143 Matching Annotations
  1. Jan 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality chromosomal genome assembly of the sea cucumber Chiridota heheva and its hydrothermal adaptation
    1
    1. scibot 05 Jan 2024
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giad107

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    ncbi.nlm.nih.gov/pmc/articles/PMC10764150/
  3. Dec 2023
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the Pacific geoduck Panopea generosa reveals major inter- and intrachromosomal rearrangements and substantial expansion of the copine gene family
    1
    1. scibot 21 Dec 2023
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giad105

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    ncbi.nlm.nih.gov/pmc/articles/PMC10729735/
  5. Oct 2023
  6. www.sciencedirect.com www.sciencedirect.com
    The evolution of endoparasitism and complex life cycles in parasitic platyhelminths
    1
    1. scibot 28 Oct 2023
      RRID:SCR_006086

      DOI: 10.1016/j.cub.2023.08.064

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    sciencedirect.com/science/article/pii/S0960982223011442
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level reference genome of tetraploid Isoetes sinensis provides insights into evolution and adaption of lycophytes
    1
    1. scibot 05 Oct 2023
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giad079

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    ncbi.nlm.nih.gov/pmc/articles/PMC10541799/
  8. Sep 2023
  9. www.sciencedirect.com www.sciencedirect.com
    Characterization of the male-specific region containing the candidate sex-determining gene in Amur catfish (Silurus asotus) using third-generation- and pool-sequencing data
    1
    1. scibot 27 Sep 2023
      RRID:SCR_006086

      DOI: 10.1016/j.ijbiomac.2023.125908

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    sciencedirect.com/science/article/pii/S0141813023028039
  10. Aug 2023
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Phylogeny-wide analysis of G-protein coupled receptors in social amoebas and implications for the evolution of multicellularity
    1
    1. scibot 31 Aug 2023
      RRID:SCR_006086

      DOI: 10.12688/openreseurope.15250.2

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    ncbi.nlm.nih.gov/pmc/articles/PMC10445921/
  12. Jul 2023
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic analyses provide insights into the evolution and salinity adaptation of halophyte Tamarix chinensis
    1
    1. scibot 29 Jul 2023
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giad053

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    ncbi.nlm.nih.gov/pmc/articles/PMC10370455/
  14. www.sciencedirect.com www.sciencedirect.com
    Bacterial clade-specific analysis identifies distinct epithelial responses in inflammatory bowel disease
    1
    1. scibot 25 Jul 2023
      RRID:SCR_006086

      DOI: 10.1016/j.xcrm.2023.101124

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    sciencedirect.com/science/article/pii/S2666379123002525
  15. www.sciencedirect.com www.sciencedirect.com
    Plant myo-inositol transport influences bacterial colonization phenotypes
    1
    1. scibot 07 Jul 2023
      RRID: SCR_006086

      DOI: 10.1016/j.cub.2023.06.057

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    sciencedirect.com/science/article/pii/S0960982223008424
  16. Jun 2023
  17. www.sciencedirect.com www.sciencedirect.com
    Evolutionary analysis of cellular reduction and anaerobicity in the hyper-prevalent gut microbe Blastocystis
    1
    1. scibot 02 Jun 2023
      RRID:SCR_006086

      DOI: 10.1016/j.cub.2023.05.025

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    sciencedirect.com/science/article/pii/S0960982223006206
  18. May 2023
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of an Australian native grass species reveals a recent whole-genome duplication and biased gene retention of genes involved in stress response
    1
    1. scibot 16 May 2023
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giad034

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    ncbi.nlm.nih.gov/pmc/articles/PMC10176504/
  20. Apr 2023
  21. www.sciencedirect.com www.sciencedirect.com
    Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population
    1
    1. scibot 29 Apr 2023
      RRID:SCR_006086

      DOI: 10.1016/j.cub.2023.04.011

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    sciencedirect.com/science/article/pii/S0960982223004591
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Molecular mechanisms underlying hematophagia revealed by comparative analyses of leech genomes
    1
    1. scibot 14 Apr 2023
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giad023

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    ncbi.nlm.nih.gov/pmc/articles/PMC10087013/
  23. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
    1
    1. scibot 11 Apr 2023
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giad022

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
  24. Mar 2023
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the deep-sea coral Lophelia pertusa
    1
    1. scibot 22 Mar 2023
      RRID:SCR_006086

      DOI: 10.46471/gigabyte.78

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    ncbi.nlm.nih.gov/pmc/articles/PMC10022433/
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research
    1
    1. scibot 22 Mar 2023
      RRID:SCR_006086

