063

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    ncbi.nlm.nih.gov/pmc/articles/PMC9270726/
  60. academic.oup.com academic.oup.com
    Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis
    1
    1. scibot 06 Jul 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac057

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac057/6619298
  61. Jun 2022
  62. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    First Evidence of Past and Present Interactions between Viruses and the Black Soldier Fly, Hermetia illucens
    1
    1. scibot 28 Jun 2022
      RRID:SCR_001010

      DOI: 10.3390/v14061274

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    ncbi.nlm.nih.gov/pmc/articles/PMC9231314/
  63. www.microbiologyresearch.org www.microbiologyresearch.org
    The serotype a-EmaA adhesin of Aggregatibacter actinomycetemcomitans does not require O-PS synthesis for collagen binding activity
    1
    1. scibot 17 Jun 2022
      RRID:SCR_001010

      DOI: 10.1099/mic.0.001191

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    microbiologyresearch.org/content/journal/micro/10.1099/mic.0.001191
  64. academic.oup.com academic.oup.com
    Genomes and demographic histories of the endangered Bretschneidera sinensis (Akaniaceae)
    1
    1. scibot 17 Jun 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac050

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac050/6608505
  65. May 2022
  66. academic.oup.com academic.oup.com
    Chromosome‐level genome assembly of the black widow spider Latrodectus elegans illuminates composition and evolution of venom and silk proteins
    1
    1. scibot 28 May 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac049

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac049/6593146
  67. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characteristics of immune memory and effector activity to cancer-expressed MHC class I phosphopeptides differ in healthy donors and ovarian cancer patients
    1
    1. scibot 04 May 2022
      RRID:SCR_001010

      DOI: 10.1158/2326-6066.CIR-21-0111

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    ncbi.nlm.nih.gov/pmc/articles/PMC8568670/
  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae
    1
    1. scibot 04 May 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac027

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    ncbi.nlm.nih.gov/pmc/articles/PMC9055855/
  69. Apr 2022
  70. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality assembly reveals genomic characteristics, phylogenetic status, and causal genes for leucism plumage of Indian peafowl
    1
    1. scibot 09 Apr 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac018

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    ncbi.nlm.nih.gov/pmc/articles/PMC8985102/
  71. academic.oup.com academic.oup.com
    A high-quality assembled genome and its comparative analysis decode the adaptive molecular mechanism of the number one Chinese cotton variety CRI-12
    1
    1. scibot 05 Apr 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac019

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac019/6562534
  72. Mar 2022
  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features
    1
    1. scibot 31 Mar 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac028

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    ncbi.nlm.nih.gov/pmc/articles/PMC8952263/
  74. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater
    1
    1. scibot 31 Mar 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac025

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    ncbi.nlm.nih.gov/pmc/articles/PMC8963300/
  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Distribution and regulatory roles of oxidized 5-methylcytosines in DNA and RNA of the basidiomycete fungi Laccaria bicolor and Coprinopsis cinerea
    1
    1. scibot 11 Mar 2022
      RRID:SCR_001010

      DOI: 10.1098/rsob.210302

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    ncbi.nlm.nih.gov/pmc/articles/PMC8889193/
  76. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome sequence of the Japanese oak silk moth, Antheraea yamamai: the first draft genome in the family Saturniidae
    1
    1. scibot 05 Mar 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/gix113

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    ncbi.nlm.nih.gov/labs/pmc/articles/PMC5774507/
  77. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome of the ramshorn snail Biomphalaria straminea—an obligate intermediate host of schistosomiasis
    1
    1. scibot 04 Mar 2022
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giac012

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    ncbi.nlm.nih.gov/pmc/articles/PMC8848322/
  78. Jan 2022
  79. onlinelibrary.wiley.com onlinelibrary.wiley.com
    A high-quality chromosome-level genome of the endangered roughskin sculpin provides insights into its evolution and adaptation
    1
    1. scibot 22 Jan 2022
      RRID:SCR_001010

      DOI: 10.1111/1755-0998.13582

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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13582
  80. Dec 2021
  81. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck)
    1
    1. scibot 23 Dec 2021
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giab081

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    ncbi.nlm.nih.gov/pmc/articles/PMC8685854/
  82. academic.oup.com academic.oup.com
    A high-resolution genome of an euryhaline and eurythermal rhinogoby (Rhinogobius similis Gill 1895)
    1
    1. scibot 01 Dec 2021
      RRID:SCR_001010

