290 Matching Annotations
  1. Last 7 days
  2. www.sciencedirect.com www.sciencedirect.com
    Deep profiling deconstructs features associated with memory CD8+ T cell tissue residence
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    1. scibot 21 Dec 2024
      RRID:SCR_006442

      DOI: 10.1016/j.immuni.2024.11.007

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    sciencedirect.com/science/article/pii/S1074761324005223
  3. www.sciencedirect.com www.sciencedirect.com
    Hormone-responsive progenitors have a unique identity and exhibit high motility during mammary morphogenesis
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    1. scibot 19 Dec 2024
      RRID:SCR_006442

      DOI: 10.1016/j.celrep.2024.115073

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    sciencedirect.com/science/article/pii/S2211124724014244
  4. Dec 2024
  5. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    H4K20me3-Mediated Repression of Inflammatory Genes is a Characteristic and Targetable Vulnerability of Persister Cancer Cells
    1
    1. scibot 13 Dec 2024
      RRID:SCR_006442

      DOI: 10.1158/0008-5472.CAN-24-0529

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    pmc.ncbi.nlm.nih.gov/articles/PMC7617193/
  6. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    IFRD1 is required for maintenance of bladder epithelial homeostasis
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    1. scibot 13 Dec 2024
      RRID:SCR_006442

      DOI: 10.1016/j.isci.2024.111282

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    pmc.ncbi.nlm.nih.gov/articles/PMC11613175/
  7. www.nature.com www.nature.com
    Using parenclitic networks on phaeochromocytoma and paraganglioma tumours provides novel insights on global DNA methylation
    1
    1. scibot 05 Dec 2024
      RRID:SCR_006442

      DOI: 10.1038/s41598-024-81486-9

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    nature.com/articles/s41598-024-81486-9
  8. Nov 2024
  9. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Drug prioritization identifies panobinostat as a tailored treatment element for patients with metastatic hepatoblastoma
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    1. scibot 14 Nov 2024
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      DOI: 10.1186/s13046-024-03221-6

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    pmc.ncbi.nlm.nih.gov/articles/PMC11556140/
  10. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    High TNF and NF-κB Pathway Dependency Are Associated with AZD5582 Sensitivity in OSCC via CASP8-Dependent Apoptosis
    1
    1. scibot 13 Nov 2024
      RRID: SCR_006442

      DOI: 10.1158/2767-9764.CRC-24-0136

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    pmc.ncbi.nlm.nih.gov/articles/PMC11551840/
  11. www.mdpi.com www.mdpi.com
    NF-ΚB Activation as a Key Driver in Chronic Lymphocytic Leukemia Evolution to Richter’s Syndrome: Unraveling the Influence of Immune Microenvironment Dynamics
    1
    1. scibot 08 Nov 2024
      RRID:SCR_006442

      DOI: 10.3390/genes15111434

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    mdpi.com/2073-4425/15/11/1434
  12. 52.53.155.43 52.53.155.43
    can-24-0529-html.html
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    1. scibot 07 Nov 2024
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      DOI: 10.1158/0008-5472.can-24-0529

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    52.53.155.43/4faeafb6ce934469a644c8bc705adf42bb41b860/can-24-0529-html.html
  13. Oct 2024
  14. www.sciencedirect.com www.sciencedirect.com
    Sex-biased human thymic architecture guides T cell development through spatially defined niches
    1
    1. scibot 09 Oct 2024
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      DOI: 10.1016/j.devcel.2024.09.011

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    sciencedirect.com/science/article/pii/S1534580724005392
  15. aacrjournals.org aacrjournals.org
    Monocytic Differentiation and AHR Signaling as Primary Nodes of BET Inhibitor Response in Acute Myeloid Leukemia
    1
    1. scibot 02 Oct 2024
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      DOI: 10.1158/2643-3230.BCD-21-0012

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    aacrjournals.org/bloodcancerdiscov/article/2/5/518/665838/Monocytic-Differentiation-and-AHR-Signaling-as
  16. aacrjournals.org aacrjournals.org
    YAP-Mediated Repression of HRK Regulates Tumor Growth, Therapy Response, and Survival Under Tumor Environmental Stress in Neuroblastoma
    1
    1. scibot 02 Oct 2024
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      DOI: 10.1158/0008-5472.CAN-20-0025

