407 Matching Annotations
  1. Dec 2024
  2. www.sciencedirect.com www.sciencedirect.com
    A cross-cohort study identifies potential oral microbial markers for esophageal squamous cell carcinoma
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    1. scibot 14 Dec 2024
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      DOI: 10.1016/j.isci.2024.111453

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    sciencedirect.com/science/article/pii/S2589004224026804
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    Integrated proteomic and transcriptomic landscape of human placenta in small for gestational age infants
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    1. scibot 14 Dec 2024
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      DOI: 10.1016/j.isci.2024.111423

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    sciencedirect.com/science/article/pii/S2589004224026488
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    PAD2-Mediated Citrullination Contributes to Efficient Oligodendrocyte Differentiation and Myelination
    1
    1. scibot 14 Dec 2024
      RRID:SCR_003032

      DOI: 10.1016/j.celrep.2019.03.108

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    pmc.ncbi.nlm.nih.gov/articles/PMC6486480/
  5. 52.53.155.43 52.53.155.43
    1-s2.0-S2589004224027640-main-html.html
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    1. scibot 10 Dec 2024
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  6. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Age-Related ECM Stiffness Mediates TRAIL Activation in Muscle Stem Cell Differentiation
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    1. scibot 06 Dec 2024
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      DOI: 10.1002/adbi.202400334

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    onlinelibrary.wiley.com/doi/10.1002/adbi.202400334
  7. Nov 2024
  8. www.sciencedirect.com www.sciencedirect.com
    Harnessing biosynthesized selenium nanoparticles for recruitment of beneficial soil microbes to plant roots
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    1. scibot 24 Nov 2024
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      DOI: 10.1016/j.chom.2024.10.015

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    sciencedirect.com/science/article/pii/S1931312824004013
  9. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Single-cell transcriptomic analysis reveals the developmental trajectory and transcriptional regulatory networks of quinoa salt bladders
    1
    1. scibot 17 Nov 2024
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      DOI: 10.1007/s44154-024-00189-3

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    pmc.ncbi.nlm.nih.gov/articles/PMC11557854/
  10. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Time-resolved proximity proteomics uncovers a membrane tension-sensitive caveolin-1 interactome at the rear of migrating cells
    1
    1. scibot 07 Nov 2024
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      DOI: 10.7554/eLife.85601

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    pmc.ncbi.nlm.nih.gov/articles/PMC11509677/
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mitochondrial apolipoprotein MIC26 is a metabolic rheostat regulating central cellular fuel pathways
    1
    1. scibot 07 Nov 2024
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      DOI: 10.26508/lsa.202403038

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    ncbi.nlm.nih.gov/pmc/articles/PMC11472510/
  12. Oct 2024
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Quiescence and aging of melanocyte stem cells and a novel association with PD-L1
    1
    1. scibot 05 Oct 2024
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      DOI: 10.1016/j.isci.2024.110908

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    ncbi.nlm.nih.gov/pmc/articles/PMC11440800/
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Prime-Boost Vaccination Approach Induces Lung Resident Memory CD8+ T Cells Derived from Central Memory T Cells That Prevent Tumor Lung Metastasis
    1
    1. scibot 04 Oct 2024
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      DOI: 10.1158/0008-5472.CAN-23-3257

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    ncbi.nlm.nih.gov/pmc/articles/PMC11443216/
  15. Sep 2024
  16. www.biorxiv.org www.biorxiv.org
    Acute increase of protein O-GlcNAcylation in mice leads to transcriptome changes in the brain opposite to what is observed in Alzheimer’s Disease
    1
    1. scibot 28 Sep 2024
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      DOI: 10.1101/2024.09.19.613769

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    biorxiv.org/content/10.1101/2024.09.19.613769v1
  17. elifesciences.org elifesciences.org
    Muscle-resident mesenchymal progenitors sense and repair peripheral nerve injury via the GDNF-BDNF axis
    1
    1. scibot 28 Sep 2024
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      DOI: 10.7554/eLife.97662

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    elifesciences.org/articles/97662
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    Genomic surveillance as a scalable framework for precision phage therapy against antibiotic-resistant pathogens
    1
    1. scibot 27 Sep 2024
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      DOI: 10.1016/j.cell.2024.09.009