      DOI: 10.1093/g3journal/jkab395

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    academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkab395/6430980
  83. Nov 2021
  84. gigabytejournal.com gigabytejournal.com
    Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family
    1
    1. scibot 21 Nov 2021
      RRID:SCR_001010

      DOI: 10.46471/gigabyte.32

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    gigabytejournal.com/articles/32
  85. Oct 2021
  86. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of Channa argus and Channa maculata and comparative analysis of their temperature adaptability
    1
    1. scibot 26 Oct 2021
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giab070

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    academic.oup.com/gigascience/article/10/10/giab070/6407244
  87. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    On the diversity of F420 ‐dependent oxidoreductases: A sequence‐ and structure‐based classification
    1
    1. scibot 23 Oct 2021
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      DOI: 10.1002/prot.26170

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    ncbi.nlm.nih.gov/pmc/articles/PMC8518648/
  88. Aug 2021
  89. www.sciencedirect.com www.sciencedirect.com
    The 3D architecture and molecular foundations of de novo centriole assembly via bicentrioles
    1
    1. scibot 25 Aug 2021
      RRID:SCR_001010

      DOI: 10.1016/j.cub.2021.07.063

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    sciencedirect.com/science/article/pii/S0960982221010538
  90. www.authorea.com www.authorea.com
    Whole-genome assembly and annotation of little yellow croaker (Larimichthys polyactis) provide insights into the evolution of hermaphroditism and gonochorism
    1
    1. scibot 16 Aug 2021
      RRID:SCR_001010

      DOI: 10.22541/au.162790498.82247747/v1

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    authorea.com/users/428728/articles/532535-whole-genome-assembly-and-annotation-of-little-yellow-croaker-larimichthys-polyactis-provide-insights-into-the-evolution-of-hermaphroditism-and-gonochorism
  91. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 13 Aug 2021
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz038

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    ncbi.nlm.nih.gov/pmc/articles/PMC6511069/
  92. academic.oup.com academic.oup.com
    Untitled document
    1
    1. scibot 13 Aug 2021
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      DOI: 10.1093/gigascience/giz033

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    academic.oup.com/gigascience/article/8/4/giz033/5429686
  93. academic.oup.com academic.oup.com
    Two distinct metacommunities characterize the gut microbiota in Crohn's disease patients
    1
    1. scibot 13 Aug 2021
      RRID:SCR_001010

      DOI: 10.1093/gigascience/gix050

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    academic.oup.com/gigascience/article/6/7/gix050/3888814
  94. elifesciences.org elifesciences.org
    Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity
    1
    1. scibot 08 Aug 2021
      SCR_001010

      DOI: 10.7554/eLife.22194

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    elifesciences.org/articles/22194v2
  95. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Untitled document
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      DOI: 10.1002/cne.24529

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    onlinelibrary.wiley.com/doi/full/10.1002/cne.24529
  96. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 05 Aug 2021
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    ncbi.nlm.nih.gov/pmc/articles/PMC5624284/
  97. academic.oup.com academic.oup.com
    Chromosome-level genome assembly reveals the unique genome evolution of the swimming crab ( Portunus trituberculatus )
    1
    1. scibot 01 Aug 2021
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz161

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    academic.oup.com/gigascience/article/9/1/giz161/5697200
  98. Jul 2021
  99. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Origin of the Mobile Di-Hydro-Pteroate Synthase Gene Determining Sulfonamide Resistance in Clinical Isolates
    1
    1. scibot 31 Jul 2021
      RRID:SCR_001010

      DOI: 10.3389/fmicb.2018.03332

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    ncbi.nlm.nih.gov/pmc/articles/PMC6335563/
  100. academic.oup.com academic.oup.com
    High-coverage genomes to elucidate the evolution of penguins
    1
    1. scibot 30 Jul 2021
      BLASTP

      DOI: 10.1093/gigascience/giz117

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    academic.oup.com/gigascience/article/8/9/giz117/5571031
  101. genome.cshlp.org genome.cshlp.org
    A chromosome-scale assembly of the axolotl genome
    1
    1. scibot 29 Jul 2021
      BLASTP