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    aacrjournals.org/cancerres/article/80/21/4741/645935/YAP-Mediated-Repression-of-HRK-Regulates-Tumor
  17. www.thelancet.com www.thelancet.com
    Profiling steroid hormone landscape of bladder cancer reveals depletion of intratumoural androgens to castration levels: a cross-sectional study
    2
    1. scibot 02 Oct 2024
      RRID:SCR_006442

      DOI: 10.1016/j.ebiom.2024.105359

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    2. scibot 02 Oct 2024
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      DOI: 10.1016/j.ebiom.2024.105359

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    thelancet.com/journals/ebiom/article/PIIS2352-3964(24)00395-5/abstract
  18. www.sciencedirect.com www.sciencedirect.com
    A clinically effective model based on cell-free DNA methylation and low-dose CT for risk stratification of pulmonary nodules
    1
    1. scibot 02 Oct 2024
      RRID:SCR_006442

      DOI: 10.1016/j.xcrm.2024.101750

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    sciencedirect.com/science/article/pii/S2666379124004804
  19. Sep 2024
  20. www.sciencedirect.com www.sciencedirect.com
    Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques
    1
    1. scibot 25 Sep 2024
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      DOI: 10.1016/j.molcel.2019.01.006

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    sciencedirect.com/science/article/pii/S1097276519300061
  21. Aug 2024
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Potentiating Salvage Radiotherapy in Radiorecurrent Prostate Cancer Through Anti-CTLA4 Therapy: Implications from a Syngeneic Model
    1
    1. scibot 30 Aug 2024
      RRID:SCR_006442

      DOI: 10.3390/cancers16162839

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    ncbi.nlm.nih.gov/pmc/articles/PMC11352774/
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    p53R172H and p53R245W Hotspot Mutations Drive Distinct Transcriptomes in Mouse Mammary Tumors Through a Convergent Transcriptional Mediator
    1
    1. scibot 21 Aug 2024
      RRID:SCR_006442

      DOI: 10.1158/2767-9764.CRC-24-0128

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    ncbi.nlm.nih.gov/pmc/articles/PMC11310746/
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The BET PROTAC inhibitor GNE-987 displays anti-tumor effects by targeting super-enhancers regulated gene in osteosarcoma
    1
    1. scibot 18 Aug 2024
      RRID:SCR_006442

      DOI: 10.1186/s12885-024-12691-y

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    ncbi.nlm.nih.gov/pmc/articles/PMC11292958/
  25. www.tandfonline.com www.tandfonline.com
    Drought-induced molecular changes in crown of various barley phytohormone mutants
    1
    1. scibot 18 Aug 2024
      RRID:SCR_006442

      DOI: 10.1080/15592324.2024.2371693

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    tandfonline.com/doi/abs/10.1080/15592324.2024.2371693
  26. www.frontiersin.org www.frontiersin.org
    Manganese Depletion Leads to Multisystem Changes in the Transcriptome of the Opportunistic Pathogen Streptococcus sanguinis
    1
    1. scibot 02 Aug 2024
      RRID:SCR_006442

      DOI: 10.3389/fmicb.2020.592615

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    frontiersin.org/article/10.3389/fmicb.2020.592615/full
  27. Jul 2024
  28. www.biorxiv.org www.biorxiv.org
    Advancing the Indian Cattle Pangenome: Characterizing Non-Reference Sequences in Bos indicus
    1
    1. scibot 26 Jul 2024
      RRID:SCR_006442

      DOI: 10.1101/2024.07.18.604025

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    biorxiv.org/content/10.1101/2024.07.18.604025v1
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Tumor-Immune Signatures of Treatment Resistance to Brentuximab Vedotin with Ipilimumab and/or Nivolumab in Hodgkin Lymphoma
    1
    1. scibot 18 Jul 2024
      RRID:SCR_006442

      DOI: 10.1158/2767-9764.CRC-24-0252

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    ncbi.nlm.nih.gov/pmc/articles/PMC11247952/
  30. www.cell.com www.cell.com
    Proteobacteria impair anti-tumor immunity in the omentum by consuming arginine
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    1. scibot 18 Jul 2024
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      DOI: 10.1016/j.chom.2024.06.003

