152 Matching Annotations
  1. Last 7 days
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    ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF
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    1. scibot 21 Dec 2024
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    Quantitative profiling of human translation initiation reveals elements that potently regulate endogenous and therapeutically modified mRNAs
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    1. scibot 21 Dec 2024
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      DOI: 10.1016/j.molcel.2024.11.030

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  4. Dec 2024
  5. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The Differences in Local Translatome across Distinct Neuron Types Is Mediated by Both Baseline Cellular Differences and Post-transcriptional Mechanisms
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    1. scibot 14 Dec 2024
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      DOI: 10.1523/ENEURO.0320-18.2018

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      DOI: 10.1523/ENEURO.0320-18.2018

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    pmc.ncbi.nlm.nih.gov/articles/PMC6361723/
  6. Oct 2024
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    An in vitro approach reveals molecular mechanisms underlying endocrine disruptor-induced epimutagenesis
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    1. scibot 05 Oct 2024
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      DOI: 10.7554/eLife.93975

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    ncbi.nlm.nih.gov/pmc/articles/PMC11449486/
  8. Aug 2024
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    CRISPR screening uncovers a long-range enhancer for ONECUT1 in pancreatic differentiation and links a diabetes risk variant
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    1. scibot 23 Aug 2024
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    ncbi.nlm.nih.gov/pmc/articles/PMC11406439/
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    Members of an array of zinc-finger proteins specify distinct Hox chromatin boundaries
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    1. scibot 23 Aug 2024
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  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    p53R172H and p53R245W Hotspot Mutations Drive Distinct Transcriptomes in Mouse Mammary Tumors Through a Convergent Transcriptional Mediator
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    1. scibot 21 Aug 2024
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      DOI: 10.1158/2767-9764.CRC-24-0128

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    ncbi.nlm.nih.gov/pmc/articles/PMC11310746/
  12. link.springer.com link.springer.com
    A Complex Interplay Between Melatonin and RORβ: RORβ is Unlikely a Putative Receptor for Melatonin as Revealed by Biophysical Assays
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    1. scibot 20 Aug 2024
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      DOI: 10.1007/s12035-024-04395-y

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    link.springer.com/article/10.1007/s12035-024-04395-y
  13. Jul 2024
  14. www.sciencedirect.com www.sciencedirect.com
    MYB-related transcription factors control chloroplast biogenesis
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    1. scibot 24 Jul 2024
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      DOI: 10.1016/j.cell.2024.06.039

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    A ghost moth olfactory prototype of the lepidopteran sex communication
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    1. scibot 23 Jul 2024
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      DOI: 10.1093/gigascience/giae044

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    ncbi.nlm.nih.gov/pmc/articles/PMC11258902/
  16. Jun 2024
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome of Peucedanum praeruptorum Dunn provides insights into the genome evolution and coumarin biosynthesis
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    1. scibot 08 Jun 2024
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      DOI: 10.1093/gigascience/giae025

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    ncbi.nlm.nih.gov/pmc/articles/PMC11152176/
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved chromosome-level assembly and annotation of European hazelnut (C. avellana cv. Jefferson) provides insight into mechanisms of eastern filbert blight resistance
    1
    1. scibot 08 Jun 2024
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      DOI: 10.1093/g3journal/jkae021

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    ncbi.nlm.nih.gov/pmc/articles/PMC11152071/
  19. May 2024
  20. 52.53.155.43 52.53.155.43
    ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF
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    1. scibot 29 May 2024
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      DOI: 10.1101/2024.03.08.583864

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      DOI: 10.1101/2024.03.08.583864

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  21. 52.53.155.43 52.53.155.43
    mcr-23-0295-html.html
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    1. scibot 23 May 2024
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      DOI: 10.1158/1541-7786.mcr-23-0295

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    Molecular targets of glucocorticoids that elucidate their therapeutic efficacy in aggressive lymphomas
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    1. scibot 03 May 2024
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    sciencedirect.com/science/article/pii/S1535610824001314
  23. Mar 2024
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptome-informed identification and characterisation of Planococcus citri cis- and trans-isoprenyl diphosphate synthase genes
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    1. scibot 27 Mar 2024
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      DOI: 10.1016/j.isci.2024.109441

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    ncbi.nlm.nih.gov/pmc/articles/PMC10960109/
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    Sexually dimorphic control of affective state processing and empathic behaviors
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      DOI: 10.1016/j.neuron.2024.02.001

