127 Matching Annotations
  1. Oct 2025
  2. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    plastiC: A pipeline for recovery and characterization of plastid genomes from metagenomic datasets
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    pmc.ncbi.nlm.nih.gov/articles/PMC12498322/
  3. www.nature.com www.nature.com
    The Panoptes system uses decoy cyclic nucleotides to defend against phage
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    nature.com/articles/s41586-025-09557-z
  4. Sep 2025
  5. www.sciencedirect.com www.sciencedirect.com
    Functional consequences of reductive protein evolution in a minimal eukaryotic genome
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    sciencedirect.com/science/article/pii/S2211124725011040
  6. Aug 2025
  7. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Telomere-to-telomere African wild rice (Oryza longistaminata) reference genome reveals segmental and structural variation
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    pmc.ncbi.nlm.nih.gov/articles/PMC12360840/
  8. www.sciencedirect.com www.sciencedirect.com
    A unified cell atlas of vascular plants reveals cell-type foundational genes and accelerates gene discovery
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    sciencedirect.com/science/article/pii/S009286742500858X
  9. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    PeptideMiner—neuropeptide discovery across the animal kingdom
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    pmc.ncbi.nlm.nih.gov/articles/PMC12343078/
  10. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Evolutionarily diverse caveolins share a common structural framework built around amphipathic disks
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    pmc.ncbi.nlm.nih.gov/articles/PMC12330381/
  11. Jun 2025
  12. rupress.org rupress.org
    Gut dysbiosis from high-salt diet promotes glioma via propionate-mediated TGF-β activation
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    rupress.org/jem/article/222/8/e20241135/277968/Gut-dysbiosis-from-high-salt-diet-promotes-glioma
  13. www.sciencedirect.com www.sciencedirect.com
    Repeated duplications and losses shaped SMC complex evolution from archaeal ancestors to modern eukaryotes
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    sciencedirect.com/science/article/pii/S2211124725006266
  14. 52.53.155.43 52.53.155.43
    PDF-html.html
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    52.53.155.43/e04e74c2598ab754b1f531f62f1399ba435a74bd/PDF-html.html
  15. www.cell.com www.cell.com
    Prevalence and environmental abundance of the TSET complex in cosmopolitan algal groups
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    cell.com/iscience/fulltext/S2589-0042(25)00940-X
  16. elifesciences.org elifesciences.org
    Structure, function and assembly of soybean primary cell wall cellulose synthases
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    elifesciences.org/reviewed-preprints/96704v2
  17. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of Pinus massoniana provides insights into conifer adaptive evolution
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    pmc.ncbi.nlm.nih.gov/articles/PMC12122422/
  18. Apr 2025
  19. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The molecular basis of octocoral calcification revealed by genome and skeletal proteome analyses
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    pmc.ncbi.nlm.nih.gov/articles/PMC11959691/
  20. Mar 2025
  21. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Genomic and transcriptomic analyses of Heteropoda venatoria reveal the expansion of P450 family for starvation resistance in spiders
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    pmc.ncbi.nlm.nih.gov/articles/PMC11927401/
  22. www.nature.com www.nature.com
    Sporophyte-directed gametogenesis in Arabidopsis
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    nature.com/articles/s41477-025-01932-y
  23. www.sciencedirect.com www.sciencedirect.com
    Diplonemid protists possess exotic endomembrane machinery, impacting models of membrane trafficking in modern and ancient eukaryotes
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    sciencedirect.com/science/article/pii/S0960982225001952
  24. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Lineage-Specific Class-A GPCR Dynamics Reflect Diverse Chemosensory Adaptations in Lophotrochozoa
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    pmc.ncbi.nlm.nih.gov/articles/PMC11886862/
  25. Jan 2025
  26. f1000research.com f1000research.com
    F1000Research Article: Isolation and complete genome sequence of <i>Citrobacter </i>bacteriophage Ursula.