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    cell.com/cell-host-microbe/abstract/S1931-3128(24)00197-5
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    RNF185 control of COL3A1 expression limits prostate cancer migration and metastatic potential
    1
    1. scibot 07 Jul 2024
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      DOI: 10.1158/1541-7786.MCR-23-0512

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    ncbi.nlm.nih.gov/pmc/articles/PMC10841372/
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Effect of Exposure to Neighborhood Violence on Glucocorticoid Receptor Signaling in Lung Tumors
    1
    1. scibot 07 Jul 2024
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      DOI: 10.1158/2767-9764.CRC-24-0032

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    ncbi.nlm.nih.gov/pmc/articles/PMC11221527/
  33. www.mdpi.com www.mdpi.com
    Immunological Signatures for Early Detection of Human Head and Neck Squamous Cell Carcinoma through RNA Transcriptome Analysis of Blood Platelets
    2
    1. scibot 03 Jul 2024
      RRID:SCR_006442

      DOI: 10.3390/cancers16132399

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    2. scibot 03 Jul 2024
      RRID:SCR_006442

      DOI: 10.3390/cancers16132399

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    mdpi.com/2072-6694/16/13/2399
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Drought-induced molecular changes in crown of various barley phytohormone mutants
    1
    1. scibot 02 Jul 2024
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      DOI: 10.1080/15592324.2024.2371693

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    ncbi.nlm.nih.gov/pmc/articles/PMC11210921/
  35. Jun 2024
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Surgical tumour resection deregulates Hallmarks of Cancer in resected tissue and the surrounding microenvironment
    1
    1. scibot 08 Jun 2024
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      DOI: 10.1158/1541-7786.MCR-23-0265

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    ncbi.nlm.nih.gov/pmc/articles/PMC11148542/
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Tumor-infiltrating normal B cells revealed by immunoglobulin repertoire clonotype analysis are highly prognostic and crucial for antitumor immune responses in DLBCL
    1
    1. scibot 07 Jun 2024
      RRID:SCR_006442

      DOI: 10.1158/1078-0432.CCR-23-1554

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    ncbi.nlm.nih.gov/pmc/articles/PMC10842978/
  38. aacrjournals.org aacrjournals.org
    Obesogenic High-Fat Diet and MYC Cooperate to Promote Lactate Accumulation and Tumor Microenvironment Remodeling in Prostate Cancer
    1
    1. scibot 07 Jun 2024
      RRID:SCR_006442

      DOI: 10.1158/0008-5472.CAN-23-0519

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    aacrjournals.org/cancerres/article/84/11/1834/745520/Obesogenic-High-Fat-Diet-and-MYC-Cooperate-to
  39. May 2024
  40. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Modelling atopic dermatitis in healthy human skin for the characterization of topical compounds
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    1. scibot 31 May 2024
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      DOI: 10.1111/exd.15099

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    onlinelibrary.wiley.com/doi/10.1111/exd.15099
  41. 52.53.155.43 52.53.155.43
    Prenatal tuning of thalamic spontaneous activity patterns regulates somatosensory map resolution
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    1. scibot 29 May 2024
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      DOI: 10.1101/2024.03.15.585193

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    2. scibot 29 May 2024
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      DOI: 10.1101/2024.03.15.585193

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    52.53.155.43/a7dcd09b97130d36ebf5e681970d32cc5f19936b/2024.03.15.585193v1.full-html.html
  42. 52.53.155.43 52.53.155.43
    mcr-23-0265-html.html
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      DOI: 10.1158/1541-7786.mcr-23-0265

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    52.53.155.43/dbddac3ff5d5bd84b4f8fbbd2f531adbd772c5a7/mcr-23-0265-html.html
  43. www.sciencedirect.com www.sciencedirect.com
    The CD8+ T cell tolerance checkpoint triggers a distinct differentiation state defined by protein translation defects
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    1. scibot 23 May 2024
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      DOI: 10.1016/j.immuni.2024.04.026

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    sciencedirect.com/science/article/pii/S1074761324002310
  44. aacrjournals.org aacrjournals.org
    Integrative molecular analyses of the MD Anderson prostate cancer patient-derived xenograft (MDA PCa PDX) series
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    1. scibot 17 May 2024
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      DOI: 10.1158/1078-0432.CCR-23-2438