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    sciencedirect.com/science/article/pii/S0896627324000850
  26. www.sciencedirect.com www.sciencedirect.com
    Structure of the plant plastid-encoded RNA polymerase
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      DOI: 10.1016/j.cell.2024.01.036

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  27. Feb 2024
  28. aacrjournals.org aacrjournals.org
    p53R245W mutation fuels cancer initiation and metastases in NASH-driven liver tumorigenesis
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      DOI: 10.1158/2767-9764.CRC-23-0218

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    aacrjournals.org/cancerrescommun/article/3/12/2640/732161/p53R245W-Mutation-Fuels-Cancer-Initiation-and
  29. 52.53.155.43 52.53.155.43
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  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The EstroGene database reveals diverse temporal, context-dependent, and bidirectional estrogen receptor regulomes in breast cancer
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      DOI: 10.1158/0008-5472.CAN-23-0539

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    Genome-wide p63-target gene analyses reveal TAp63/NRF2-dependent oxidative stress responses
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    Development of sexual dimorphism of skeletal muscles through the adrenal cortex, caused by androgen-induced global gene suppression
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      DOI: 10.1016/j.celrep.2024.113715

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  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PUF partner interactions at a conserved interface shape the RNA-binding landscape and cell fate in Caenorhabditis elegans
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      DOI: 10.1016/j.devcel.2024.01.005

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  34. Jan 2024
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Unique transcriptional profiles underlie osteosarcomagenesis driven by different p53 mutants
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      DOI: 10.1158/0008-5472.CAN-22-3464

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    Genetic insights into carbohydrate sulfotransferase 8 and its impact on the immunotherapy efficacy of cancer
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      DOI: 10.1016/j.celrep.2023.113641

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  37. aacrjournals.org aacrjournals.org
    p53R245W mutation fuels cancer initiation and metastases in NASH-driven liver tumorigenesis
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      DOI: 10.1158/2767-9764.CRC-23-0218

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  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Leveraging tissue-specific enhancer-target gene regulatory networks identifies enhancer somatic mutations that functionally impact lung cancer
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      DOI: 10.1158/0008-5472.CAN-23-1129

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  39. Dec 2023
  40. 52.53.155.43 52.53.155.43
    can-23-1129-html.html
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  41. Nov 2023
  42. 52.53.155.43 52.53.155.43
    schall-latham-2023-predictive-modeling-of-oocyte-maternal-mrna-features-of-five-mammalian-species-reveals-potential (1)-html.html
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      DOI: 10.6084/m9.figshare.22674448.v1

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    52.53.155.43/b38c22d2b0c9591d1f12b114a1f97bc735ea3c68/schall-latham-2023-predictive-modeling-of-oocyte-maternal-mrna-features-of-five-mammalian-species-reveals-potential (1)-html.html
  43. Oct 2023
  44. www.sciencedirect.com www.sciencedirect.com
    In silico discovery of repetitive elements as key sequence determinants of 3D genome folding
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      DOI: 10.1016/j.xgen.2023.100410

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    sciencedirect.com/science/article/pii/S2666979X23002240
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    nf-core/clipseq - a robust Nextflow pipeline for comprehensive CLIP data analysis
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      DOI: 10.12688/wellcomeopenres.19453.1

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    ncbi.nlm.nih.gov/pmc/articles/PMC10565428/
  46. Sep 2023
  47. www.sciencedirect.com www.sciencedirect.com
    Variation in the CENP-A sequence association landscape across diverse inbred mouse strains
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    1. scibot 30 Sep 2023
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      DOI: 10.1016/j.celrep.2023.113178

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    sciencedirect.com/science/article/pii/S2211124723011907
  48. www.biorxiv.org www.biorxiv.org
    A haplotype-resolved chromosome-level assembly and annotation of European hazelnut (C. avellana cv. Jefferson) provides insight into mechanisms of eastern filbert blight resistance
    1
    1. scibot 30 Sep 2023
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      DOI: 10.1101/2023.09.21.558899

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    biorxiv.org/content/10.1101/2023.09.21.558899v1
  49. link.springer.com link.springer.com
    Maize heat shock proteins—prospection, validation, categorization and in silico analysis of the different ZmHSP families
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    1. scibot 07 Sep 2023
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      DOI: 10.1007/s44154-023-00104-2

