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  1. Last 7 days
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    Development of two machine learning models to predict conversion from primary HER2-0 breast cancer to HER2-low metastases: a proof-of-concept study
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    1. scibot 21 Dec 2024
      RRID:SCR_002630

      DOI: 10.1016/j.esmoop.2024.104087

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    sciencedirect.com/science/article/pii/S205970292401857X
  3. Nov 2024
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Overcoming off-target optical stimulation-evoked cortical activity in the mouse brain in vivo
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    1. scibot 15 Nov 2024
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    pmc.ncbi.nlm.nih.gov/articles/PMC11543908/
  5. Oct 2024
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PKMYT1 Is a Marker of Treatment Response and a Therapeutic Target for CDK4/6 Inhibitor-Resistance in ER+ Breast Cancer
    1
    1. scibot 04 Oct 2024
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      DOI: 10.1158/1535-7163.MCT-23-0564

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    ncbi.nlm.nih.gov/pmc/articles/PMC11443213/
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Oncogenic Calreticulin Induces Immune Escape by Stimulating TGF-β Expression and Regulatory T Cell Expansion in the Bone Marrow Microenvironment
    1
    1. scibot 02 Oct 2024
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      DOI: 10.1158/0008-5472.CAN-23-3553

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    ncbi.nlm.nih.gov/pmc/articles/PMC11405138/
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Spike transmission failures in axons from cortical neurons in vivo
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    1. scibot 01 Oct 2024
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      DOI: 10.1016/j.isci.2024.110884

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    ncbi.nlm.nih.gov/pmc/articles/PMC11439538/
  9. Sep 2024
  10. www.biorxiv.org www.biorxiv.org
    A Comprehensive Proteogenomic and Spatial Analysis of Innate and Acquired Resistance of Metastatic Melanoma to Immune Checkpoint Blockade Therapies
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    1. scibot 29 Sep 2024
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      DOI: 10.1101/2024.09.12.612675

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    biorxiv.org/content/10.1101/2024.09.12.612675v1
  11. Aug 2024
  12. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Immunocytochemical organization and sour taste activation in the rostral nucleus of the solitary tract of mice
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    1. scibot 02 Aug 2024
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      DOI: 10.1002/cne.24059

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    onlinelibrary.wiley.com/doi/10.1002/cne.24059/full
  13. Jul 2024
  14. www.cell.com www.cell.com
    Proteobacteria impair anti-tumor immunity in the omentum by consuming arginine
    1
    1. scibot 18 Jul 2024
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      DOI: 10.1016/j.chom.2024.06.003

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    cell.com/cell-host-microbe/abstract/S1931-3128(24)00197-5
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Heparan sulfate-dependent phase separation of CCL5 and its chemotactic activity
    1
    1. scibot 04 Jul 2024
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      DOI: 10.7554/eLife.93871

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    ncbi.nlm.nih.gov/pmc/articles/PMC11216747/
  16. May 2024
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Tumor niche network-defined subtypes predict immunotherapy response of esophageal squamous cell cancer
    1
    1. scibot 15 May 2024
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      DOI: 10.1016/j.isci.2024.109795

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    ncbi.nlm.nih.gov/pmc/articles/PMC11089351/
  18. Feb 2024
  19. aacrjournals.org aacrjournals.org
    Zoledronic acid add-on therapy for standard-risk Ewing sarcoma patients in the Ewing 2008R1 trial
    1
    1. scibot 24 Feb 2024
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      DOI: 10.1158/1078-0432.CCR-23-1966

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    aacrjournals.org/clincancerres/article/29/24/5057/731658/Zoledronic-Acid-Add-on-Therapy-for-Standard-Risk
  20. genomebiology.biomedcentral.com genomebiology.biomedcentral.com
    The androgen receptor interacts with GATA3 to transcriptionally regulate a luminal epithelial cell phenotype in breast cancer
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    1. scibot 07 Feb 2024
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      DOI: 10.1186/s13059-023-03161-y