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    aacrjournals.org/clincancerres/article/30/10/2272/745168/Integrative-Molecular-Analyses-of-the-MD-Anderson
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Tumor niche network-defined subtypes predict immunotherapy response of esophageal squamous cell cancer
    1
    1. scibot 15 May 2024
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      DOI: 10.1016/j.isci.2024.109795

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    ncbi.nlm.nih.gov/pmc/articles/PMC11089351/
  46. Apr 2024
  47. www.sciencedirect.com www.sciencedirect.com
    Mis-expression of GATA6 re-programs cell fate during early hematopoiesis
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    1. scibot 30 Apr 2024
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      DOI: 10.1016/j.celrep.2024.114159

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  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ERBB3 overexpression is enriched in diverse patient populations with castration-sensitive prostate cancer and is associated with a unique AR activity signature
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  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PALB2-mutated human mammary cells display a broad spectrum of morphological and functional abnormalities induced by increased TGFβ signaling
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  50. 52.53.155.43 52.53.155.43
    Craniofacial Chondrogenesis in Organoids from Human Stem Cell-Derived Neural Crest Cells
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  51. www.sciencedirect.com www.sciencedirect.com
    3D reconstruction of the mouse cochlea from scRNA-seq data suggests morphogen-based principles in apex-to-base specification
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  52. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Select EZH2 inhibitors enhance viral mimicry effects of DNMT inhibition through a mechanism involving NFAT:AP-1 signaling
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  53. Mar 2024
  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Epigenetic MLH1 silencing concurs with mismatch repair deficiency in sporadic, naturally occurring colorectal cancer in rhesus macaques
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    Impaired oxysterol-liver X receptor signaling underlies aberrant cortical neurogenesis in a stem cell model of neurodevelopmental disorder
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    A multiparameter molecular classifier to predict response to neoadjuvant lapatinib plus trastuzumab without chemotherapy in HER2+ breast cancer
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  57. Feb 2024
  58. aacrjournals.org aacrjournals.org
    A Systems Biology Approach to Understand the Racial Disparities in Colorectal Cancer
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  59. 52.53.155.43 52.53.155.43
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  60. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Therapy-Induced Senescence Contributes to the Efficacy of Abemaciclib in Patients with Dedifferentiated Liposarcoma
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  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mapping the developmental potential of mouse inner ear organoids at single-cell resolution
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    Single-cell spatial transcriptomic and translatomic profiling of dopaminergic neurons in health, aging, and disease
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    Systemic inflammatory response syndrome triggered by blood-borne pathogens induces prolonged dendritic cell paralysis and immunosuppression
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  64. Jan 2024
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    BRCA1 and ELK-1 regulate neural progenitor cell fate in the optic tectum in response to visual experience in Xenopus laevis tadpoles
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    A Systems Biology Approach to Understand the Racial Disparities in Colorectal Cancer
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    Leveraging tissue-specific enhancer-target gene regulatory networks identifies enhancer somatic mutations that functionally impact lung cancer
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  68. Dec 2023
  69. www.mdpi.com www.mdpi.com
    High Expression of THY1 in Intestinal Gastric Cancer as a Key Factor in Tumor Biology: A Poor Prognosis-Independent Marker Related to the Epithelial–Mesenchymal Transition Profile
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  70. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Blimp-1 and c-Maf regulate  Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
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  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Reversal of lactate and PD-1-mediated macrophage immunosuppression controls growth of PTEN/p53-deficient prostate cancer
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  72. 52.53.155.43 52.53.155.43
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  73. Nov 2023
  74. www.sciencedirect.com www.sciencedirect.com
    Hypoxia-sensitive cells trigger NK cell activation via the KLF4-ASH1L-ICAM-1 axis, contributing to impairment in the rat epididymis
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    Integrated Network Analysis of microRNAs, mRNAs, and Proteins Reveals the Regulatory Interaction between hsa-mir-200b and CFL2 Associated with Advanced Stage and Poor Prognosis in Patients with Intestinal Gastric Cancer
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    Molecular portraits of colorectal cancer morphological regions
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      DOI: 10.7554/eLife.86655