      DOI: 10.1101/gr.241901.118

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    genome.cshlp.org/content/29/2/317.full
  102. www.eneuro.org www.eneuro.org
    Identification of Immediate Early Genes in the Nervous System of Snail Helix lucorum
    1
    1. scibot 28 Jul 2021
      BLASTP

      DOI: 10.1523/ENEURO.0416-18.2019

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    eneuro.org/content/6/3/ENEURO.0416-18.2019
  103. academic.oup.com academic.oup.com
    Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry
    1
    1. scibot 28 Jul 2021
      BLASTP

      DOI: 10.1093/gigascience/giz012

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    academic.oup.com/gigascience/article/8/3/giz012/5304886
  104. academic.oup.com academic.oup.com
    Chromosomal-level assembly of yellow catfish genome using third-generation DNA sequencing and Hi-C analysis
    1
    1. scibot 27 Jul 2021
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giy120

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    academic.oup.com/gigascience/article/7/11/giy120/5106933
  105. Jun 2021
  106. academic.oup.com academic.oup.com
    A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome
    1
    1. scibot 23 Jun 2021
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz026

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    academic.oup.com/gigascience/article/8/4/giz026/5426564
  107. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Bacterial death and TRADD-N domains help define novel apoptosis and immunity mechanisms shared by prokaryotes and metazoans
    1
    1. scibot 17 Jun 2021
      RRID:SCR_001010

      DOI: 10.7554/eLife.70394

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    ncbi.nlm.nih.gov/pmc/articles/PMC8195603/
  108. May 2021
  109. onlinelibrary.wiley.com onlinelibrary.wiley.com
    The Meishan pig genome reveals structural variation mediated gene expression and phenotypic divergence underlying Asian pig domestication
    1
    1. scibot 11 May 2021
      RRID:SCR_001010

      DOI: 10.1111/1755-0998.13396

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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13396
  110. jb.asm.org jb.asm.org
    Identification of uncharacterized components of prokaryotic immune systems and their diverse eukaryotic reformulations
    1
    1. scibot 10 May 2021
      RRID:SCR_001010

      DOI: 10.1128/JB.00365-20

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  111. www.sciencedirect.com www.sciencedirect.com
    Comprehensive analysis of genomic alterations, clinical outcomes, putative functions and potential therapeutic value of MMP11 in human breast cancer
    1
    1. scibot 06 May 2021
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      DOI: 10.1016/j.genrep.2020.100852

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    sciencedirect.com/science/article/pii/S2452014420302661
  112. www.sciencedirect.com www.sciencedirect.com
    A Weak Link with Actin Organizes Tight Junctions to Control Epithelial Permeability
    1
    1. scibot 05 May 2021
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      DOI: 10.1016/j.devcel.2020.07.022

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    sciencedirect.com/science/article/pii/S1534580720305979
  113. Apr 2021
  114. academic.oup.com academic.oup.com
    A chromosome-level reference genome of the hazelnut, Corylus heterophylla Fisch
    1
    1. scibot 24 Apr 2021
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      DOI: 10.1093/gigascience/giab027

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  115. Mar 2021
  116. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery
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    1. scibot 21 Mar 2021
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      DOI: 10.1016/j.immuni.2021.02.014

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    ncbi.nlm.nih.gov/pmc/articles/PMC7960510/
  117. www.sciencedirect.com www.sciencedirect.com
    A synthetic diterpene analogue inhibits mycobacterial persistence and biofilm formation by targeting (p)ppGpp synthetases
    1
    1. scibot 08 Mar 2021
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      DOI: 10.1016/j.chembiol.2021.01.018

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    sciencedirect.com/science/article/pii/S2451945621000441
  118. Feb 2021
  119. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of Aldrichina grahami , a forensically important blowfly
    1
    1. scibot 24 Feb 2021
      RRID:SCR_0

      DOI: 10.1093/gigascience/giaa020

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  120. elifesciences.org elifesciences.org
    Diverse viral proteases activate the NLRP1 inflammasome
    1
    1. scibot 09 Feb 2021
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      DOI: 10.7554/eLife.60609

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  121. Jan 2021
  122. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Jumbo Phages: A Comparative Genomic Overview of Core Functions and Adaptions for Biological Conflicts
    1
    1. scibot 26 Jan 2021
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      DOI: 10.3390/v13010063