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    f1000research.com/articles/14-86
  27. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Diaci v3.0: chromosome-level assembly, de novo transcriptome, and manual annotation of Diaphorina citri, insect vector of Huanglongbing
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    pmc.ncbi.nlm.nih.gov/articles/PMC11659978/
  28. www.sciencedirect.com www.sciencedirect.com
    Multiple plastid losses within photosynthetic stramenopiles revealed by comprehensive phylogenomics
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    sciencedirect.com/science/article/pii/S0960982224016324
  29. Dec 2024
  30. 52.53.155.43 52.53.155.43
    PDF-html.html
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    52.53.155.43/7ccb4c5104f3067c66d81bce354f2a4cf02941b2/PDF-html.html
  31. www.sciencedirect.com www.sciencedirect.com
    Tubulin sequence divergence is associated with the use of distinct microtubule regulators
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    sciencedirect.com/science/article/pii/S096098222401563X
  32. www.sciencedirect.com www.sciencedirect.com
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
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    sciencedirect.com/science/article/pii/S0092867424012728
  33. Sep 2024
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Isolation and complete genome sequence of Aeromonas bacteriophage Gekk3-15
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    ncbi.nlm.nih.gov/pmc/articles/PMC11372344/
  35. Aug 2024
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first high-altitude autotetraploid haplotype-resolved genome assembled (Rhododendron nivale subsp. boreale) provides new insights into mountaintop adaptation
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    ncbi.nlm.nih.gov/pmc/articles/PMC11304948/
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A trade-off in evolution: the adaptive landscape of spiders without venom glands
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    ncbi.nlm.nih.gov/pmc/articles/PMC11299198/
  38. Jul 2024
  39. www.biorxiv.org www.biorxiv.org
    Evolutionary Dynamics of Lineage-Specific Class-A GPCR Subsets Reveal Widespread Chemosensory Roles and Adaptations in Lophotrochozoa
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    biorxiv.org/content/10.1101/2024.07.14.603414v1
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A ghost moth olfactory prototype of the lepidopteran sex communication
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    ncbi.nlm.nih.gov/pmc/articles/PMC11258902/
  41. May 2024
  42. 52.53.155.43 52.53.155.43
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
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    52.53.155.43/cd1f9c7be80d56e211920ba04afd056c82fa391f/2024.02.19.579948.full-html.html
  43. Apr 2024
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Large-scale genomic survey with deep learning-based method reveals strain-level phage specificity determinants
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    ncbi.nlm.nih.gov/pmc/articles/PMC11034027/
  45. www.cell.com www.cell.com
    Structural basis of ligand specificity and channel activation in an insect gustatory receptor
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    cell.com/cell-reports/fulltext/S2211-1247(24)00363-2
  46. Mar 2024
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome of the poultry shaft louse Menopon gallinae provides insight into the host-switching and adaptive evolution of parasitic lice
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    ncbi.nlm.nih.gov/pmc/articles/PMC10904027/
  48. Feb 2024
  49. www.sciencedirect.com www.sciencedirect.com
    Ancestral genome reconstruction enhances transposable element annotation by identifying degenerate integrants
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    sciencedirect.com/science/article/pii/S2666979X24000247
  50. Jan 2024
  51. dx.doi.org dx.doi.org
    Reappraisal of the DNA phosphorothioate modification machinery: uncovering neglected functional modalities and identification of new counter-invader defense systems
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    dx.doi.org/10.1093/nar/gkad1213
  52. Nov 2023
  53. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Establishing an early indicator for data sharing and reuse
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    onlinelibrary.wiley.com/doi/10.1002/leap.1586
  54. Oct 2023
  55. 52.53.155.43 52.53.155.43
    Nitric oxide feedback to ciliary photoreceptor cells gates a UV avoidance circuit
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    52.53.155.43/2fdc085e8b336dc8ab2ad484f9c990582da3e65b/2023.08.02.551600v1.full-html.html
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level assembly supports genome-wide investigation of the DMRT gene family in the golden mussel (Limnoperna fortunei)
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    ncbi.nlm.nih.gov/pmc/articles/PMC10541798/
  57. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Construction and analysis of the chromosome-level haplotype-resolved genomes of two Crassostrea oyster congeners: Crassostrea angulata and Crassostrea gigas
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    ncbi.nlm.nih.gov/pmc/articles/PMC10546077/
  58. Sep 2023
  59. link.springer.com link.springer.com
    Maize heat shock proteins—prospection, validation, categorization and in silico analysis of the different ZmHSP families
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    link.springer.com/article/10.1007/s44154-023-00104-2
  60. Aug 2023
  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale assembly of the yellow mealworm genome
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    ncbi.nlm.nih.gov/pmc/articles/PMC10445852/
  62. Jun 2023
  63. www.sciencedirect.com www.sciencedirect.com
    Evolutionary analysis of cellular reduction and anaerobicity in the hyper-prevalent gut microbe Blastocystis
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    sciencedirect.com/science/article/pii/S0960982223006206
  64. May 2023
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    High-resolution structures with bound Mn2+ and Cd2+ map the metal import pathway in an Nramp transporter
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    ncbi.nlm.nih.gov/pmc/articles/PMC10185341/
  66. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of an Australian native grass species reveals a recent whole-genome duplication and biased gene retention of genes involved in stress response
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    ncbi.nlm.nih.gov/pmc/articles/PMC10176504/
  67. www.sciencedirect.com www.sciencedirect.com
    Bacterial NLR-related proteins protect against phage
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    sciencedirect.com/science/article/pii/S0092867423004117
  68. Mar 2023
  69. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the deep-sea coral Lophelia pertusa