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    genomebiology.biomedcentral.com/articles/10.1186/s13059-023-03161-y
  21. Jan 2024
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Computational reproducibility of Jupyter notebooks from biomedical publications
    2
    1. scibot 14 Jan 2024
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      DOI: 10.1093/gigascience/giad113

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      DOI: 10.1093/gigascience/giad113

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    ncbi.nlm.nih.gov/pmc/articles/PMC10783158/
  23. Dec 2023
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    From policy to practice: Lessons learned from an open science funding initiative
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    1. scibot 10 Dec 2023
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      DOI: 10.1371/journal.pcbi.1011626

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    ncbi.nlm.nih.gov/pmc/articles/PMC10703508/
  25. 52.53.155.43 52.53.155.43
    ccr-23-1966-html.html
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    1. scibot 01 Dec 2023
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      DOI: 10.1158/1078-0432.ccr-23-1966

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  26. May 2023
  27. www.sciencedirect.com www.sciencedirect.com
    Tumor biology and immune infiltration define primary liver cancer subsets linked to overall survival after immunotherapy
    1
    1. scibot 24 May 2023
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      DOI: 10.1016/j.xcrm.2023.101052

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    sciencedirect.com/science/article/pii/S2666379123001660
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Patterns of Oncogene Coexpression at Single-Cell Resolution Influence Survival in Lymphoma
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    1. scibot 06 May 2023
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      DOI: 10.1158/2159-8290.CD-22-0998

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    ncbi.nlm.nih.gov/pmc/articles/PMC10157367/
  29. Apr 2023
  30. www.sciencedirect.com www.sciencedirect.com
    Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia
    4
    1. scibot 15 Apr 2023
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      DOI: 10.1016/j.celrep.2023.112373

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      DOI: 10.1016/j.celrep.2023.112373

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    sciencedirect.com/science/article/pii/S2211124723003844
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structurally Complex Osteosarcoma Genomes Exhibit Limited Heterogeneity within Individual Tumors and across Evolutionary Time
    1
    1. scibot 14 Apr 2023
      RRID:SCR_002630

      DOI: 10.1158/2767-9764.CRC-22-0348

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    ncbi.nlm.nih.gov/pmc/articles/PMC10093779/
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transferred mitochondria accumulate reactive oxygen species, promoting proliferation
    1
    1. scibot 05 Apr 2023
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      DOI: 10.7554/eLife.85494

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    ncbi.nlm.nih.gov/pmc/articles/PMC10042539/
  33. Mar 2023
  34. link.springer.com link.springer.com
    Effect of Dataset Size and Medical Image Modality on Convolutional Neural Network Model Performance for Automated Segmentation: A CT and MR Renal Tumor Imaging Study
    1
    1. scibot 18 Mar 2023
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      DOI: 10.1007/s10278-023-00804-1

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    link.springer.com/article/10.1007/s10278-023-00804-1
  35. Nov 2022
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Persistence of hippocampal and striatal multivoxel patterns during awake rest after motor sequence learning
    1
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      DOI: 10.1016/j.isci.2022.105498

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    ncbi.nlm.nih.gov/pmc/articles/PMC9672934/
  37. Sep 2022
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Original research: Extracellular Vesicles from Pancreatic Cancer Stem Cells Lead an Intratumor Communication Network (EVNet) to fuel tumour progression
    1
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      DOI: 10.1136/gutjnl-2021-324994

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    ncbi.nlm.nih.gov/pmc/articles/PMC9271144/
  39. Apr 2022
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    AP-2α and AP-2β cooperatively function in the craniofacial surface ectoderm to regulate chromatin and gene expression dynamics during facial development
    1
    1. scibot 27 Apr 2022
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      DOI: 10.7554/eLife.70511

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    ncbi.nlm.nih.gov/pmc/articles/PMC9038197/
  41. Mar 2022
  42. www.sciencedirect.com www.sciencedirect.com
    A weakened recurrent circuit in the hippocampus of Rett syndrome mice disrupts long-term memory representations
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    1. scibot 26 Mar 2022
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      DOI: 10.1016/j.neuron.2022.02.014

