241 Matching Annotations
  1. Last 7 days
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multiple approaches converge on three biological subtypes of meningioma and extract new insights from published studies
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    1. scibot 21 Aug 2024
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      DOI: 10.1126/sciadv.abm6247

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    ncbi.nlm.nih.gov/pmc/articles/PMC11313601/
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    A trade-off in evolution: the adaptive landscape of spiders without venom glands
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    1. scibot 19 Aug 2024
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      DOI: 10.1093/gigascience/giae048

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    ncbi.nlm.nih.gov/pmc/articles/PMC11299198/
  4. Jul 2024
  5. www.sciencedirect.com www.sciencedirect.com
    BACH1 inhibits senescence, obesity, and short lifespan by ferroptotic FGF21 secretion
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    1. scibot 23 Jul 2024
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      DOI: 10.1016/j.celrep.2024.114403

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    sciencedirect.com/science/article/pii/S2211124724007319
  6. www.cell.com www.cell.com
    Proteobacteria impair anti-tumor immunity in the omentum by consuming arginine
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    1. scibot 18 Jul 2024
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      DOI: 10.1016/j.chom.2024.06.003

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    cell.com/cell-host-microbe/abstract/S1931-3128(24)00197-5
  7. Jun 2024
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptional response of the heart to vagus nerve stimulation
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    1. scibot 08 Jun 2024
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      DOI: 10.6084/m9.figshare.24449590

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    ncbi.nlm.nih.gov/pmc/articles/PMC7616044/
  9. May 2024
  10. www.sciencedirect.com www.sciencedirect.com
    CDK7 kinase activity promotes RNA polymerase II promoter escape by facilitating initiation factor release
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    1. scibot 31 May 2024
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      DOI: 10.1016/j.molcel.2024.05.007

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    sciencedirect.com/science/article/pii/S1097276524004003
  11. 52.53.155.43 52.53.155.43
    ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF
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    1. scibot 29 May 2024
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      DOI: 10.1101/2024.03.08.583864

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    2. scibot 29 May 2024
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      DOI: 10.1101/2024.03.08.583864

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    52.53.155.43/18a5f967080cacc79c7f5cca9d1b0be744600675/2024.03.08.583864v1.full-html.html
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    A phosphate transporter in VIPergic neurons of the suprachiasmatic nucleus gates locomotor activity during the light/dark transition in mice
    1
    1. scibot 14 May 2024
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      DOI: 10.1016/j.celrep.2024.114220

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    sciencedirect.com/science/article/pii/S2211124724005485
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Modeling Myeloma Dissemination In Vitro with hMSC-interacting Subpopulations of INA-6 Cells and Their Aggregation/Detachment Dynamics
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    1. scibot 01 May 2024
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      DOI: 10.1158/2767-9764.CRC-23-0411

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    ncbi.nlm.nih.gov/pmc/articles/PMC11057410/
  14. Apr 2024
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mapping brain gene coexpression in daytime transcriptomes unveils diurnal molecular networks and deciphers perturbation gene signatures
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    1. scibot 11 Apr 2024
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      DOI: 10.1016/j.neuron.2022.09.028

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    ncbi.nlm.nih.gov/pmc/articles/PMC9665885/
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    Telomere dysfunction alters intestinal stem cell dynamics to promote cancer
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    1. scibot 04 Apr 2024
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    sciencedirect.com/science/article/pii/S1534580724001886
  17. Mar 2024
  18. www.sciencedirect.com www.sciencedirect.com
    Chromosome level genome assembly and transcriptome analysis of E11 cells infected by tilapia lake virus
    1
    1. scibot 27 Mar 2024
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      DOI: 10.1016/j.fsi.2024.109505

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    sciencedirect.com/science/article/pii/S1050464824001499
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    Peripheral neuronal activation shapes the microbiome and alters gut physiology
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    1. scibot 22 Mar 2024
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    sciencedirect.com/science/article/pii/S221112472400281X
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    DNA methylation-environment interactions in the human genome
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    1. scibot 17 Mar 2024
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      DOI: 10.7554/eLife.89371

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    ncbi.nlm.nih.gov/pmc/articles/PMC10942648/
  21. Feb 2024
  22. 52.53.155.43 52.53.155.43
    Transcriptional response of the heart to vagus nerve stimulation
    2
    1. scibot 22 Feb 2024
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      DOI: 10.1152/physiolgenomics.00095.2023

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      DOI: 10.1152/physiolgenomics.00095.2023