      DOI: 10.46471/gigabyte.71

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    ncbi.nlm.nih.gov/pmc/articles/PMC10027117/
  27. elifesciences.org elifesciences.org
    Nitrogenase resurrection and the evolution of a singular enzymatic mechanism
    1
    1. scibot 04 Mar 2023
      RRID:SCR_006086

      DOI: 10.7554/eLife.85003

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    elifesciences.org/articles/85003
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta)
    1
    1. scibot 02 Mar 2023
      RRID:SCR_006086

      DOI: 10.46471/gigabyte.8

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    ncbi.nlm.nih.gov/pmc/articles/PMC9631980/
  29. Feb 2023
  30. f1000research.com f1000research.com
    F1000Research Article: The complete mitochondrial genome of the hybrid snow crab <i>Chionoecetes opilio</i> (♀) &times; <i>C. japonicus</i> (♂) (Crustacea: Decapoda: Majoidea) and its phylogenetic analysis.
    1
    1. scibot 23 Feb 2023
      RRID:SCR_006086

      DOI: 10.12688/f1000research.129413.1

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    f1000research.com/articles/12-195
  31. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome assembly of Ostrea denselamellosa provides initial insights into its evolution
    1
    1. scibot 16 Feb 2023
      RRID:SCR_006086

      DOI: 10.1016/j.ygeno.2023.110582

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    sciencedirect.com/science/article/pii/S0888754323000265
  32. www.mdpi.com www.mdpi.com
    Genome Assembly and Comparative Analysis of the Egg Parasitoid Wasp Trichogramma dendrolimi Shed Light on the Composition and Evolution of Olfactory Receptors and Venoms
    1
    1. scibot 04 Feb 2023
      RRID:SCR_006086

      DOI: 10.3390/insects14020144

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    mdpi.com/2075-4450/14/2/144
  33. elifesciences.org elifesciences.org
    A choline-releasing glycerophosphodiesterase essential for phosphatidylcholine biosynthesis and blood stage development in the malaria parasite
    1
    1. scibot 02 Feb 2023
      RRID:SCR_006086

      DOI: 10.7554/eLife.82207

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    elifesciences.org/articles/82207
  34. Jan 2023
  35. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome-level genome assembly of Dastarcus helophoroides provides insights into CYP450 genes expression upon insecticide exposure
    1
    1. scibot 10 Jan 2023
      SCR_006086

      DOI: 10.1002/ps.7319

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    onlinelibrary.wiley.com/doi/10.1002/ps.7319
  36. Dec 2022
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization
    1
    1. scibot 16 Dec 2022
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giac120

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    ncbi.nlm.nih.gov/pmc/articles/PMC9730501/
  38. www.frontiersin.org www.frontiersin.org
    Occurrence of mcr-1 and mcr-2 colistin resistance genes in porcine Escherichia coli isolates (2010–2020) and genomic characterization of mcr-2-positive E. coli
    1
    1. scibot 13 Dec 2022
      RRID:SCR_006086

      DOI: 10.3389/fmicb.2022.1076315

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    frontiersin.org/articles/10.3389/fmicb.2022.1076315/full
  39. Sep 2022
  40. academic.oup.com academic.oup.com
    Comparative genome and evolution analyses of an endangered stony coral species Dendrophyllia cribrosa near Dokdo Islands in the East Sea
    1
    1. scibot 17 Sep 2022
      RRID:SCR_006086

      DOI: 10.1093/gbe/evac132

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    academic.oup.com/gbe/article/14/9/evac132/6677079
  41. Aug 2022
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Arbuscular Mycorrhizal Fungi Taxa Show Variable Patterns of Micro-Scale Dispersal in Prairie Restorations
    1
    1. scibot 11 Aug 2022
      RRID:SCR_006086

      DOI: 10.3389/fmicb.2022.827293

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    ncbi.nlm.nih.gov/pmc/articles/PMC9355535/
  43. Jul 2022
  44. academic.oup.com academic.oup.com
    Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis
    1
    1. scibot 06 Jul 2022
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giac057

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac057/6619298
  45. May 2022
  46. academic.oup.com academic.oup.com
    Chromosome‐level genome assembly of the black widow spider Latrodectus elegans illuminates composition and evolution of venom and silk proteins
    1
    1. scibot 28 May 2022
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giac049

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac049/6593146
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Message in a Bottle—Metabarcoding enables biodiversity comparisons across ecoregions
    1
    1. scibot 05 May 2022
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giac040