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    sciencedirect.com/science/article/pii/S0092867424010274
  19. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Epigenetic response of endothelial cells to different wall shear stress magnitudes: A report of new mechano‐miRNAs
    1
    1. scibot 25 Sep 2024
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      DOI: 10.1002/jcp.29436

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    onlinelibrary.wiley.com/doi/10.1002/jcp.29436
  20. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Proteostasis network alteration in lysosomal storage disorders: Insights from the mouse model of Krabbe disease
    1
    1. scibot 25 Sep 2024
      RRID:SCR_015784

      DOI: 10.1002/jnr.24558

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    onlinelibrary.wiley.com/doi/10.1002/jnr.24558
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Proteomic landscape of tunneling nanotubes reveals CD9 and CD81 tetraspanins as key regulators
    1
    1. scibot 15 Sep 2024
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      DOI: 10.7554/eLife.99172

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    ncbi.nlm.nih.gov/pmc/articles/PMC11383530/
  22. Aug 2024
  23. www.sciencedirect.com www.sciencedirect.com
    Genetic association with autoimmune diseases identifies molecular mechanisms of coronary artery disease
    1
    1. scibot 28 Aug 2024
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      DOI: 10.1016/j.isci.2024.110715

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    sciencedirect.com/science/article/pii/S2589004224019400
  24. www.sciencedirect.com www.sciencedirect.com
    Immune suppression by human thymus-derived effector Tregs relies on glucose/lactate-fueled fatty acid synthesis
    1
    1. scibot 27 Aug 2024
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      DOI: 10.1016/j.celrep.2024.114681

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    sciencedirect.com/science/article/pii/S2211124724010325
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    mTORC1-driven protein translation correlates with clinical benefit of capivasertib within a genetically preselected cohort of PIK3CA-altered tumours
    1
    1. scibot 23 Aug 2024
      RRID:SCR_003032

      DOI: 10.1158/2767-9764.CRC-24-0113

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    ncbi.nlm.nih.gov/pmc/articles/PMC11320025/
  26. www.sciencedirect.com www.sciencedirect.com
    Functional genomic analysis of genes important for Candida albicans fitness in diverse environmental conditions
    1
    1. scibot 21 Aug 2024
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      DOI: 10.1016/j.celrep.2024.114601

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    sciencedirect.com/science/article/pii/S2211124724009409
  27. Jul 2024
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Presynaptic Rac1 in the hippocampus selectively regulates working memory
    1
    1. scibot 27 Jul 2024
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      DOI: 10.7554/eLife.97289

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    ncbi.nlm.nih.gov/pmc/articles/PMC11268886/
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    LncRNA CARMN m6A demethylation by ALKBH5 inhibits mutant p53‐driven tumour progression through miR‐5683/FGF2
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    1. scibot 26 Jul 2024
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      DOI: 10.1002/ctm2.1777

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    ncbi.nlm.nih.gov/pmc/articles/PMC11263751/
  30. www.cell.com www.cell.com
    Innate immune training restores pro-reparative myeloid functions to promote remyelination in the aged central nervous system
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    1. scibot 25 Jul 2024
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      DOI: 10.1016/j.immuni.2024.07.001

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    cell.com/immunity/fulltext/S1074-7613(24)00348-0
  31. www.sciencedirect.com www.sciencedirect.com
    Predictive Biomarkers for Response to TGF- β Inhibition in Resensitizing Chemo(radiated) Esophageal Adenocarcinoma
    1
    1. scibot 25 Jul 2024
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      DOI: 10.1016/j.phrs.2024.107315

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    sciencedirect.com/science/article/pii/S1043661824002603
  32. www.sciencedirect.com www.sciencedirect.com
    The activity of early-life gene regulatory elements is hijacked in aging through pervasive AP-1-linked chromatin opening
    1
    1. scibot 19 Jul 2024
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      DOI: 10.1016/j.cmet.2024.06.006

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    sciencedirect.com/science/article/pii/S1550413124002316
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ALDH1A3-acetaldehyde metabolism potentiates transcriptional heterogeneity in melanoma
    1
    1. scibot 18 Jul 2024
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      DOI: 10.1016/j.celrep.2024.114406

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    ncbi.nlm.nih.gov/pmc/articles/PMC11290356/
  34. translational-medicine.biomedcentral.com translational-medicine.biomedcentral.com
    A novel CAF-cancer cell crosstalk-related gene prognostic index based on machine learning: prognostic significance and prediction of therapeutic response in head and neck squamous cell carcinoma
    1
    1. scibot 12 Jul 2024
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      DOI: 10.1186/s12967-024-05447-6