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    52.53.155.43/1d74c7a9de06d0c8fd1f9db4b510dc74e1613524/kellett-et-al-2024-transcriptional-response-of-the-heart-to-vagus-nerve-stimulation-html.html
  23. www.sciencedirect.com www.sciencedirect.com
    Embigin deficiency leads to delayed embryonic lung development and high neonatal mortality in mice
    1
    1. scibot 08 Feb 2024
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    sciencedirect.com/science/article/pii/S2589004224001354
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Immunogenomic Landscape of Neuroendocrine Prostate Cancer
    1
    1. scibot 02 Feb 2024
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      DOI: 10.1158/1078-0432.CCR-22-3743

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    ncbi.nlm.nih.gov/pmc/articles/PMC10524949/
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Recurrent Phases of Strict Protein Limitation Inhibit Tumor Growth and Restore Lifespan in A Drosophila Intestinal Cancer Model
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10796089/
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    PUF partner interactions at a conserved interface shape the RNA-binding landscape and cell fate in Caenorhabditis elegans
    1
    1. scibot 02 Feb 2024
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      DOI: 10.1016/j.devcel.2024.01.005

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    sciencedirect.com/science/article/pii/S1534580724000054
  27. Jan 2024
  28. www.sciencedirect.com www.sciencedirect.com
    Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis
    1
    1. scibot 20 Jan 2024
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      DOI: 10.1016/j.cub.2023.12.050

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    sciencedirect.com/science/article/pii/S0960982223017505
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Unique transcriptional profiles underlie osteosarcomagenesis driven by different p53 mutants
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    1. scibot 18 Jan 2024
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      DOI: 10.1158/0008-5472.CAN-22-3464

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    ncbi.nlm.nih.gov/pmc/articles/PMC10524763/
  30. www.nature.com www.nature.com
    A new genomic framework to categorize pediatric acute myeloid leukemia
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    1. scibot 18 Jan 2024
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      DOI: 10.1038/s41588-023-01640-3

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    nature.com/articles/s41588-023-01640-3
  31. Dec 2023
  32. www.sciencedirect.com www.sciencedirect.com
    Ethanol induces replication fork stalling and membrane stress in immortalized laryngeal cells
    1
    1. scibot 21 Dec 2023
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      DOI: 10.1016/j.isci.2023.108564

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    sciencedirect.com/science/article/pii/S258900422302641X
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    m6A-Mediated Biogenesis of circDDIT4 Inhibits Prostate Cancer Progression by Sequestrating ELAVL1/HuR
    1
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      DOI: 10.1158/1541-7786.MCR-22-0271

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    ncbi.nlm.nih.gov/pmc/articles/PMC10690048/
  34. Nov 2023
  35. dx.doi.org dx.doi.org
    Population-specific Mutation Patterns in Breast Tumors from African American, European American, and Kenyan Patients
    1
    1. scibot 10 Nov 2023
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      DOI: 10.1158/2767-9764.CRC-23-0165

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    dx.doi.org/10.1158/2767-9764.CRC-23-0165
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Zinc Finger MYND-Type Containing 8 (ZMYND8) is epigenetically regulated in mutant Isocitrate Dehydrogenase 1 (IDH1) glioma to promote radioresistance
    1
    1. scibot 04 Nov 2023
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      DOI: 10.1158/1078-0432.CCR-22-1896

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    ncbi.nlm.nih.gov/pmc/articles/PMC10159884/
  37. Oct 2023
  38. www.sciencedirect.com www.sciencedirect.com
    Transcriptomic and proteomic profiling reveals distinct pathogenic features of peripheral non-classical monocytes in systemic lupus erythematosus
    1
    1. scibot 06 Oct 2023
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      DOI: 10.1016/j.clim.2023.109765

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    sciencedirect.com/science/article/pii/S1521661623005284
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    Prenatal alcohol alters inflammatory signatures in enteric portal tissues following adult-onset cerebrovascular ischemic stroke
    1
    1. scibot 01 Oct 2023
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      DOI: 10.1016/j.isci.2023.107920

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    sciencedirect.com/science/article/pii/S2589004223019971
  40. Aug 2023
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A comparison of the impact on neuronal transcriptome and cognition of rAAV5 transduction with three different doses in the mouse hippocampus
    1
    1. scibot 01 Aug 2023
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      DOI: 10.3389/fnmol.2023.1195327

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    ncbi.nlm.nih.gov/pmc/articles/PMC10375024/
  42. Jul 2023
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A network-based approach reveals long non-coding RNAs associated with disease activity in lupus nephritis: key pathways for flare and potential biomarkers to be used as liquid biopsies
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    1. scibot 21 Jul 2023
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      DOI: 10.3389/fimmu.2023.1203848