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    ncbi.nlm.nih.gov/pmc/articles/PMC7824862/
  123. academic.oup.com academic.oup.com
    A chromosome-level genome assembly of the oriental river prawn, Macrobrachium nipponense
    1
    1. scibot 26 Jan 2021
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      DOI: 10.1093/gigascience/giaa160

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  124. Dec 2020
  125. academic.oup.com academic.oup.com
    Genome sequencing of deep-sea hydrothermal vent snails reveals adaptions to extreme environments
    1
    1. scibot 19 Dec 2020
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      DOI: 10.1093/gigascience/giaa139

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  126. Oct 2020
  127. academic.oup.com academic.oup.com
    Pacific Biosciences assembly with Hi-C mapping generates an improved, chromosome-level goose genome
    1
    1. scibot 30 Oct 2020
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      DOI: 10.1093/gigascience/giaa114

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  128. Sep 2020
  129. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Degron capability of the hydrophobic C‐terminus of the polyglutamine disease protein, ataxin‐3
    1
    1. scibot 26 Sep 2020
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      DOI: 10.1002/jnr.24684

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    onlinelibrary.wiley.com/doi/10.1002/jnr.24684
  130. www.sciencedirect.com www.sciencedirect.com
    Structural modeling, mutation analysis, and in vitro expression of usherin, a major protein in inherited retinal degeneration and hearing loss
    1
    1. scibot 23 Sep 2020
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      DOI: 10.1016/j.csbj.2020.05.025

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    sciencedirect.com/science/article/pii/S2001037020302889
  131. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of the female western mosquitofish ( Gambusia affinis )
    1
    1. scibot 23 Sep 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giaa092

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  132. aem.asm.org aem.asm.org
    Identification of genes required for glucan exopolysaccharide production in Lactobacillus johnsonii suggests a novel mechanism of biosynthesis
    1
    1. scibot 17 Sep 2020
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      DOI: 10.1128/AEM.02808-19

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  133. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A High-Quality Chromosomal Genome Assembly of Diospyros oleiferaCheng
    1
    1. scibot 17 Sep 2020
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      DOI: 10.1093/gigascience/giz164

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  134. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Highly regulated, diversifying NTP-dependent biological conflict systems with implications for the emergence of multicellularity
    1
    1. scibot 17 Sep 2020
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      DOI: 10.7554/eLife.52696

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  135. academic.oup.com academic.oup.com
    The chromosome-level draft genome of Dalbergia odorifera
    1
    1. scibot 17 Sep 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giaa084

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    academic.oup.com/gigascience/article/9/8/giaa084/5893771
  136. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Building the vertebrate codex using the gene breaking protein trap library
    1
    1. scibot 16 Sep 2020
      RRID:SCR_001010

      DOI: 10.7554/eLife.54572

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  137. www.microbiologyresearch.org www.microbiologyresearch.org
    Mycoparasitism illuminated by genome and transcriptome sequencing of Coniothyrium minitans, an important biocontrol fungus of the plant pathogen Sclerotinia sclerotiorum
    1
    1. scibot 14 Sep 2020
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      DOI: 10.1099/mgen.0.000345

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  138. www.sciencedirect.com www.sciencedirect.com
    Protocol for Genome-Scale Reconstruction and Melanogenesis Analysis of Exophiala dermatitidis
    1
    1. scibot 12 Sep 2020
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      DOI: 10.1016/j.xpro.2020.100105

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    sciencedirect.com/science/article/pii/S2666166720300927
  139. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome‐level genome assembly of a cyprinid fish Onychostoma macrolepis by integration of Nanopore Sequencing, Bionano and Hi‐C technology
    1
    1. scibot 09 Sep 2020
      RRID:SCR_001010

      DOI: 10.1111/1755-0998.13190

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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13190
  140. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Local frustration determines loop opening during the catalytic cycle of an oxidoreductase
    1
    1. scibot 08 Sep 2020
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      DOI: 10.7554/eLife.54661

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  141. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of Aldrichina grahami , a forensically important blowfly
    1
    1. scibot 03 Sep 2020
      RRID:SCR 0 01010

      DOI: 10.1093/gigascience/giaa020

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  142. www.frontiersin.org www.frontiersin.org
    Functional Innovation in the Evolution of the Calcium-Dependent System of the Eukaryotic Endoplasmic Reticulum
    1
    1. scibot 03 Sep 2020
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      DOI: 10.3389/fgene.2020.00034