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    translational-medicine.biomedcentral.com/articles/10.1186/s12967-024-05447-6
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of Neuronal Lineages in the Drosophila Peripheral Nervous System with a “Digital” Multi-spectral Lineage Tracing System
    1
    1. scibot 09 Jul 2024
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      DOI: 10.1016/j.celrep.2019.10.124

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    ncbi.nlm.nih.gov/pmc/articles/PMC6913890/
  36. www.mdpi.com www.mdpi.com
    Immunological Signatures for Early Detection of Human Head and Neck Squamous Cell Carcinoma through RNA Transcriptome Analysis of Blood Platelets
    2
    1. scibot 03 Jul 2024
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      DOI: 10.3390/cancers16132399

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      DOI: 10.3390/cancers16132399

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    mdpi.com/2072-6694/16/13/2399
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated re-analysis of transcriptomic and proteomic datasets reveals potential mechanisms for Zika viral-based oncolytic therapy in neuroblastoma
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    1. scibot 03 Jul 2024
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      DOI: 10.12688/f1000research.132627.3

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    ncbi.nlm.nih.gov/pmc/articles/PMC11187533/
  38. Jun 2024
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The clock gene BHLHE40 and atypical CCNG2 control androgen-induced cellular senescence as a novel tumor suppressive pathway in prostate cancer
    1
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      DOI: 10.1186/s13046-024-03097-6

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    ncbi.nlm.nih.gov/pmc/articles/PMC11188219/
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Sex-biased regulatory changes in the placenta of native highlanders contribute to adaptive fetal development
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      DOI: 10.7554/eLife.89004

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    ncbi.nlm.nih.gov/pmc/articles/PMC11175615/
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Early detection and diagnosis of cancer with interpretable machine learning to uncover cancer-specific DNA methylation patterns
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      DOI: 10.1093/biomethods/bpae028

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      DOI: 10.1093/biomethods/bpae028

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    ncbi.nlm.nih.gov/pmc/articles/PMC11186673/
  42. www.sciencedirect.com www.sciencedirect.com
    Spatial proteomics of skeletal muscle using thin cryosections reveals metabolic adaptation at the muscle-tendon transition zone
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      DOI: 10.1016/j.celrep.2024.114374

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    sciencedirect.com/science/article/pii/S2211124724007022
  43. www.sciencedirect.com www.sciencedirect.com
    EYA protein complex is required for Wntless retrograde trafficking from endosomes to Golgi
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      DOI: 10.1016/j.devcel.2024.05.021

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    sciencedirect.com/science/article/pii/S1534580724003393
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome of Peucedanum praeruptorum Dunn provides insights into the genome evolution and coumarin biosynthesis
    1
    1. scibot 08 Jun 2024
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      DOI: 10.1093/gigascience/giae025

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    ncbi.nlm.nih.gov/pmc/articles/PMC11152176/
  45. onlinelibrary.wiley.com onlinelibrary.wiley.com
    A comparative analysis of paxillin and Hic-5 proximity interactomes
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      DOI: 10.1002/cm.21878

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    onlinelibrary.wiley.com/doi/10.1002/cm.21878
  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of the biological functions and chemo-therapeutic responses of ITGB superfamily in ovarian cancer
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      DOI: 10.1007/s12672-024-01047-4

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    ncbi.nlm.nih.gov/pmc/articles/PMC11139846/
  47. May 2024
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Exosome-mediated secretion of miR-127-3p regulated by RAB27A accelerates metastasis in renal cell carcinoma
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  49. Apr 2024
  50. www.sciencedirect.com www.sciencedirect.com
    Identification of hypoxic macrophages in glioblastoma with therapeutic potential for vasculature normalization
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  51. Mar 2024
  52. www.sciencedirect.com www.sciencedirect.com
    Peripheral neuronal activation shapes the microbiome and alters gut physiology
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  53. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Molecular docking, ADMET profiling of gallic acid and its derivatives (N-alkyl gallamide) as apoptosis agent of breast cancer MCF-7 Cells
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  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Discovery of non-genomic drivers of YAP signaling modulating the cell plasticity in CRC tumor lines
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    hCoCena: A toolbox for network-based co-expression analysis and horizontal integration of transcriptomic datasets
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    Treatment response in first-line metastatic pancreatic ductal adenocarcinoma is stratified by a composite index of tumor proliferation and CD8 T cell infiltration
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    Retinoic acid receptor activation reprograms senescence response and enhances anti-tumor activity of natural killer cells
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  58. Feb 2024
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    Comparative transcriptomic analysis of circulating endothelial cells in sickle cell stroke
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    Single-cell transcriptomics reveals the heterogeneity of the immune landscape of IDH-wildtype high-grade gliomas
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      DOI: 10.1158/2326-6066.CIR-23-0211