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    ncbi.nlm.nih.gov/pmc/articles/PMC10355154/
  44. www.sciencedirect.com www.sciencedirect.com
    Customization of the translational complex regulates mRNA-specific translation to control CNS regeneration
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    1. scibot 13 Jul 2023
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      DOI: 10.1016/j.neuron.2023.06.005

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    sciencedirect.com/science/article/pii/S0896627323004658
  45. Jun 2023
  46. 52.53.155.43 52.53.155.43
    can-22-3464-html.html
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      DOI: 10.1158/0008-5472.CAN-22-3464

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    52.53.155.43/8f4ba7cf674bbb2f5b6878f674808aab8499538e/can-22-3464-html.html
  47. link.springer.com link.springer.com
    Integrated clinical genomic analysis reveals xenobiotic metabolic genes are downregulated in meningiomas of current smokers
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      DOI: 10.1007/s11060-023-04359-7

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    link.springer.com/article/10.1007/s11060-023-04359-7
  48. www.sciencedirect.com www.sciencedirect.com
    Transcriptomic landscape of early hair follicle and epidermal development
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      DOI: 10.1016/j.celrep.2023.112643

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    sciencedirect.com/science/article/pii/S221112472300654X
  49. www.embopress.org www.embopress.org
    DOT1L bridges transcription and heterochromatin formation at mammalian pericentromeres
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    1. scibot 22 Jun 2023
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      DOI: 10.15252/embr.202256492

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    embopress.org/doi/10.15252/embr.202256492
  50. aacrjournals.org aacrjournals.org
    (R)-2-hydroxyglutarate inhibits KDM5 histone lysine demethylases to drive transformation in IDH-mutant cancers
    1
    1. scibot 10 Jun 2023
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      DOI: 10.1158/2159-8290.CD-22-0825

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    aacrjournals.org/cancerdiscovery/article/13/6/1478/726967/R-2-Hydroxyglutarate-Inhibits-KDM5-Histone-Lysine
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    Annexin A1 is a cell-intrinsic metalloregulator of zinc in human ILC2s
    1
    1. scibot 09 Jun 2023
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      DOI: 10.1016/j.celrep.2023.112610

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    sciencedirect.com/science/article/pii/S2211124723006216
  52. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Activating an Adaptive Immune Response with a Telomerase-mediated Telomere Targeting Therapeutic in Hepatocellular Carcinoma
    1
    1. scibot 03 Jun 2023
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      DOI: 10.1158/1535-7163.MCT-23-0039

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    ncbi.nlm.nih.gov/pmc/articles/PMC10233358/
  53. aacrjournals.org aacrjournals.org
    Enhanced glutaminolysis drives hypoxia-induced chemoresistance in pancreatic cancer
    1
    1. scibot 03 Jun 2023
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      DOI: 10.1158/0008-5472.CAN-22-2045

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  54. 52.53.155.43 52.53.155.43
    mct-23-0039-html.html
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  55. May 2023
  56. www.sciencedirect.com www.sciencedirect.com
    Mbnl2 loss alters novel context processing and impairs object recognition memory
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  57. Apr 2023
  58. aacrjournals.org aacrjournals.org
    Multi-substrate metabolic tracing reveals marked heterogeneity and dependency on fatty acid metabolism in human prostate cancer
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  59. www.sciencedirect.com www.sciencedirect.com
    Histone phosphorylation integrates the hepatic glucagon-PKA-CREB gluconeogenesis program in response to fasting
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  60. Mar 2023
  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    CHD1 promotes sensitivity to Aurora kinase inhibitors by suppressing interaction of AURKA with its coactivator TPX2
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  62. Feb 2023
  63. aacrjournals.org aacrjournals.org
    Single-cell analysis in lung adenocarcinoma implicates RNA editing in cancer innate immunity and patient prognosis
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    aacrjournals.org/cancerres/article/83/3/374/716183/Single-Cell-Analysis-in-Lung-Adenocarcinoma
  64. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated Genomic Analysis Identifies UBTF Tandem Duplications as a Recurrent Lesion in Pediatric Acute Myeloid Leukemia
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  65. www.biorxiv.org www.biorxiv.org
    YTHDC2 serves a distinct late role in spermatocytes during germ cell differentiation
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  66. Jan 2023
  67. www.sciencedirect.com www.sciencedirect.com
    MERR APEX-seq protocol for profiling the subcellular nascent transcriptome in mammalian cells
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    Rewiring of hormones and light response pathways underlies the inhibition of stomatal development in an amphibious plant Rorippa aquatica underwater
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  69. academic.oup.com academic.oup.com
    Integrating methylome and transcriptome signatures expands the molecular classification of the pituitary tumors
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  70. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome-level genome assembly of Dastarcus helophoroides provides insights into CYP450 genes expression upon insecticide exposure
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      DOI: 10.1002/ps.7319