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    sciencedirect.com/science/article/pii/S0896627322001799
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Gut microbial trimethylamine is elevated in alcohol-associated hepatitis and contributes to ethanol-induced liver injury in mice
    1
    1. scibot 04 Mar 2022
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      DOI: 10.7554/eLife.76554

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    ncbi.nlm.nih.gov/pmc/articles/PMC8853661/
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Paired Feed-Forward Excitation With Delayed Inhibition Allows High Frequency Computations Across Brain Regions
    1
    1. scibot 04 Mar 2022
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      DOI: 10.3389/fncir.2021.803065

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    ncbi.nlm.nih.gov/pmc/articles/PMC8862685/
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    NDI: A platform-independent data interface and database for neuroscience physiology and imaging experiments
    1
    1. scibot 04 Mar 2022
      RRID:SCR_002630

      DOI: 10.1523/ENEURO.0073-21.2022

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    ncbi.nlm.nih.gov/pmc/articles/PMC8874953/
  46. Nov 2021
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    LXR directly regulates glycosphingolipid synthesis and affects human CD4+ T cell function
    1
    1. scibot 19 Nov 2021
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      DOI: 10.1073/pnas.2017394118

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    ncbi.nlm.nih.gov/pmc/articles/PMC8166169/
  48. Oct 2021
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Optimization-based Eukaryotic Genetic Circuit Design (EuGeneCiD) and modeling (EuGeneCiM) tools: Computational approach to synthetic biology
    1
    1. scibot 08 Oct 2021
      RRID:SCR_002630

      DOI: 10.1016/j.isci.2021.103000

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    ncbi.nlm.nih.gov/pmc/articles/PMC8479143/
  50. Sep 2021
  51. www.sciencedirect.com www.sciencedirect.com
    Using EuGeneCiD and EuGeneCiM computational tools for synthetic biology
    1
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      DOI: 10.1016/j.xpro.2021.100820

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    sciencedirect.com/science/article/pii/S2666166721005268
  52. Aug 2021
  53. elifesciences.org elifesciences.org
    Untitled document
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      DOI: 10.7554/eLife.20944

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    elifesciences.org/articles/20944
  54. Jul 2021
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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      DOI: 10.7554/eLife.39279

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    ncbi.nlm.nih.gov/pmc/articles/PMC6398974/
  56. Jun 2021
  57. elifesciences.org elifesciences.org
    Quantitative mapping of human hair greying and reversal in relation to life stress
    1
    1. scibot 26 Jun 2021
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      DOI: 10.7554/eLife.67437

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    elifesciences.org/articles/67437
  58. May 2021
  59. onlinelibrary.wiley.com onlinelibrary.wiley.com
    C-bouton components on rat extensor digitorum longus motoneurons are resistant to chronic functional overload
    1
    1. scibot 20 May 2021
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      DOI: 10.1111/joa.13439

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    onlinelibrary.wiley.com/doi/10.1111/joa.13439
  60. www.sciencedirect.com www.sciencedirect.com
    Curious Containers: A framework for computational reproducibility in life sciences with support for Deep Learning applications
    1
    1. scibot 06 May 2021
      RRID:SCR_002630

      DOI: 10.1016/j.future.2020.05.007

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    sciencedirect.com/science/article/pii/S0167739X19318096
  61. Feb 2021
  62. elifesciences.org elifesciences.org
    Synaptic and intrinsic mechanisms underlying development of cortical direction selectivity
    1
    1. scibot 26 Feb 2021
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      DOI: 10.7554/eLife.58509

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    elifesciences.org/articles/58509
  63. www.sciencedirect.com www.sciencedirect.com
    Decoding Natural Sounds in Early “Visual” Cortex of Congenitally Blind Individuals
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      DOI: 10.1016/j.cub.2020.05.071