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    Differential Sensitivity to Longitudinal and Transverse Stretch Mediates Transcriptional Responses in Mouse Neonatal Ventricular Myocytes
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    Integrating Network Pharmacology and Experimental Verification to Explore the Pharmacological Mechanisms of Radix Paeoniae Rubra Against Glioma
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    Glycolytic enzyme PFKFB3 regulates sphingosinae 1-phosphate receptor 1 in proangiogenic glomerular endothelial cells under diabetic condition
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    Influenza A virus propagation requires the activation of the unfolded protein response and the accumulation of insoluble protein aggregates
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  65. www.nature.com www.nature.com
    A clinically applicable connectivity signature for glioblastoma includes the tumor network driver CHI3L1
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    Active natural compounds perturb the melanoma risk-gene network
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    Investigating HMGB1 as a Potential Serum Biomarker for Early Diabetic Nephropathy Monitoring by Quantitative Proteomics
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  68. Jan 2024
  69. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiation and Function
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      DOI: 10.1101/2023.12.20.570481

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    TDP-43-stratified single-cell proteomics of postmortem human spinal motor neurons reveals protein dynamics in amyotrophic lateral sclerosis
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  71. Dec 2023
  72. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Histone methyltransferase SUV420H1/KMT5B contributes to poor prognosis in hepatocellular carcinoma
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      DOI: 10.1111/cas.16038

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    The proteomic fingerprint in infants with single ventricle heart disease in the interstage period: evidence of chronic inflammation and widespread activation of biological networks
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    SARS-CoV-2 RNA stabilizes host mRNAs to elicit immunopathogenesis
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    RAF-like protein kinases mediate a deeply conserved, rapid auxin response
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    Topoisomerase 1 Inhibition in MYC-Driven Cancer Promotes Aberrant R-Loop Accumulation to Induce Synthetic Lethality
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      DOI: 10.1158/0008-5472.CAN-22-2948

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    Integrated omics landscape of hepatocellular carcinoma suggests proteomic subtypes for precision therapy
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      DOI: 10.1016/j.xcrm.2023.101315

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    Integrated multi-omics profiling to dissect the spatiotemporal evolution of metastatic hepatocellular carcinoma
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    physiolgenomics.00070.2023-html.html
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      DOI: 10.6084/m9.figshare.23598732.v4

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  80. Nov 2023
  81. link.springer.com link.springer.com
    Unraveling the molecular links between benzopyrene exposure, NASH, and HCC: an integrated bioinformatics and experimental study
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      DOI: 10.1038/s41598-023-46440-1

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    IL23R as an indicator of immune infiltration and poor prognosis in intrahepatic cholangiocarcinoma: a bioinformatics analysis
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      DOI: 10.21037/tcr-23-455

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    Establishing an early indicator for data sharing and reuse
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      DOI: 10.1002/leap.1586

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    Integration of transcriptomes of senescent cell models with multi-tissue patient samples reveals reduced COL6A3 as an inducer of senescence
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    Integrated Network Analysis of microRNAs, mRNAs, and Proteins Reveals the Regulatory Interaction between hsa-mir-200b and CFL2 Associated with Advanced Stage and Poor Prognosis in Patients with Intestinal Gastric Cancer
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      DOI: 10.3390/cancers15225374

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    Broodstock nutritional programming differentially affects the hepatic transcriptome and genome-wide DNA methylome of farmed gilthead sea bream (Sparus aurata) depending on genetic background
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      DOI: 10.1186/s12864-023-09759-7