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  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PRC2 Inactivating Mutations in Cancer Enhance Cytotoxic Response to DNMT1 Targeted Therapy via Enhanced Viral Mimicry
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  72. Dec 2022
  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of Protein-RNA Interactions in Mouse Testis Tissue Using fRIP
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  74. link.springer.com link.springer.com
    Towards resolution of the intron retention paradox in breast cancer
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  75. www.mdpi.com www.mdpi.com
    Human PSEN1 Mutant Glia Improve Spatial Learning and Memory in Aged Mice
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  76. Nov 2022
  77. aacrjournals.org aacrjournals.org
    Transcriptomic Correlates of Tumor Cell PD-L1 Expression and Response to Nivolumab Monotherapy in Metastatic Clear Cell Renal Cell Carcinoma
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      DOI: 10.1158/1078-0432.CCR-22-0923

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  78. Oct 2022
  79. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mapping brain gene coexpression in daytime transcriptomes unveils diurnal molecular networks and deciphers perturbation gene signatures
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      DOI: 10.1016/j.neuron.2022.09.028

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  80. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    P2Y6 receptor-mediated signaling amplifies TLR-induced pro-inflammatory responses in microglia
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  81. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Dicer1 deficient mice exhibit premature ageing and metabolic perturbations in adipocytes
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  82. Sep 2022
  83. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Combined – whole blood and skin fibroblasts- transcriptomic analysis in Psoriatic Arthritis reveals molecular signatures of activity, resistance and early response to treatment
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    A small proportion of X-linked genes contribute to X chromosome upregulation in early embryos via BRD4-mediated transcriptional activation
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  85. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Intracellular cholesterol pools regulate oncogenic signaling and epigenetic circuitries in Early T-cell Precursor Acute Lymphoblastic Leukemia
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  86. Aug 2022
  87. 52.53.155.43 52.53.155.43
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  88. 52.53.155.43 52.53.155.43
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  89. Jul 2022
  90. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    EGFR signaling activates intestinal stem cells by promoting mitochondrial biogenesis and β-oxidation
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  91. www.sciencedirect.com www.sciencedirect.com
    Spatiotemporal genomic analysis reveals distinct molecular features in recurrent stage I non-small cell lung cancers
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      DOI: 10.1016/j.celrep.2022.111047

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  92. www.cell.com www.cell.com
    Bacterial growth in multicellular aggregates leads to the emergence of complex life cycles
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  93. Jun 2022
  94. www.nature.com www.nature.com
    TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors
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      DOI: 10.1038/s41590-022-01232-z

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  95. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comprehensive surfaceome profiling to identify and validate novel cell-surface targets in osteosarcoma
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      DOI: 10.1158/1535-7163.MCT-21-0836

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    EED is required for mouse primordial germ cell differentiation in the embryonic gonad
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  97. www.sciencedirect.com www.sciencedirect.com
    Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine
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      DOI: 10.1016/j.molcel.2022.05.016

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  98. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells
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      DOI: 10.7554/eLife.71533

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  99. Apr 2022
  100. aacrjournals.org aacrjournals.org
    FREQUENCY AND GENOMIC ASPECTS OF INTRINSIC RESISTANCE TO VISMODEGIB IN LOCALLY ADVANCED BASAL CELL CARCINOMA
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      DOI: 10.1158/1078-0432.CCR-21-3764

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    aacrjournals.org/clincancerres/article/28/7/1422/682219/Frequency-and-Genomic-Aspects-of-Intrinsic
  101. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Presence of H3K4me3 on Paternally Expressed Genes of the Paternal Genome From Sperm to Implantation
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      DOI: 10.3389/fcell.2022.838684

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  102. Mar 2022
  103. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Hypertrophic chondrocytes serve as a reservoir for marrow-associated skeletal stem and progenitor cells, osteoblasts, and adipocytes during skeletal development
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    1. scibot 09 Mar 2022
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      DOI: 10.7554/eLife.76932

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  104. www.science.org www.science.org
    Multiple approaches converge on three biological subtypes of meningioma and extract new insights from published studies
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      DOI: 10.1126/sciadv.abm6247

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  105. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nonsense-mediated RNA decay is a unique vulnerability of cancer cells harboring SF3B1 or U2AF1 mutations
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      DOI: 10.1158/0008-5472.CAN-20-4016

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  106. www.sciencedirect.com www.sciencedirect.com
    Metabolic incorporation of electron-rich ribonucleosides enhances APEX-seq for profiling spatially restricted nascent transcriptome
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      DOI: 10.1016/j.chembiol.2022.02.005