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    sciencedirect.com/science/article/pii/S0960982220307582
  64. www.sciencedirect.com www.sciencedirect.com
    Large, Stable Spikes Exhibit Differential Broadening in Excitatory and Inhibitory Neocortical Boutons
    1
    1. scibot 09 Feb 2021
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      DOI: 10.1016/j.celrep.2020.108612

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  65. Jan 2021
  66. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Constitutive activation of cellular immunity underlies the evolution of resistance to infection in Drosophila
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      DOI: 10.7554/eLife.59095

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  67. Sep 2020
  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An early phase of instructive plasticity before the typical onset of sensory experience
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      DOI: 10.1038/s41467-019-13872-1

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  69. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Efficient coding of natural scene statistics predicts discrimination thresholds for grayscale textures
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      DOI: 10.7554/eLife.54347

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  70. academic.oup.com academic.oup.com
    Earliest amyloid and tau deposition modulate the influence of limbic networks during closed-loop hippocampal downregulation
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      DOI: 10.1093/brain/awaa011

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  71. www.sciencedirect.com www.sciencedirect.com
    Protocol for Genome-Scale Reconstruction and Melanogenesis Analysis of Exophiala dermatitidis
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      DOI: 10.1016/j.xpro.2020.100105

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  72. academic.oup.com academic.oup.com
    CandiMeth: Powerful yet simple visualization and quantification of DNA methylation at candidate genes
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      DOI: 10.1093/gigascience/giaa066

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  73. link.springer.com link.springer.com
    Axonal Tree Morphology and Signal Propagation Dynamics Improve Interneuron Classification
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      DOI: 10.1007/s12021-020-09466-8

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  74. elifesciences.org elifesciences.org
    Synaptic and intrinsic mechanisms underlying development of cortical direction selectivity
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      DOI: 10.7554/eLife.58509

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  75. Jan 2020
  76. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.7554/eLife.39279

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  77. www.sciencedirect.com www.sciencedirect.com
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      DOI: 10.1016/j.neuroimage.2019.05.008

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  78. Nov 2018
  79. link.springer.com link.springer.com
    Navigating Xenbase: An Integrated <Emphasis Type="Italic">Xenopus</Emphasis> Genomics and Gene Expression Database
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  80. academic.oup.com academic.oup.com
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  81. www.sciencedirect.com www.sciencedirect.com
    A Nuclear Export Block Triggers the Decay of Newly Synthesized Polyadenylated RNA
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  82. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Immunocytochemical organization and sour taste activation in the rostral nucleus of the solitary tract of mice
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  83. Nov 2017
  84. academic.oup.com academic.oup.com
    The Neuroimaging Data Model (NIDM) API
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  85. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Rules and mechanisms for efficient two-stage learning in neural circuits
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  86. www.sciencedirect.com www.sciencedirect.com
    Context- and Output Layer-Dependent Long-Term Ensemble Plasticity in a Sensory Circuit
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      Moco

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  87. www.sciencedirect.com www.sciencedirect.com
    Mechanism of Substrate Translocation in an Alternating Access Transporter
    1
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      RAPD

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  88. www.sciencedirect.com www.sciencedirect.com
    MicroRNAs Establish Uniform Traits during the Architecture of Vertebrate Embryos
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    sciencedirect.com/science/article/pii/S153458071730117X
  89. www.sciencedirect.com www.sciencedirect.com
    Stage-Specific Human Induced Pluripotent Stem Cells Map the Progression of Myeloid Transformation to Transplantable Leukemia
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      STAR alignment tool

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  90. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Experiment Factory: Standardizing Behavioral Experiments
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      Curator: @chewbeccax

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  91. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    2015 Brainhack Proceedings
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  92. link.springer.com link.springer.com
    Quantitative Arbor Analytics: Unsupervised Harmonic Co-Clustering of Populations of Brain Cell Arbors Based on L-Measure - Springer
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      GITHUB

      Curator: @jcabotaj

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