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  50. Aug 2023
  51. 52.53.155.43 52.53.155.43
    Loss of CtBP2 may be a mechanistic link between metabolic derangements and progressive impairment of pancreatic β cell function
    2
    1. scibot 18 Aug 2023
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  52. Jul 2023
  53. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Low-level repressive histone marks fine-tune gene transcription in neural stem cells
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    Identification of transcriptional regulatory variants in pig duodenum, liver, and muscle tissues
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  58. May 2023
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    Bioinformatics and gene expression analysis of the legume F-box/WD40 proteins in NaCl and high temperature stress
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  60. Apr 2023
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    Axonal mRNA binding of hnRNP A/B is crucial for axon targeting and maturation of olfactory sensory neurons
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    Two salivary proteins Sm10 and SmC002 from grain aphid Sitobion miscanthi modulate wheat defense and enhance aphid performance
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  63. Mar 2023
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    Large Maf transcription factor family is a major regulator of fast type IIb myofiber determination
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    Capture RIC-seq reveals positional rules of PTBP1-associated RNA loops in splicing regulation
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    Physcomitrium patens PpRIC, an ancestral CRIB-domain ROP effector, inhibits auxin-induced differentiation of apical initial cells
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  70. Jan 2023
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    The genome wide analysis of Tryptophan Aminotransferase Related gene family, and their relationship with related agronomic traits in Brassica napus
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  72. Nov 2022
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    The freezability of Mediterranean buffalo sperm is associated with lysine succinylation and lipid metabolism
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  74. Sep 2022
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    A natural transdifferentiation event involving mitosis is empowered by integrating signaling inputs with conserved plasticity factors
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    A small proportion of X-linked genes contribute to X chromosome upregulation in early embryos via BRD4-mediated transcriptional activation
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  82. May 2022
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    Functional Interaction Between the Oncogenic Kinase NEK2 and Sam68 Promotes a Splicing Program Involved in Migration and Invasion in Triple-Negative Breast Cancer
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  85. Apr 2022
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    Trans-omics analysis of insulin action reveals a cell growth sub-network which co-regulates anabolic processes
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    EBF1 nuclear repositioning instructs chromatin refolding to promote therapy resistance in T leukemic cells
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  93. Jan 2022
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  96. Dec 2021
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  98. Oct 2021
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    Information content differentiates enhancers from silencers in mouse photoreceptors
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  104. Aug 2021
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    onlinelibrary.wiley.com/doi/full/10.1002/cne.24696
  157. Nov 2018
  158. www.sciencedirect.com www.sciencedirect.com
    A Short Tandem Repeat-Enriched RNA Assembles a Nuclear Compartment to Control Alternative Splicing and Promote Cell Survival
    1
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      FIMO (MEME suite)

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    sciencedirect.com/science/article/pii/S1097276518307019
  159. www.sciencedirect.com www.sciencedirect.com
    Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries
    1
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      MEME

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    sciencedirect.com/science/article/pii/S0092867418310213
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    Architectural Proteins and Pluripotency Factors Cooperate to Orchestrate the Transcriptional Response of hESCs to Temperature Stress
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      MEME

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    sciencedirect.com/science/article/pii/S1097276518305811
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    Systematic Characterization of Stress-Induced RNA Granulation
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      MEME suite

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    sciencedirect.com/science/article/pii/S1097276518301448
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  163. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    ncbi.nlm.nih.gov/pmc/articles/PMC6023610/
  164. elifesciences.org elifesciences.org
    TALE factors use two distinct functional modes to control an essential zebrafish gene expression program
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    elifesciences.org/articles/36144
  165. www.sciencedirect.com www.sciencedirect.com
    Dual Requirement of CHD8 for Chromatin Landscape Establishment and Histone Methyltransferase Recruitment to Promote CNS Myelination and Repair
    1
    1. scibot 05 Nov 2018
      MEME

      Curator: @Jmenke

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    sciencedirect.com/science/article/pii/S1534580718304155
  166. elifesciences.org elifesciences.org
    Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver
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      MEME Suite

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    elifesciences.org/articles/34077
  167. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      RRID:SCR_001783

      Curator: @bandrow @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC5967868/
  168. elifesciences.org elifesciences.org
    BRG1 governs glucocorticoid receptor interactions with chromatin and pioneer factors across the genome
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      RRID:SCR_001783

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    elifesciences.org/articles/35073
  169. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch
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      RRID:SCR_001783

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    ncbi.nlm.nih.gov/pmc/articles/PMC5889339/
  170. www.cell.com www.cell.com
    The Immune Landscape of Cancer
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      RRID:SCR_001783

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    cell.com/immunity/references/S1074-7613(18)30121-3
  171. elifesciences.org elifesciences.org
    Untitled document
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    elifesciences.org/articles/33014
  172. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Atf3 links loss of epithelial polarity to defects in cell differentiation and cytoarchitecture
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      RRID:SCR_001783