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  143. Jan 2020
  144. academic.oup.com academic.oup.com
    An integrated respiratory microbial gene catalogue to better understand the microbial aetiology of Mycoplasma pneumoniae pneumonia
    1
    1. scibot 13 Jan 2020
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      DOI: 10.1093/gigascience/giz093

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  145. academic.oup.com academic.oup.com
    Hybrid de novo genome assembly of Chinese chestnut ( Castanea mollissima )
    1
    1. scibot 13 Jan 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz112

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  146. elifesciences.org elifesciences.org
    The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs
    1
    1. scibot 13 Jan 2020
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      DOI: 10.7554/eLife.46754

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  147. academic.oup.com academic.oup.com
    Chromosome-level assembly of the mustache toad genome using third-generation DNA sequencing and Hi-C analysis
    1
    1. scibot 13 Jan 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz114

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  148. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Trochodendron aralioides, the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research
    1
    1. scibot 13 Jan 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz136

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  149. academic.oup.com academic.oup.com
    Genome and population sequencing of a chromosome-level genome assembly of the Chinese tapertail anchovy ( Coilia nasus ) provides novel insights into migratory adaptation
    1
    1. scibot 13 Jan 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz157

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  150. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)
    1
    1. scibot 13 Jan 2020
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      DOI: 10.1093/gigascience/giz059

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    ncbi.nlm.nih.gov/pmc/articles/PMC6528745/
  151. academic.oup.com academic.oup.com
    A high-quality genome assembly for the endangered golden snub-nosed monkey (Rhinopithecus roxellana)
    1
    1. scibot 13 Jan 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz098

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  152. academic.oup.com academic.oup.com
    Chromosomal-level reference genome of Chinese peacock butterfly ( Papilio bianor ) based on third-generation DNA sequencing and Hi-C analysis
    1
    1. scibot 13 Jan 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz128

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    academic.oup.com/gigascience/article/8/11/giz128/5612101
  153. academic.oup.com academic.oup.com
    A chromosomal-level genome assembly for the giant African snail Achatina fulica
    1
    1. scibot 13 Jan 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz124

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  154. academic.oup.com academic.oup.com
    Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome
    1
    1. scibot 13 Jan 2020
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      DOI: 10.1093/gigascience/giz115

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  155. academic.oup.com academic.oup.com
    The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates
    1
    1. scibot 13 Jan 2020
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      DOI: 10.1093/gigascience/giz099

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  156. academic.oup.com academic.oup.com
    De novo genome assembly of the white-spotted flower chafer (Protaetia brevitarsis)
    1
    1. scibot 13 Jan 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz019

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  157. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
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      DOI: 10.1093/gigascience/giz026

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    ncbi.nlm.nih.gov/pmc/articles/PMC6446218/
  158. academic.oup.com academic.oup.com
    The genomic basis for colonizing the freezing Southern Ocean revealed by Antarctic toothfish and Patagonian robalo genomes
    1
    1. scibot 13 Jan 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz016

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    academic.oup.com/gigascience/article/8/4/giz016/5304890
  159. academic.oup.com academic.oup.com
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    1. scibot 13 Jan 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz013

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  160. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Origin of the Mobile Di-Hydro-Pteroate Synthase Gene Determining Sulfonamide Resistance in Clinical Isolates
    1
    1. scibot 12 Jan 2020
      RRID:SCR_001010

      DOI: 10.3389/fmicb.2018.03332

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    ncbi.nlm.nih.gov/pmc/articles/PMC6335563/
  161. academic.oup.com academic.oup.com
    De novo assembly of the Indian blue peacock ( Pavo cristatus ) genome using Oxford Nanopore technology and Illumina sequencing
    1
    1. scibot 12 Jan 2020
      RRID:SCR_001010

      DOI: 10.1093/gigascience/giz038

      Resource: BLASTP (RRID:SCR_001010)

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    academic.oup.com/gigascience/article/8/5/giz038/5488106
  162. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.1093/gigascience/giz033