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    The hypoxia-regulated ectonucleotidase CD73 is a host determinant of HIV latency
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  88. Oct 2023
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    Loss of succinyl-CoA synthetase in mouse forebrain results in hypersuccinylation with perturbed neuronal transcription and metabolism
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    Three-dimensional genome architecture coordinates key regulators of lineage specification in mammary epithelial cells
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  91. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The effect of chronic lithium treatment on hippocampal progenitor cells: Transcriptomic analysis and systems pharmacology
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    Complement factor D targeting protects endotheliopathy in organoid and monkey models of COVID-19
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  93. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Protein kinase B (PKB/AKT) protects IDH-mutated glioma from ferroptosis via Nrf2
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      DOI: 10.1158/1078-0432.CCR-22-3179

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    Comprehensive Analysis of Tumor Microenvironment Reveals Prognostic ceRNA Network Related to Immune Infiltration in Sarcoma
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  96. Sep 2023
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    The Drosophila ecdysone receptor promotes or suppresses proliferation according to ligand level
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    Early fate decision for mitochondrially encoded proteins by a molecular triage
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    Integration of eQTL and machine learning to dissect causal genes with pleiotropic effects in genetic regulation networks of seed cotton yield
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    Molecular Subtypes of Head and Neck Cancer in Patients of African Ancestry
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  102. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Prognosis signature for predicting the survival and immunotherapy response in esophageal carcinoma based on cellular senescence-related genes
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  104. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A combined immunopeptidomics, proteomics, and cell surface proteomics approach to identify immunotherapy targets for diffuse intrinsic pontine glioma
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    Identification of Potential Therapeutic Targets for Myopic Choroidal Neovascularization via Discovery-Driven Data Mining
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    Network analysis identifies strain-dependent response to tau and tau seeding-associated genes
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    Identification of the novel FOXP3-dependent Treg cell transcription factor MEOX1 by high-dimensional analysis of human CD4+ T cells
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    Comparative single-cell profiling reveals distinct cardiac resident macrophages essential for zebrafish heart regeneration
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    Molecular docking, ADMET profiling of gallic acid and its derivatives (N-alkyl gallamide) as an anti-breast cancer agent
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    Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks
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  111. Jul 2023
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    Genomic analyses provide insights into the evolution and salinity adaptation of halophyte Tamarix chinensis
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    Adeno-associated viral vectors for functional intravenous gene transfer throughout the non-human primate brain
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  114. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    Plant myo-inositol transport influences bacterial colonization phenotypes
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    Protocol to identify human subcellular alternative protein interactions using cross-linking mass spectrometry
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  117. Jun 2023
  118. www.nature.com www.nature.com
    Extracellular vesicle-associated IGF2BP3 tunes Ewing sarcoma cell migration and affects PI3K/Akt pathway in neighboring cells
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  119. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of transcriptional regulatory variants in pig duodenum, liver, and muscle tissues
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    F1000Research Article: Integrative transcriptomic and proteomic study of Zika viral infection reveals potential mechanisms for oncolytic therapy in neuroblastoma.
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    Quantitative trait and transcriptome analysis of genetic complexity underpinning cardiac interatrial septation in mice using an advanced intercross line
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    Excitatory amino acid transporter 1 supports adult hippocampal neural stem cell self-renewal
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  123. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Single-cell RNA-seq uncovers novel metabolic functions of Schwann cells beyond myelination
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    Kv7/KCNQ potassium channels in cortical hyperexcitability and juvenile seizure-related death in Ank2-mutant mice
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    Immunosensitivity mediated by downregulated AKT1-SKP2 induces anti-PD-1-associated thyroid immune injury
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  126. aacrjournals.org aacrjournals.org
    Enhanced glutaminolysis drives hypoxia-induced chemoresistance in pancreatic cancer
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      DOI: 10.1158/0008-5472.CAN-22-2045