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  107. Feb 2022
  108. www.nature.com www.nature.com
    Global mapping of RNA G-quadruplexes (G4-RNAs) using G4RP-seq
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      DOI: 10.1038/s41596-021-00671-6

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  109. www.sciencedirect.com www.sciencedirect.com
    Uninterrupted CAG repeat drives striatum-selective transcriptionopathy and nuclear pathogenesis in human Huntingtin BAC mice
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      DOI: 10.1016/j.neuron.2022.01.006

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  110. Jan 2022
  111. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    Modulation of the Human Pancreatic Ductal Adenocarcinoma Immune Microenvironment by Stereotactic Body Radiotherapy
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  112. www.sciencedirect.com www.sciencedirect.com
    Lipid droplet dynamics regulate adult muscle stem cell fate
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  113. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative transcriptomic analysis reveals translationally relevant processes in mouse models of malaria
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  114. Dec 2021
  115. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Transcriptome analysis reveals the contribution of oligodendrocyte and radial glia-derived cues for maintenance of microglia identity
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  116. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Regulatory T-cells inhibit microglia-induced pain hypersensitivity in female mice
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  117. academic.oup.com academic.oup.com
    Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles
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  118. Nov 2021
  119. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Disrupted PGR-B and ESR1 signaling underlies defective decidualization linked to severe preeclampsia
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  120. Oct 2021
  121. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multiscale analysis reveals that diet-dependent midgut plasticity emerges from alterations in both stem cell niche coupling and enterocyte size
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  122. Sep 2021
  123. www.sciencedirect.com www.sciencedirect.com
    Muscle-secreted neurturin couples myofiber oxidative metabolism and slow motor neuron identity
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    Transcriptional control of brain tumor stem cells by a carbohydrate binding protein
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  125. Aug 2021
  126. academic.oup.com academic.oup.com
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  127. www.sciencedirect.com www.sciencedirect.com
    Lymphocyte-Specific Chromatin Accessibility Pre-determines Glucocorticoid Resistance in Acute Lymphoblastic Leukemia
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  128. www.ncbi.nlm.nih.govhttp: www.ncbi.nlm.nih.govhttp:
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    Dysregulated oxalate metabolism is a driver and therapeutic target in atherosclerosis
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  131. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The COVIDome Explorer researcher portal
    1
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  132. link.springer.com link.springer.com
    BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing
    1
    1. scibot 03 Aug 2021
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      DOI: 10.1186/s13059-019-1671-x

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  134. elifesciences.org elifesciences.org
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  135. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  136. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  137. Jul 2021
  138. www.nature.com www.nature.com
    Severe head dysgenesis resulting from imbalance between anterior and posterior ontogenetic programs
    1
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  140. www.nature.com www.nature.com
    α-Ketoglutarate links p53 to cell fate during tumour suppression
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      DOI: 10.1038/s41586-019-1577-5

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  141. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Specialization of the Drosophila nuclear export family protein Nxf3 for piRNA precursor export
    1
    1. scibot 30 Jul 2021
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      DOI: 10.1101/gad.328690.119

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  142. link.springer.com link.springer.com
    Genome-wide association and differential expression analysis of salt tolerance in <Emphasis Type="Italic">Gossypium hirsutum</Emphasis> L at the germination stage
    1
    1. scibot 30 Jul 2021
      HTSeq

      DOI: 10.1186/s12870-019-1989-2

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  143. journals.plos.org journals.plos.org
    Desmoplasia and oncogene driven acinar-to-ductal metaplasia are concurrent events during acinar cell-derived pancreatic cancer initiation in young adult mice
    1
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      DOI: 10.1371/journal.pone.0221810

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  144. link.springer.com link.springer.com
    Mitochondrial genomic variation drives differential nuclear gene expression in discrete regions of Drosophila gene and protein interaction networks
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      HTSeq

      DOI: 10.1186/s12864-019-6061-y

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  145. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Transcriptome profiling of developing photoreceptor subtypes reveals candidate genes involved in avian photoreceptor diversification
    1
    1. scibot 30 Jul 2021
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      DOI: 10.1002/cne.23702

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    Activation Dynamics and Immunoglobulin Evolution of Pre-existing and Newly Generated Human Memory B cell Responses to Influenza Hemagglutinin
    1
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      RRID: SCR_005514

      DOI: 10.1016/j.immuni.2019.06.024

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  147. www.frontiersin.org www.frontiersin.org
    The Inducible Response of the Nematode Caenorhabditis elegans to Members of Its Natural Microbiota Across Development and Adult Life
    1
    1. scibot 29 Jul 2021
      HTSeq