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    ncbi.nlm.nih.gov/pmc/articles/PMC10022433/
  70. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first Antechinus reference genome provides a resource for investigating the genetic basis of semelparity and age-related neuropathologies
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    ncbi.nlm.nih.gov/pmc/articles/PMC9631953/
  71. gigabytejournal.com gigabytejournal.com
    Genome assembly of the numbat (Myrmecobius fasciatus), the only termitivorous marsupial
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    gigabytejournal.com/articles/47
  72. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read assemblies reveal structural diversity in genomes of organelles – an example with Acacia pycnantha
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650277/
  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The genome of a giant (trevally): Caranx ignobilis
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    ncbi.nlm.nih.gov/pmc/articles/PMC9694125/
  74. Feb 2023
  75. academic.oup.com academic.oup.com
    Parvovirus dark matter in the cloaca of wild birds
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad001/7025321
  76. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Macrophage migration inhibitory factor MtMIF3 prevents the premature aging of Medicago truncatula nodules
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    onlinelibrary.wiley.com/doi/10.1111/pce.14515
  77. www.mdpi.com www.mdpi.com
    Genome Assembly and Comparative Analysis of the Egg Parasitoid Wasp Trichogramma dendrolimi Shed Light on the Composition and Evolution of Olfactory Receptors and Venoms
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    mdpi.com/2075-4450/14/2/144
  78. Jan 2023
  79. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic and proteomic analyses provide insights into host adaptation of a bamboo-feeding aphid
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    ncbi.nlm.nih.gov/pmc/articles/PMC9874943/
  80. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mapping the FtsQBL divisome components in bacterial NTD pathogens as potential drug targets
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    ncbi.nlm.nih.gov/pmc/articles/PMC9846249/
  81. www.biorxiv.org www.biorxiv.org
    A chromosome-scale assembly for tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes
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    biorxiv.org/content/10.1101/2023.01.10.523438v1
  82. Nov 2022
  83. academic.oup.com academic.oup.com
    What the Phage: a scalable workflow for the identification and analysis of phage sequences
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac110/6833029
  84. academic.oup.com academic.oup.com
    High-quality genome assembles from key Hawaiian coral species
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac098/6815755
  85. Sep 2022
  86. www.sciencedirect.com www.sciencedirect.com
    Genomic analysis reveals cryptic diversity in aphelids and sheds light on the emergence of Fungi
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    sciencedirect.com/science/article/pii/S0960982222013938
  87. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of key endosymbiont genes may facilitate early host control of the chromatophore in Paulinella
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    ncbi.nlm.nih.gov/pmc/articles/PMC9450145/
  88. Aug 2022
  89. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The evolution of a counter-defense mechanism in a virus constrains its host range
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    ncbi.nlm.nih.gov/pmc/articles/PMC9391042/
  90. Jul 2022
  91. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome of the booklouse, Liposcelis brunnea, provides insight into louse evolution and environmental stress adaptation
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    ncbi.nlm.nih.gov/pmc/articles/PMC9295366/
  92. Jun 2022
  93. academic.oup.com academic.oup.com
    Genomes and demographic histories of the endangered Bretschneidera sinensis (Akaniaceae)
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac050/6608505
  94. www.sciencedirect.com www.sciencedirect.com
    A light-sensing system in the common ancestor of the fungi
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    sciencedirect.com/science/article/pii/S0960982222007965
  95. www.sciencedirect.com www.sciencedirect.com
    Anti-CRISPR prediction using deep learning reveals an inhibitor of Cas13b nucleases
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    sciencedirect.com/science/article/pii/S1097276522004373
  96. May 2022
  97. academic.oup.com academic.oup.com
    Chromosome‐level genome assembly of the black widow spider Latrodectus elegans illuminates composition and evolution of venom and silk proteins
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac049/6593146
  98. Mar 2022
  99. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Aerobic Methoxydotrophy: Growth on Methoxylated Aromatic Compounds by Methylobacteriaceae
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    ncbi.nlm.nih.gov/pmc/articles/PMC8963497/
  100. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Horizontal Transposon Transfer and Its Implications for the Ancestral Ecology of Hydrophiine Snakes
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    ncbi.nlm.nih.gov/pmc/articles/PMC8872380/
  101. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Maelstrom functions in the production of Siwi-piRISC capable of regulating transposons in Bombyx germ cells
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    ncbi.nlm.nih.gov/pmc/articles/PMC8881725/
  102. Oct 2021
  103. www.sciencedirect.com www.sciencedirect.com
    Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes
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    sciencedirect.com/science/article/pii/S0960982221013646
  104. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    On the diversity of F420 ‐dependent oxidoreductases: A sequence‐ and structure‐based classification
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    ncbi.nlm.nih.gov/pmc/articles/PMC8518648/
  105. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of Components of the Hippo Pathway in Hydra and Potential Role of YAP in Cell Division and Differentiation
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    ncbi.nlm.nih.gov/pmc/articles/PMC8526868/
  106. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structural characterization of NrnC identifies unifying features of dinucleotidases
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    ncbi.nlm.nih.gov/pmc/articles/PMC8492067/
  107. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome assembly for the eastern fence lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology
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    ncbi.nlm.nih.gov/pmc/articles/PMC8486681/