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  127. May 2023
  128. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The genomic landscape of sensitivity to arsenic trioxide uncovered by genome-wide CRISPR-Cas9 screening
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    Network analysis reveals a major role for 14q32 cluster miRNAs in determining transcriptional differences between IGHV-mutated and unmutated CLL
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  130. 52.53.155.43 52.53.155.43
    Relationships between gene expression and behavior in mice in response to systemic modulation of the O-GlcNAcylation pathway
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  131. link.springer.com link.springer.com
    iTRAQ-based comparative proteomics reveal an enhancing role of PRDX6 in the freezability of Mediterranean buffalo sperm
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  132. Apr 2023
  133. aacrjournals.org aacrjournals.org
    N6-Methyladenosine RNA Modifications Regulate the Response to Platinum through Nicotinamide N-methyltransferase
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  134. www.nature.com www.nature.com
    Spatial and temporal dynamics of ATP synthase from mitochondria toward the cell surface
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  135. www.sciencedirect.com www.sciencedirect.com
    Exercise training remodels inguinal white adipose tissue through adaptations in innervation, vascularization, and the extracellular matrix
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    TIAR and FMRP shape pro-survival nascent proteome of leukemia cells in the bone marrow microenvironment
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    Glucocerebrosidase is imported into mitochondria and preserves complex I integrity and energy metabolism
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  138. www.mdpi.com www.mdpi.com
    The Secretome of Parental and Bone Metastatic Breast Cancer Elicits Distinct Effects in Human Osteoclast Activity after Activation of β2 Adrenergic Signaling
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  139. link.springer.com link.springer.com
    Comprehensive proteomics and platform validation of urinary biomarkers for bladder cancer diagnosis and staging
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  140. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PGC-1s shape epidermal physiology by modulating keratinocyte proliferation and terminal differentiation
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  141. Mar 2023
  142. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Study on tillering stage cold tolerant response in overwintering cultivated rice via comparative transcriptomic
    1
    1. scibot 29 Mar 2023
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      DOI: 10.1002/fes3.450

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  143. www.sciencedirect.com www.sciencedirect.com
    Capture RIC-seq reveals positional rules of PTBP1-associated RNA loops in splicing regulation
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  144. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Original research: Invasive margin tissue-resident macrophages of high CD163 expression impede responses to T cell-based immunotherapy
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      DOI: 10.1136/jitc-2022-006433

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  145. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Developing mRNA signatures as a novel prognostic biomarker predicting high risk multiple myeloma
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  146. www.biorxiv.org www.biorxiv.org
    Protein network analysis links the NSL complex to Parkinson's disease and mitochondrial biology
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      DOI: 10.1101/2023.01.27.524249

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  147. www.cell.com www.cell.com
    Hippo pathway and Bonus control developmental cell fate decisions in the Drosophila eye
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  148. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Skeletal dysplasia-causing TRPV4 mutations suppress the hypertrophic differentiation of human iPSC-derived chondrocytes
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      DOI: 10.7554/eLife.71154

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  149. Feb 2023
  150. link.springer.com link.springer.com
    Genes critical for development and differentiation of dopaminergic neurons are downregulated in Parkinson’s disease
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    1. scibot 25 Feb 2023
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  151. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SREBP modulates the NADP+/NADPH cycle to control night sleep in Drosophila
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      DOI: 10.1038/s41467-022-35577-8

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  152. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Protein composition of axonal dopamine release sites in the striatum
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    1. scibot 23 Feb 2023
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      DOI: 10.7554/eLife.83018

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  153. www.sciencedirect.com www.sciencedirect.com
    Protocol for comparing gene-level selection on coding mutations between two groups of samples with Coselens
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  154. physoc.onlinelibrary.wiley.com physoc.onlinelibrary.wiley.com
    The transcript interactome of skeletal muscle RNA binding protein motif 3 (RBM3)
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      DOI: 10.14814/phy2.15596

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  155. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of Potential Biomarkers for Coronary Artery Disease Based on Cuproptosis
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      DOI: 10.1155/2023/5996144

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  156. www.hindawi.com www.hindawi.com
    Identification of Potential Biomarkers for Coronary Artery Disease Based on Cuproptosis
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  157. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cellular mechanism of action of forsythiaside for the treatment of diabetic kidney disease
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      DOI: 10.3389/fphar.2022.1096536

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  158. Jan 2023
  159. www.sciencedirect.com www.sciencedirect.com
    Decoding m6A RNA methylome identifies PRMT6-regulated lipid transport promoting AML stem cell maintenance
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      DOI: 10.1016/j.stem.2022.12.003

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    Employing non-targeted interactomics approach and subcellular fractionation to increase our understanding of the ghost proteome
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      DOI: 10.1016/j.isci.2023.105943

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    Rewiring of hormones and light response pathways underlies the inhibition of stomatal development in an amphibious plant Rorippa aquatica underwater
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      DOI: 10.1016/j.cub.2022.12.064

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  162. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Open and reusable annotated mass spectrometry dataset of a chemodiverse collection of 1,600 plant extracts
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  163. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Yishen Xiezhuo formula ameliorates the development of cisplatin-induced acute kidney injury by attenuating renal tubular epithelial cell senescence
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      DOI: 10.21037/atm-22-5415