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    Population-specific Mutation Patterns in Breast Tumors from African American, European American, and Kenyan Patients
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  78. wellcomeopenresearch.org wellcomeopenresearch.org
    Blimp-1 and c-Maf regulate Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
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      DOI: 10.12688/wellcomeopenres.19680.1

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    Integrative genomic analyses identify lncRNA regulatory networks across pediatric leukemias and solid tumors
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  80. Oct 2023
  81. www.sciencedirect.com www.sciencedirect.com
    Three-dimensional genome architecture coordinates key regulators of lineage specification in mammary epithelial cells
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    Mechanopathology of biofilm-like Mycobacterium tuberculosis cords
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    Epigenetic and transcriptional regulation of CCL17 production by glucocorticoids in arthritis
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  84. 52.53.155.43 52.53.155.43
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  85. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An Early Neoplasia Index (ENI10), Based on Molecular Identity of CD10 Cells and Associated Stemness Biomarkers, is a Predictor of Patient Outcome in Many Cancers
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  86. Sep 2023
  87. 52.53.155.43 52.53.155.43
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    Single-cell profiling of murine bladder cancer identifies sex-specific transcriptional signatures with prognostic relevance
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  89. Aug 2023
  90. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of ANCO1 Expression Regulates Chromatin Accessibility and Drives Progression of Early-Stage Triple-Negative Breast Cancer
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  91. Jul 2023
  92. www.sciencedirect.com www.sciencedirect.com
    Gene-network analysis predicts clinical response to immunotherapy in patients affected by NSCLC
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  94. 52.53.155.43 52.53.155.43
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  95. Jun 2023
  96. 52.53.155.43 52.53.155.43
    can-22-3173-html.html
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      DOI: 10.1158/0008-5472.CAN-22-3173

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  97. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Circulating hsa-miR-5096 predicts 18F-FDG PET/CT positivity and modulates somatostatin receptor 2 expression: a novel miR-based assay for pancreatic neuroendocrine tumors
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      SCR_006442

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  98. May 2023
  99. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evolution of Resistance to Irinotecan in Cancer Cells Involves Generation of Topoisomerase-Guided Mutations in Non-Coding Genome That Reduce the Chances of DNA Breaks
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  100. www.sciencedirect.com www.sciencedirect.com
    Tumor biology and immune infiltration define primary liver cancer subsets linked to overall survival after immunotherapy
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  101. www.nature.com www.nature.com
    Targeting metabolism by B-raf inhibitors and diclofenac restrains the viability of BRAF-mutated thyroid carcinomas with Hif-1α-mediated glycolytic phenotype
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  102. www.mdpi.com www.mdpi.com
    Pre-Diagnostic Saliva Microbiota of School-Aged Children Who Developed Type 1 Diabetes or Inflammatory Bowel Diseases
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  103. www.biorxiv.org www.biorxiv.org
    Bcl-xL is translocated to the nucleus via CtBP2 to epigenetically promote metastasis
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  104. www.nature.com www.nature.com
    Local genetic correlations exist among neurodegenerative and neuropsychiatric diseases
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  105. Apr 2023
  106. www.biorxiv.org www.biorxiv.org
    Single cell spatial transcriptomic and translatomic profiling of dopaminergic neurons in health, ageing and disease
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    biorxiv.org/content/10.1101/2023.04.20.537553v1
  107. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Bayesian Machine Learning Enables Identification of Transcriptional Network Disruptions Associated with Drug-Resistant Prostate Cancer
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  108. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    DNA methylation landscapes of prostate cancer brain metastasis are shaped by early driver genetic alterations
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    ncbi.nlm.nih.gov/pmc/articles/PMC10102845/
  109. europepmc.org europepmc.org
    A Novel Method for Visualizing In-Vivo Rates of Protein Degradation Provides Insight into how TRIM28 Regulates Muscle Size
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  110. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The phosphoproteome of choroid plexus epithelial cells following infection with Neisseria meningitidis
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    ncbi.nlm.nih.gov/pmc/articles/PMC10102474/
  111. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Induction of PARP7 Creates a Vulnerability for Growth Inhibition by RBN2397 in Prostate Cancer Cells
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      DOI: 10.1158/2767-9764.CRC-23-0086