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    ncbi.nlm.nih.gov/pmc/articles/PMC5849342/
  173. elifesciences.org elifesciences.org
    Integration of human pancreatic islet genomic data refines regulatory mechanisms at Type 2 Diabetes susceptibility loci
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      RRID:SCR_001783

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    elifesciences.org/articles/31977
  174. Nov 2017
  175. www.sciencedirect.com www.sciencedirect.com
    Antagonistic Activities of Sox2 and Brachyury Control the Fate Choice of Neuro-Mesodermal Progenitors
    1
    1. scibot 08 Nov 2017
      Meme

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    sciencedirect.com/science/article/pii/S153458071730597X
  176. www.sciencedirect.com www.sciencedirect.com
    Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection
    1
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      MEME Suite

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S1097276517303635
  177. elifesciences.org elifesciences.org
    Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity
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      SCR_001783

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    elifesciences.org/articles/22194v2
  178. bmcgenomics.biomedcentral.com bmcgenomics.biomedcentral.com
    Transcriptomic buffering of cryptic genetic variation contributes to meningococcal virulence
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    1. scibot 08 Nov 2017
      MEME version 4.8.1

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    bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3616-7
  179. www.sciencedirect.com www.sciencedirect.com
    The BET Protein BRD2 Cooperates with CTCF to Enforce Transcriptional and Architectural Boundaries
    1
    1. scibot 08 Nov 2017
      MEME Suite

      Curator: @Zeljana_Babic

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    sciencedirect.com/science/article/pii/S1097276517301648
  180. www.sciencedirect.com www.sciencedirect.com
    Foxh1 Occupies cis-Regulatory Modules Prior to Dynamic Transcription Factor Interactions Controlling the Mesendoderm Gene Program
    1
    1. scibot 08 Nov 2017
      SCR_001783

      Curator: @kaitlinsung

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    sciencedirect.com/science/article/pii/S1534580717300862
  181. www.sciencedirect.com www.sciencedirect.com
    Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription
    1
    1. scibot 08 Nov 2017
      MEME Suite

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    sciencedirect.com/science/article/pii/S0092867417303434
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    The Landscape of Mouse Meiotic Double-Strand Break Formation, Processing, and Repair
    1
    1. scibot 08 Nov 2017
      MEME-ChIP

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    sciencedirect.com/science/article/pii/S0092867416313174
  183. www.sciencedirect.com www.sciencedirect.com
    Identification of an RNA Polymerase III Regulator Linked to Disease-Associated Protein Aggregation
    1
    1. scibot 08 Nov 2017
      MEME Suite

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    sciencedirect.com/science/article/pii/S1097276517301375
  184. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex
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      SCR_001783

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    ncbi.nlm.nih.gov/pmc/articles/PMC5325622/
  185. www.sciencedirect.com www.sciencedirect.com
    Nuclear RNA Decay Pathways Aid Rapid Remodeling of Gene Expression in Yeast
    1
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      MEME

      Curator: @kaitlinsung

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    sciencedirect.com/science/article/pii/S1097276517300059
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    Paf1 Has Distinct Roles in Transcription Elongation and Differential Transcript Fate
    1
    1. scibot 08 Nov 2017
      DREME

      Curator: @kaitlinsung

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    sciencedirect.com/science/article/pii/S1097276517300060
  187. www.sciencedirect.com www.sciencedirect.com
    RNA Binding to CBP Stimulates Histone Acetylation and Transcription
    1
    1. scibot 08 Nov 2017
      MEME

      Curator: @Zeljana_Babic

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    sciencedirect.com/science/article/pii/S0092867416317366
  188. www.sciencedirect.com www.sciencedirect.com
    Direct GR Binding Sites Potentiate Clusters of TF Binding across the Human Genome
    1
    1. scibot 08 Nov 2017
      MEME Suite

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S0092867416309990
  189. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Verrucomicrobia LexA-Binding Motif: Insights into the Evolutionary Dynamics of the SOS Response
    1
    1. scibot 08 Nov 2017
      SCR_001783

      Curator: @chewbeccax

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    ncbi.nlm.nih.gov/pmc/articles/PMC4951493/
  190. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Inference of gene regulation functions from dynamic transcriptome data
    1
    1. scibot 08 Nov 2017
      SCR_001783

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    ncbi.nlm.nih.gov/pmc/articles/PMC5072840/