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  164. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Overproduction of IFNγ by Cbl-b–Deficient CD8+ T Cells Provides Resistance against Regulatory T Cells and Induces Potent Antitumor Immunity
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      DOI: 10.1158/2326-6066.CIR-20-0973

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  165. www.sciencedirect.com www.sciencedirect.com
    Neuronal and astrocytic contributions to Huntington’s disease dissected with zinc finger protein transcriptional repressors
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      DOI: 10.1016/j.celrep.2022.111953

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  166. www.sciencedirect.com www.sciencedirect.com
    Transcriptomic profiling reveals sex-specific molecular signatures of adipose endothelial cells under obesogenic conditions
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      DOI: 10.1016/j.isci.2022.105811

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  167. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Sex differences in molecular rhythms in the human cortex
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      DOI: 10.1016/j.biopsych.2021.03.005

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  168. Dec 2022
  169. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Deciphering Transcriptional Networks during Human Cardiac Development
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      DOI: 10.3390/cells11233915

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  170. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An interoperability framework for multicentric breath metabolomic studies
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  171. Nov 2022
  172. www.sciencedirect.com www.sciencedirect.com
    Tip60-mediated H2A.Z acetylation promotes neuronal fate specification and bivalent gene activation
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      DOI: 10.1016/j.molcel.2022.11.002

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  173. faseb.onlinelibrary.wiley.com faseb.onlinelibrary.wiley.com
    The freezability of Mediterranean buffalo sperm is associated with lysine succinylation and lipid metabolism
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      DOI: 10.1096/fj.202201254R

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  174. link.springer.com link.springer.com
    The LncRNA MIAT is identified as a regulator of stemness-associated transcript in glioma
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      DOI: 10.1007/s11033-022-07962-5

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  175. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Extracellular vesicles from pristane-treated CD38-deficient mice express an anti-inflammatory neutrophil protein signature, which reflects the mild lupus severity elicited in these mice
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      DOI: 10.3389/fimmu.2022.1013236

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  176. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell RNA sequencing reveals different signatures of mesenchymal stromal cell pluripotent-like and multipotent populations
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  177. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A genomic and transcriptomic study toward breast cancer
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      DOI: 10.3389/fgene.2022.989565

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  178. Oct 2022
  179. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Muscle atrophy phenotype gene expression during spaceflight is linked to a metabolic crosstalk in both the liver and the muscle in mice.
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  180. link.springer.com link.springer.com
    Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression
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      DOI: 10.1186/s12967-022-03661-8

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  181. Sep 2022
  182. f1000research.com f1000research.com
    F1000Research Article: Identification of prognostic biomarkers of invasive ductal carcinoma by an integrated bioinformatics approach.
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      DOI: 10.12688/f1000research.123714.1

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  183. www.sciencedirect.com www.sciencedirect.com
    The molecular network of the proteasome machinery inhibition response is orchestrated by HSP70, revealing vulnerabilities in cancer cells
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      DOI: 10.1016/j.celrep.2022.111428

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  184. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    E2F1 as a potential prognostic and therapeutic biomarker by affecting tumor development and immune microenvironment in hepatocellular carcinoma
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      DOI: 10.21037/tcr-22-218

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  185. www.sciencedirect.com www.sciencedirect.com
    A small proportion of X-linked genes contribute to X chromosome upregulation in early embryos via BRD4-mediated transcriptional activation
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      DOI: 10.1016/j.cub.2022.08.059

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  186. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    NCOA4-mediated ferritinophagy is a pancreatic cancer dependency via maintenance of iron bioavailability for iron-sulfur cluster proteins
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      DOI: 10.1158/2159-8290.CD-22-0043

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  187. academic.oup.com academic.oup.com
    Comparative maternal protein profiling of mouse biparental and uniparental embryos
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      DOI: 10.1093/gigascience/giac084