      DOI: 10.3389/fmicb.2019.01793

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  148. www.mdpi.com www.mdpi.com
    Role of MYC-miR-29-B7-H3 in Medulloblastoma Growth and Angiogenesis
    1
    1. scibot 29 Jul 2021
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      DOI: 10.3390/jcm8081158

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  149. www.sciencedirect.com www.sciencedirect.com
    Translational Regulation of Non-autonomous Mitochondrial Stress Response Promotes Longevity
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      HTseq

      DOI: 10.1016/j.celrep.2019.06.078

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  150. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  151. www.sciencedirect.com www.sciencedirect.com
    The RNA-Binding Protein PUM2 Impairs Mitochondrial Dynamics and Mitophagy During Aging
    1
    1. scibot 28 Jul 2021
      HTSeq

      DOI: 10.1016/j.molcel.2018.11.034

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  152. www.sciencedirect.com www.sciencedirect.com
    Developmental Heterogeneity of Microglia and Brain Myeloid Cells Revealed by Deep Single-Cell RNA Sequencing
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      DOI: 10.1016/j.neuron.2018.12.006

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  153. europepmc.org europepmc.org
    The conserved RNA helicase YTHDC2 regulates the transition from proliferation to differentiation in the germline.
    2
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      RRID:SCR_005514

      DOI: 10.7554/eLife.26116

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      DOI: 10.7554/eLife.26116

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  154. www.sciencedirect.com www.sciencedirect.com
    Deregulated Expression of Mammalian lncRNA through Loss of SPT6 Induces R-Loop Formation, Replication Stress, and Cellular Senescence
    1
    1. scibot 27 Jul 2021
      HTseq

      DOI: 10.1016/j.molcel.2018.10.011

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  155. www.sciencedirect.com www.sciencedirect.com
    Acetylation of Cytidine in mRNA Promotes Translation Efficiency
    1
    1. scibot 27 Jul 2021
      HTSeq

      DOI: 10.1016/j.cell.2018.10.030

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  156. www.sciencedirect.com www.sciencedirect.com
    Spatiotemporal m(i)RNA Architecture and 3′ UTR Regulation in the C. elegans Germline
    1
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      HTSeq

      DOI: 10.1016/j.devcel.2018.10.005

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  157. www.sciencedirect.com www.sciencedirect.com
    Succinate Dehydrogenase Supports Metabolic Repurposing of Mitochondria to Drive Inflammatory Macrophages
    2
    1. scibot 27 Jul 2021
      HTSeq

      DOI: 10.1016/j.cell.2016.08.064

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  158. Jun 2021
  159. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    Activation of nuclear receptor PXR induces atherogenic lipids and PCSK9 through SREBP2‐mediated mechanism
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      DOI: 10.1111/bph.15433

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  160. www.sciencedirect.com www.sciencedirect.com
    Cytokinins initiate secondary growth in the Arabidopsis root through a set of LBD genes
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    sciencedirect.com/science/article/pii/S096098222100734X
  161. www.sciencedirect.com www.sciencedirect.com
    Sublayer- and cell-type-specific neurodegenerative transcriptional trajectories in hippocampal sclerosis
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  162. May 2021
  163. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
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  164. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Morphological and genomic shifts in mole-rat ‘queens’ increase fecundity but reduce skeletal integrity
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  165. Apr 2021
  166. www.sciencedirect.com www.sciencedirect.com
    Efficient RNA polymerase II pause release requires U2 snRNP function
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  167. www.sciencedirect.com www.sciencedirect.com
    Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls
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    Single-cell transcriptomics identifies gene expression networks driving differentiation and tumorigenesis in the human fallopian tube
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    Cellular mRNA triggers structural transformation of Ebola virus matrix protein VP40 to its essential regulatory form
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    Evidence for additive and synergistic action of mammalian enhancers during cell fate determination
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    Molecular pathways behind acquired obesity: adipose tissue and skeletal muscle multiomics in monozygotic twin pairs discordant for BMI
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    sciencedirect.com/science/article/pii/S2666379121000422
  172. Mar 2021
  173. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Seroconversion stages COVID19 into distinct pathophysiological states
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    ncbi.nlm.nih.gov/pmc/articles/PMC7963480/
  174. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Basis of specificity for a conserved and promiscuous chromatin remodeling protein
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  175. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Serial transplantation unmasks galectin-9 contribution to tumor immune escape in the MB49 murine model
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  176. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    EKLF/KLF1 expression defines a unique macrophage subset during mouse erythropoiesis
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  177. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Short-term exposure to intermittent hypoxia leads to changes in gene expression seen in chronic pulmonary disease
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  178. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia
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  179. Feb 2021
  180. elifesciences.org elifesciences.org
    Def6 regulates endogenous type-I interferon responses in osteoblasts and suppresses osteogenesis
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  181. www.cell.com www.cell.com
    Interferon-λ Mediates Non-redundant Front-Line Antiviral Protection against Influenza Virus Infection without Compromising Host Fitness
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      DOI: 10.1016/j.immuni.2017.04.025