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    ncbi.nlm.nih.gov/pmc/articles/PMC9049109/
  48. Apr 2022
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality assembly reveals genomic characteristics, phylogenetic status, and causal genes for leucism plumage of Indian peafowl
    1
    1. scibot 09 Apr 2022
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giac018

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    ncbi.nlm.nih.gov/pmc/articles/PMC8985102/
  50. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome of the globe skimmer dragonfly (Pantala flavescens)
    1
    1. scibot 07 Apr 2022
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giac009

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    ncbi.nlm.nih.gov/pmc/articles/PMC8978299/
  51. academic.oup.com academic.oup.com
    A high-quality assembled genome and its comparative analysis decode the adaptive molecular mechanism of the number one Chinese cotton variety CRI-12
    1
    1. scibot 05 Apr 2022
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giac019

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac019/6562534
  52. Mar 2022
  53. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Aerobic Methoxydotrophy: Growth on Methoxylated Aromatic Compounds by Methylobacteriaceae
    1
    1. scibot 31 Mar 2022
      RRID:SCR_006086

      DOI: 10.3389/fmicb.2022.849573

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    ncbi.nlm.nih.gov/pmc/articles/PMC8963497/
  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes
    1
    1. scibot 18 Mar 2022
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giac021

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    ncbi.nlm.nih.gov/pmc/articles/PMC8917513/
  55. Jan 2022
  56. onlinelibrary.wiley.com onlinelibrary.wiley.com
    A high-quality chromosome-level genome of the endangered roughskin sculpin provides insights into its evolution and adaptation
    1
    1. scibot 22 Jan 2022
      RRID:SCR_006086

      DOI: 10.1111/1755-0998.13582

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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13582
  57. academic.oup.com academic.oup.com
    Large-scale phylogenomic analysis resolves a backbone phylogeny in ferns
    1
    1. scibot 22 Jan 2022
      RRID:SCR_006086

      DOI: 10.1093/gigascience/gix116

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    academic.oup.com/gigascience/article/7/2/gix116/4656250
  58. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of the shuttles hoppfish, Periophthalmus modestus
    1
    1. scibot 15 Jan 2022
      RRID:SCR_006086

      DOI: 10.1093/gigascience/giab089

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giab089/6505119
  59. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Highly diverged lineages of Saccharomyces paradoxus in temperate to subtropical climate zones in China
    1
    1. scibot 12 Jan 2022
      RRID:SCR_006086

      DOI: 10.1002/yea.3688

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    onlinelibrary.wiley.com/doi/10.1002/yea.3688
  60. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pan-genome analysis identifies intersecting roles for Pseudomonas specialized metabolites in potato pathogen inhibition
    1
    1. scibot 07 Jan 2022
      RRID:SCR_006086

      DOI: 10.7554/eLife.71900

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  61. Dec 2021
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  63. Nov 2021
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    De novo screening of disease-resistant genes from the chromosome-level genome of rare minnow using CRISPR-cas9 random mutation
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  65. Oct 2021
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    Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes
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  67. journals.physiology.org journals.physiology.org
    Adrenergically induced translocation of red blood cell β-adrenergic sodium-proton exchangers has ecological relevance for hypoxic and hypercapnic white seabass
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  68. Aug 2021
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    A Developmental Switch Generating Phenotypic Plasticity Is Part of a Conserved Multi-gene Locus
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  75. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome‐level assembly of Southern catfish (Silurus meridionalis) provides insights into visual adaptation to the nocturnal and benthic lifestyles
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    Chromosome-level genome assembly reveals the unique genome evolution of the swimming crab ( Portunus trituberculatus )
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  82. Jul 2021
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    Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
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    Novel Predators Reshape Holozoan Phylogeny and Reveal the Presence of a Two-Component Signaling System in the Ancestor of Animals
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    Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy
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  96. Jun 2021
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    Myoglobin primary structure reveals multiple convergent transitions to semi-aquatic life in the world's smallest mammalian divers
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  98. May 2021
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  101. Apr 2021
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  105. Dec 2020
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  107. Nov 2020
  108. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
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  110. Oct 2020
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  113. Sep 2020
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    Indirect sexual selection drives rapid sperm protein evolution in abalone
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    Genomic analyses reveal distinct genetic architectures and selective pressures in buffaloes
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    Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats
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    Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family
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    Chromosome-level de novo assembly of the pig-tailed macaque genome using linked-read sequencing and HiC proximity scaffolding
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    Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts
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    Chromosome-level genome assembly of Aldrichina grahami , a forensically important blowfly
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    Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
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    Chromosomal‐level assembly of Takifugu obscurus (Abe, 1949) genome using third‐generation DNA sequencing and Hi‐C analysis
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    Chromosome‐level genome assembly of a cyprinid fish Onychostoma macrolepis by integration of Nanopore Sequencing, Bionano and Hi‐C technology
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    Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis
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    FAMIN Is a Multifunctional Purine Enzyme Enabling the Purine Nucleotide Cycle
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  130. Aug 2020
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    Chromosome-level reference genome of the jellyfish Rhopilema esculentum
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  132. Jan 2020
  133. academic.oup.com academic.oup.com
    High-coverage genomes to elucidate the evolution of penguins
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    Chromosome-level assembly of the mustache toad genome using third-generation DNA sequencing and Hi-C analysis
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      DOI: 10.1093/gigascience/giz114