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  188. www.sciencedirect.com www.sciencedirect.com
    Convergent cerebrospinal fluid proteomes and metabolic ontologies in humans and animal models of Rett syndrome
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  189. Aug 2022
  190. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Circulating microRNA: Myocardium-derived prenatal biomarker of ventricular septal defects
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    Global signalling network analysis of luminal T47D breast cancer cells in response to progesterone
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  192. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of CXCL10 and CXCL11 as the candidate genes involving the development of colitis-associated colorectal cancer
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  193. aacrjournals.org aacrjournals.org
    Proteomic mapping and targeting of mitotic pericentriolar material in tumors bearing centrosome amplification
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  194. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcription Elongation Machinery Is a Druggable Dependency and Potentiates Immunotherapy in Glioblastoma Stem Cells
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  195. Jul 2022
  196. elifesciences.org elifesciences.org
    HIF-1α induces glycolytic reprograming in tissue-resident alveolar macrophages to promote cell survival during acute lung injury
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    Molecular signatures underlying neurofibrillary tangle susceptibility in Alzheimer’s disease
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    Lung cancer survival prediction and biomarker identification with an ensemble machine learning analysis of tumor core biopsy metabolomic data
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    Protocol for establishing a protein-protein interaction network using tandem affinity purification followed by mass spectrometry in mammalian cells
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    A Metabolic Regulatory Network for the Caenorhabditis elegans intestine
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    Multiomics reveal the central role of pentose phosphate pathway in resident thymic macrophages to cope with efferocytosis-associated stress
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    Extracellular vesicles from thyroid cancer harbor a functional machinery involved in extracellular matrix remodeling
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    A systematic characterization of microglia-like cell occurrence during retinal organoid differentiation.
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    Drosophila gustatory projections are segregated by taste modality and connectivity
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    A basement membrane discovery pipeline uncovers network complexity, regulators, and human disease associations
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      DOI: 10.1126/sciadv.abn2265

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    High-intensity interval training remodels the proteome and acetylome of human skeletal muscle
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    A Whole Transcriptome Analysis in Peripheral Blood Suggests That Energy Metabolism and Inflammation Are Involved in Major Depressive Disorder
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    Pan-Cancer Single-Cell Analysis Reveals the Core Factors and Pathway in Specific Cancer Stem Cells of Upper Gastrointestinal Cancer
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  211. May 2022
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    Brucella activates the host RIDD pathway to subvert BLOS1-directed immune defense
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  213. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A bidirectional switch in the Shank3 phosphorylation state biases synapses toward up- or downscaling
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  214. Apr 2022
  215. www.sciencedirect.com www.sciencedirect.com
    Trans-omics analysis of insulin action reveals a cell growth sub-network which co-regulates anabolic processes
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    Transcriptome Analysis in Hippocampus of Rats Prenatally Exposed to Valproic Acid and Effects of Intranasal Treatment of Oxytocin
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    Isoforms of the orphan nuclear receptor COUP-TFII differentially modulate pancreatic cancer progression
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      DOI: 10.3892/ijo.2022.5345

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  218. www.nature.com www.nature.com
    CHMP2A regulates tumor sensitivity to natural killer cell-mediated cytotoxicity
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      DOI: 10.1038/s41467-022-29469-0

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  219. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Proteomic-Based Machine Learning Analysis Reveals PYGB as a Novel Immunohistochemical Biomarker to Distinguish Inverted Urothelial Papilloma From Low-Grade Papillary Urothelial Carcinoma With Inverted Growth
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  220. aacrjournals.org aacrjournals.org
    Lactate rewires lipid metabolism and sustains a metabolic-epigenetic axis in prostate cancer
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      DOI: 10.1158/0008-5472.CAN-21-0914

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  221. Mar 2022
  222. www.sciencedirect.com www.sciencedirect.com
    Functional interactomes of the Ebola virus polymerase identified by proximity proteomics in the context of viral replication
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      DOI: 10.1016/j.celrep.2022.110544

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    Causal biological network models for reactive astrogliosis: a systems approach to neuroinflammation
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      DOI: 10.1038/s41598-022-07651-0

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  224. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
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      DOI: 10.1111/bph.15697

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  225. Feb 2022
  226. www.sciencedirect.com www.sciencedirect.com
    Gene architecture directs splicing outcome in separate nuclear spatial regions
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      DOI: 10.1016/j.molcel.2022.02.001

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    Widespread discrepancy in Nnt genotypes and genetic backgrounds complicates granzyme A and other knockout mouse studies
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  228. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Expression and regulatory network of miRNAs in head and neck squamous cell carcinoma
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      DOI: 10.21037/tcr-20-1145

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  229. Jan 2022
  230. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    Amlodipine, an anti-hypertensive drug, alleviates non-alcoholic fatty liver disease by modulating gut microbiota
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      DOI: 10.1111/bph.15768

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