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    cell.com/immunity/abstract/S1074-7613(17)30190-5
  182. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Identification of regenerative processes in neonatal spinal cord injury in the opossum (Monodelphis domestica), a transcriptomic study
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      DOI: 10.1002/cne.24994

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    onlinelibrary.wiley.com/doi/10.1002/cne.24994
  183. cancerres.aacrjournals.org cancerres.aacrjournals.org
    Transcriptional Activation of MYC-Induced Genes by GCN5 Promotes B-cell Lymphomagenesis
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      DOI: 10.1158/0008-5472.CAN-20-2379

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  184. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons
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  185. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila
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    ncbi.nlm.nih.gov/pmc/articles/PMC7870146/
  186. Jan 2021
  187. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Specific Neuroligin3–αNeurexin1 signaling regulates GABAergic synaptic function in mouse hippocampus
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      DOI: 10.7554/eLife.59545

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    ncbi.nlm.nih.gov/pmc/articles/PMC7758064/
  188. www.sciencedirect.com www.sciencedirect.com
    Charting Extracellular Transcriptomes in The Human Biofluid RNA Atlas
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      DOI: 10.1016/j.celrep.2020.108552

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    sciencedirect.com/science/article/pii/S2211124720315412
  189. Dec 2020
  190. www.cell.com www.cell.com
    Circadian VIPergic Neurons of the Suprachiasmatic Nuclei Sculpt the Sleep-Wake Cycle
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      DOI: 10.1016/j.neuron.2020.08.001

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    cell.com/neuron/fulltext/S0896-6273(20)30608-5
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    Large-scale Generation of Functional and Transplantable Hepatocytes and Cholangiocytes from Human Endoderm Stem Cells
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  192. Nov 2020
  193. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    A molecular map of lung neuroendocrine neoplasms
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      DOI: 10.1093/gigascience/giaa112

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  194. Sep 2020
  195. elifesciences.org elifesciences.org
    A human ESC-based screen identifies a role for the translated lncRNA LINC00261 in pancreatic endocrine differentiation
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  196. www.sciencedirect.com www.sciencedirect.com
    Non-Canonical Caspase Activity Antagonizes p38 MAPK Stress-Priming Function to Support Development
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      DOI: 10.1016/j.devcel.2020.03.015

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    Senescence-Induced Vascular Remodeling Creates Therapeutic Vulnerabilities in Pancreas Cancer
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      DOI: 10.1016/j.cell.2020.03.008

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  198. elifesciences.org elifesciences.org
    Transposase-assisted tagmentation of RNA/DNA hybrid duplexes
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    Postprandial Hypoglycemia in Patients after Gastric Bypass Surgery Is Mediated by Glucose-Induced IL-1β
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    Bacterial Nucleoside Catabolism Controls Quorum Sensing and Commensal-to-Pathogen Transition in the Drosophila Gut
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      DOI: 10.1016/j.chom.2020.01.025

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    Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression
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      DOI: 10.1016/j.immuni.2020.01.003

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  202. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Inhibition of the catalytic subunit of DNA‐dependent protein kinase (DNA‐PKcs) stimulates osteoblastogenesis by potentiating bone morphogenetic protein 2 (BMP2) responses
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      DOI: 10.1002/jcp.29927

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    OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature
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  204. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    INO80C Remodeler Maintains Genomic Stability by Preventing Promiscuous Transcription at Replication Origins
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    Immune Sensing of Synthetic, Bacterial, and Protozoan RNA by Toll-like Receptor 8 Requires Coordinated Processing by RNase T2 and RNase 2
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  206. www.cell.com www.cell.com
    Defective Mitochondrial Cardiolipin Remodeling Dampens HIF-1α Expression in Hypoxia
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      DOI: 10.1016/j.celrep.2018.09.057

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  207. Jan 2020
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    A Pathogen-Responsive Gene Cluster for Highly Modified Fatty Acids in Tomato
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      DOI: 10.1016/j.cell.2019.11.037

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  209. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell transcriptomes and whole-brain projections of serotonin neurons in the mouse dorsal and median raphe nuclei
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      DOI: 10.7554/eLife.49424