  108. Aug 2021
  109. www.sciencedirect.com www.sciencedirect.com
    The 3D architecture and molecular foundations of de novo centriole assembly via bicentrioles
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    sciencedirect.com/science/article/pii/S0960982221010538
  110. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pseudomolecule-level assembly of the Chinese oil tree yellowhorn (Xanthoceras sorbifolium) genome
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    ncbi.nlm.nih.gov/pmc/articles/PMC6593361/
  111. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The genome assembly and annotation of yellowhorn (Xanthoceras sorbifolium Bunge)
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    ncbi.nlm.nih.gov/pmc/articles/PMC6593362/
  112. elifesciences.org elifesciences.org
    Untitled document
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    elifesciences.org/articles/16761
  113. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    ncbi.nlm.nih.gov/pmc/articles/PMC6302954/
  114. academic.oup.com academic.oup.com
    Untitled document
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    academic.oup.com/gigascience/article/8/4/giz023/5429687
  115. academic.oup.com academic.oup.com
    Untitled document
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    academic.oup.com/gigascience/article/7/12/giy143/5202446
  116. Jul 2021
  117. academic.oup.com academic.oup.com
    Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop
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    academic.oup.com/gigascience/article/8/12/giz129/5647371
  118. academic.oup.com academic.oup.com
    Hybrid de novo genome assembly of Chinese chestnut ( Castanea mollissima )
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    academic.oup.com/gigascience/article/8/9/giz112/5568369
  119. elifesciences.org elifesciences.org
    Formin-2 drives polymerisation of actin filaments enabling segregation of apicoplasts and cytokinesis in Plasmodium falciparum
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    elifesciences.org/articles/49030
  120. www.embopress.org www.embopress.org
    Endosome and Golgi‐associated degradation (EGAD) of membrane proteins regulates sphingolipid metabolism
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    A chromosomal-scale genome assembly of Tectona grandis reveals the importance of tandem gene duplication and enables discovery of genes in natural product biosynthetic pathways
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  123. Jun 2021
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    A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome
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    Bacterial death and TRADD-N domains help define novel apoptosis and immunity mechanisms shared by prokaryotes and metazoans
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  126. May 2021
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    Repurposing of synaptonemal complex proteins for kinetochores in Kinetoplastida
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  128. Mar 2021
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    Mitochondrial copper and phosphate transporter specificity was defined early in the evolution of eukaryotes
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  130. Feb 2021
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    Jumbo Phages: A Comparative Genomic Overview of Core Functions and Adaptions for Biological Conflicts
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  133. Sep 2020
  134. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
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    Generation of a chromosome-scale genome assembly of the insect-repellent terpenoid-producing Lamiaceae species, Callicarpa americana
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    Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C
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    Draft Genome of the Asian Buffalo Leech Hirudinaria manillensis
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  138. www.microbiologyresearch.org www.microbiologyresearch.org
    Mycoparasitism illuminated by genome and transcriptome sequencing of Coniothyrium minitans, an important biocontrol fungus of the plant pathogen Sclerotinia sclerotiorum
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  141. Jan 2020
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    Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
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    Trochodendron aralioides, the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research
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    Structures in multiple conformations reveal distinct transition metal and proton pathways in an Nramp transporter
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  145. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)
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    Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome
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  150. Nov 2018
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    A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities
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    Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola
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    The CLAVATA receptor FASCIATED EAR2 responds to distinct CLE peptides by signaling through two downstream effectors
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    Co-expression of xenopsin and rhabdomeric opsin in photoreceptors bearing microvilli and cilia.
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  161. Nov 2017
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    De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin
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    Novel Predators Reshape Holozoan Phylogeny and Reveal the Presence of a Two-Component Signaling System in the Ancestor of Animals
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  164. journal.frontiersin.org journal.frontiersin.org
    Comparative Analysis of Ralstonia solanacearum Methylomes
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    The AP-2 complex has a specialized clathrin-independent role in apical endocytosis and polar growth in fungi
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  166. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Verrucomicrobia LexA-Binding Motif: Insights into the Evolutionary Dynamics of the SOS Response
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    Origin of a folded repeat protein from an intrinsically disordered ancestor
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  168. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A widely employed germ cell marker is an ancient disordered protein with reproductive functions in diverse eukaryotes
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