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    ncbi.nlm.nih.gov/pmc/articles/PMC6451198/
  163. Nov 2018
  164. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    ncbi.nlm.nih.gov/pmc/articles/PMC6136493/
  165. academic.oup.com academic.oup.com
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    academic.oup.com/gigascience/article/7/9/giy104/5074355
  166. www.sciencedirect.com www.sciencedirect.com
    A Novel Eukaryotic Denitrification Pathway in Foraminifera
    1
    1. scibot 05 Nov 2018
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    sciencedirect.com/science/article/pii/S0960982218308182
  167. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis
    1
    1. scibot 05 Nov 2018
      RRID:SCR_001010

      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC5946861/
  168. academic.oup.com academic.oup.com
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      Curator: @evieth

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    academic.oup.com/gigascience/article/7/3/gix137/4803946
  169. onlinelibrary.wiley.com onlinelibrary.wiley.com
    FoxP in bees: A comparative study on the developmental and adult expression pattern in three bee species considering isoforms and circuitry
    1
    1. scibot 05 Nov 2018
      RRID:SCR_001010

      Curator: @anp055

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    onlinelibrary.wiley.com/doi/10.1002/cne.24430
  170. academic.oup.com academic.oup.com
    Draft genomes of two blister beetles Hycleus cichorii and Hycleus phaleratus
    1
    1. scibot 05 Nov 2018
      RRID:SCR_001010

      Curator: @evieth

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    academic.oup.com/gigascience/article/7/3/giy006/4850510
  171. academic.oup.com academic.oup.com
    GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline
    1
    1. scibot 05 Nov 2018
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    academic.oup.com/gigascience/article/7/3/giy005/4841850
  172. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Draft genome assembly of the Bengalese finch, Lonchura striata domestica, a model for motor skill variability and learning
    1
    1. scibot 05 Nov 2018
      BLASTP

      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC5861438/
  173. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    ncbi.nlm.nih.gov/pmc/articles/PMC5863215/
  174. academic.oup.com academic.oup.com
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  175. europepmc.org europepmc.org
    Improving amphibian genomic resources: a multitissue reference transcriptome of an iconic invader.
    1
    1. scibot 05 Nov 2018
      RRID:SCR_001010

      Curator: @evieth

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    europepmc.org/articles/PMC5765561/
  176. europepmc.org europepmc.org
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    europepmc.org/articles/PMC5774507/
  177. europepmc.org europepmc.org
    Genome sequence of the small brown planthopper, Laodelphax striatellus.
    1
    1. scibot 05 Nov 2018
      RRID:SCR_001010

      Curator: @evieth

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    europepmc.org/articles/PMC5740986/
  178. elifesciences.org elifesciences.org
    Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins
    1
    1. scibot 05 Nov 2018
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    elifesciences.org/articles/27860
  179. Nov 2017
  180. academic.oup.com academic.oup.com
    The draft genome of blunt snout bream (Megalobrama amblycephala) reveals the development of intermuscular bone and adaptation to herbivorous diet
    1
    1. scibot 08 Nov 2017
      RRID:SCR_001010

      Curator: @chewbeccax

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    academic.oup.com/gigascience/article/6/7/1/3847731/The-draft-genome-of-blunt-snout-bream-Megalobrama
  181. academic.oup.com academic.oup.com
    De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read
    1
    1. scibot 08 Nov 2017
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  182. academic.oup.com academic.oup.com
    Two distinct metacommunities characterize the gut microbiota in Crohn's disease patients
    1
    1. scibot 08 Nov 2017
      RRID:SCR_001010

      Curator: @patriciaelyse_

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    academic.oup.com/gigascience/article/6/7/gix050/3888814
  183. europepmc.org europepmc.org
    Dosage compensation and sex-specific epigenetic landscape of the X chromosome in the pea aphid.
    1
    1. scibot 08 Nov 2017
      RRID:SCR_001010

      Curator: @Jmenke

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    europepmc.org/articles/PMC5471693/
  184. journal.frontiersin.org journal.frontiersin.org
    Streptomyces venezuelae ISP5230 Maintains Excretion of Jadomycin upon Disruption of the MFS Transporter JadL Located within the Natural Product Biosynthetic Gene Cluster
    1
    1. scibot 08 Nov 2017
      SCR_001010

      Curator: @kaitlinsung

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    journal.frontiersin.org/article/10.3389/fmicb.2017.00432/full
  185. www.sciencedirect.com www.sciencedirect.com
    A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo
    1
    1. scibot 08 Nov 2017
      BLASTp

      Curator: @Zeljana_Babic

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    sciencedirect.com/science/article/pii/S001216061630118X