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    Trochodendron aralioides, the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research
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      DOI: 10.1093/gigascience/giz136

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  136. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Whole-genome sequencing and analysis of the Chinese herbal plant Gelsemium elegans
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      DOI: 10.1016/j.apsb.2019.08.004

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  137. academic.oup.com academic.oup.com
    High-quality Schistosoma haematobium genome achieved by single-molecule and long-range sequencing
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      DOI: 10.1093/gigascience/giz108

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    Chromosomal-level reference genome of Chinese peacock butterfly ( Papilio bianor ) based on third-generation DNA sequencing and Hi-C analysis
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      DOI: 10.1093/gigascience/giz128

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    Combining genomics and epidemiology to analyse bi-directional transmission of Mycobacterium bovis in a multi-host system
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  140. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)
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      DOI: 10.1093/gigascience/giz059

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  146. Nov 2018
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    Completeness of HIV-1 Envelope Glycan Shield at Transmission Determines Neutralization Breadth
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    A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities
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  151. academic.oup.com academic.oup.com
    Improved de novo genome assembly and analysis of the Chinese cucurbit Siraitia grosvenorii, also known as monk fruit or luo-han-guo
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    De novo genome assembly of the red silk cotton tree (Bombax ceiba)
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    Whole-Genome De Novo sequencing reveals unique genes that contributed to the adaptive evolution of the mikado pheasant
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  157. europepmc.org europepmc.org
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  158. elifesciences.org elifesciences.org
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  159. europepmc.org europepmc.org
    Draft genome of the reindeer (Rangifer tarandus).
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  160. academic.oup.com academic.oup.com
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  161. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  162. europepmc.org europepmc.org
    Inverted formin 2 regulates intracellular trafficking, placentation, and pregnancy outcome.
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  163. academic.oup.com academic.oup.com
    Panax ginseng genome examination for ginsenoside biosynthesis
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  164. europepmc.org europepmc.org
    Co-expression of xenopsin and rhabdomeric opsin in photoreceptors bearing microvilli and cilia.
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      Curator: @evieth

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  165. europepmc.org europepmc.org
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  166. Nov 2017
  167. academic.oup.com academic.oup.com
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    academic.oup.com/gigascience/article/6/9/1/4077042/The-draft-genome-sequence-of-a-desert-tree-Populus
  168. elifesciences.org elifesciences.org
    Genetic epidemiology of dengue viruses in phase III trials of the CYD tetravalent dengue vaccine and implications for efficacy
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  169. academic.oup.com academic.oup.com
    An expanded mammal mitogenome dataset from Southeast Asia
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  170. www.sciencedirect.com www.sciencedirect.com
    A Phylogenomic Solution to the Origin of Insects by Resolving Crustacean-Hexapod Relationships
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      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S0960982217305766
  171. elifesciences.org elifesciences.org
    Collagen IV and basement membrane at the evolutionary dawn of metazoan tissues
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      Curator: @gabimpine

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    elifesciences.org/content/6/e24176
  172. www.sciencedirect.com www.sciencedirect.com
    Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013–2016 Epidemic
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  173. elifesciences.org elifesciences.org
    Co-option of an endogenous retrovirus envelope for host defense in hominid ancestors
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  174. www.sciencedirect.com www.sciencedirect.com
    Planarian Epidermal Stem Cells Respond to Positional Cues to Promote Cell-Type Diversity
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  175. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Extensive cargo identification reveals distinct biological roles of the 12 importin pathways
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  176. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A molecular portrait of maternal sepsis from Byzantine Troy
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  177. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Oral transfer of chemical cues, growth proteins and hormones in social insects
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      Curator: @chewbeccax

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  178. www.sciencedirect.com www.sciencedirect.com
    Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts
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    1. scibot 08 Nov 2017
      SCR_006086

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S0092867416310716