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    RNA 5-Methylcytosine Facilitates the Maternal-to-Zygotic Transition by Preventing Maternal mRNA Decay
    1
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      DOI: 10.1016/j.molcel.2019.06.033

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  211. elifesciences.org elifesciences.org
    The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs
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      DOI: 10.7554/eLife.46754

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    Naa10p Inhibits Beige Adipocyte-Mediated Thermogenesis through N-α-acetylation of Pgc1α
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      DOI: 10.1016/j.molcel.2019.07.026

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    TREM2 Acts Downstream of CD33 in Modulating Microglial Pathology in Alzheimer’s Disease
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    1. scibot 13 Jan 2020
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      DOI: 10.1016/j.neuron.2019.06.010

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  214. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The transcription factor odd-paired regulates temporal identity in transit-amplifying neural progenitors via an incoherent feed-forward loop
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    1. scibot 13 Jan 2020
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      DOI: 10.7554/eLife.46566

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    The piRNA Response to Retroviral Invasion of the Koala Genome
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      DOI: 10.1016/j.cell.2019.09.002

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    Atlas of Subcellular RNA Localization Revealed by APEX-Seq
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      DOI: 10.1016/j.cell.2019.05.027

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    FOXA2 Is Required for Enhancer Priming during Pancreatic Differentiation
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    1. scibot 13 Jan 2020
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      DOI: 10.1016/j.celrep.2019.06.034

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  218. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Conversion of random X-inactivation to imprinted X-inactivation by maternal PRC2
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.7554/eLife.44258

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    Single-Cell RNA-Seq Reveals Developmental Origins and Ontogenetic Stability of Neurexin Alternative Splicing Profiles
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.1016/j.celrep.2019.05.090

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    Yeast Sirtuin Family Members Maintain Transcription Homeostasis to Ensure Genome Stability
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    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.1016/j.celrep.2019.05.009

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    Distinct Immune Cell Populations Define Response to Anti-PD-1 Monotherapy and Anti-PD-1/Anti-CTLA-4 Combined Therapy
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    1. scibot 13 Jan 2020
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      DOI: 10.1016/j.ccell.2019.01.003

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  222. genomebiology.biomedcentral.com genomebiology.biomedcentral.com
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      DOI: 10.1186/s13059-019-1671-x

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  223. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.7554/eLife.43101

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      DOI: 10.1016/j.cell.2019.01.040

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  225. www.sciencedirect.com www.sciencedirect.com
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      DOI: 10.1016/j.celrep.2019.03.104

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  226. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Natural variation in sugar tolerance associates with changes in signaling and mitochondrial ribosome biogenesis
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    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.7554/eLife.40841

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  227. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping
    1
    1. scibot 12 Jan 2020
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      DOI: 10.1093/gigascience/giz027

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  228. Nov 2018
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    Identification of piRNA Binding Sites Reveals the Argonaute Regulatory Landscape of the C. elegans Germline
    1
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  230. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Metformin Targets Mitochondrial Electron Transport to Reduce Air-Pollution-Induced Thrombosis
    1
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    CRISPR Activation Screens Systematically Identify Factors that Drive Neuronal Fate and Reprogramming
    1
    1. scibot 05 Nov 2018
      HTseq

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  232. www.sciencedirect.com www.sciencedirect.com
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  233. www-sciencedirect-com.ezproxy.is.ed.ac.uk www-sciencedirect-com.ezproxy.is.ed.ac.uk
    CD8+ T Cell Priming in Established Chronic Viral Infection Preferentially Directs Differentiation of Memory-like Cells for Sustained Immunity
    1
    1. scibot 05 Nov 2018
      HTSeq

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  234. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Stage-Specific Transcription Factors Drive Astrogliogenesis by Remodeling Gene Regulatory Landscapes
    1
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  236. www.nature.com www.nature.com
    RANKL/RANK control Brca1 mutation-driven mammary tumors
    1
    1. scibot 05 Nov 2018
      HTSeq

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    nature.com/articles/cr201669
  237. www.sciencedirect.com www.sciencedirect.com
    Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @evieth

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  238. www.sciencedirect.com www.sciencedirect.com
    Neurons under T Cell Attack Coordinate Phagocyte-Mediated Synaptic Stripping
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

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    Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis
    1
    1. scibot 05 Nov 2018
      HTSeq

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  240. www.sciencedirect.com www.sciencedirect.com
    A Nuclear Export Block Triggers the Decay of Newly Synthesized Polyadenylated RNA
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @evieth

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    APD-Containing Cyclolipodepsipeptides Target Mitochondrial Function in Hypoxic Cancer Cells
    1
    1. scibot 05 Nov 2018
      HTSeq

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  242. www.sciencedirect.com www.sciencedirect.com
    Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

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