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    ncbi.nlm.nih.gov/pmc/articles/PMC10108886/
  112. www.sciencedirect.com www.sciencedirect.com
    Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia
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      DOI: 10.1016/j.celrep.2023.112373

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    sciencedirect.com/science/article/pii/S2211124723003844
  113. Mar 2023
  114. www.sciencedirect.com www.sciencedirect.com
    SUCNR1 signaling in adipocytes controls energy metabolism by modulating circadian clock and leptin expression
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      DOI: 10.1016/j.cmet.2023.03.004

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    sciencedirect.com/science/article/pii/S1550413123000827
  115. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Tumor-associated macrophages respond to chemotherapy by detrimental transcriptional reprogramming and suppressing stabilin-1 mediated clearance of EGF
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      DOI: 10.3389/fimmu.2023.1000497

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    ncbi.nlm.nih.gov/pmc/articles/PMC10028613/
  116. europepmc.org europepmc.org
    mRNAs encoding IL-12 and a decoy-resistant variant of IL-18 synergize to engineer T cells for efficacious intratumoral adoptive immunotherapy
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      DOI: 10.1016/j.xcrm.2023.100978

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  117. link.springer.com link.springer.com
    Expression of down-regulated ERV LTR elements associates with immune activation in human small-cell lung cancers
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      DOI: 10.1186/s13100-023-00290-w

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  118. www.nature.com www.nature.com
    A noncanonical response to replication stress protects genome stability through ROS production, in an adaptive manner
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      DOI: 10.1038/s41418-023-01141-0

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  119. Feb 2023
  120. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome-wide epigenetic and mRNA-expression profiling followed by CRISPR/Cas9-mediated gene-disruptions corroborate the MIR141/MIR200C-ZEB1/ZEB2-FGFR1 axis in acquired EMT-associated EGFR TKI-resistance in NSCLC cells
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    ncbi.nlm.nih.gov/pmc/articles/PMC9903082/
  121. www.biorxiv.org www.biorxiv.org
    Molecular portraits of colorectal cancer morphological regions
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      DOI: 10.1101/2023.01.24.525310

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    biorxiv.org/content/10.1101/2023.01.24.525310v3
  122. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptome profiling disclosed the effect of single and combined drought and heat stress on reprogramming of genes expression in barley flag leaf
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      DOI: 10.3389/fpls.2022.1096685

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    ncbi.nlm.nih.gov/pmc/articles/PMC9885109/
  123. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    DDR2 coordinates EMT and metabolic reprogramming as a shared effector of FOXQ1 and SNAI1
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      DOI: 10.1158/2767-9764.crc-22-0013

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  124. Jan 2023
  125. www.sciencedirect.com www.sciencedirect.com
    IGF1 deficiency integrates stunted growth and neurodegeneration in Down syndrome
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    sciencedirect.com/science/article/pii/S221112472201779X
  126. www.sciencedirect.com www.sciencedirect.com
    MERR APEX-seq protocol for profiling the subcellular nascent transcriptome in mammalian cells
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      DOI: 10.1016/j.xpro.2023.102057

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  127. www.sciencedirect.com www.sciencedirect.com
    Stem cell plasticity, acetylation of H3K14, and de novo gene activation rely on KAT7
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      DOI: 10.1016/j.celrep.2022.111980

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  128. 52.53.155.43 52.53.155.43
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      DOI: 10.1016/j.cell.2018.05.061

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  129. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated Molecular Characterization of Patient-Derived Models Reveals Therapeutic Strategies for Treating CIC-DUX4 Sarcoma
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      DOI: 10.1158/0008-5472.CAN-21-1222

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  130. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Neoadjuvant Intravenous Oncolytic Vaccinia Virus Therapy Promotes Anticancer Immunity in Patients
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      DOI: 10.1158/2326-6066.CIR-21-0171

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  131. www.sciencedirect.com www.sciencedirect.com
    Neuronal and astrocytic contributions to Huntington’s disease dissected with zinc finger protein transcriptional repressors
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      DOI: 10.1016/j.celrep.2022.111953

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  132. Dec 2022
  133. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of GM-CSF-dependent instruction of alveolar macrophages in COVID-19 provides a rationale for inhaled GM-CSF treatment
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      DOI: 10.1016/j.xcrm.2022.100833

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  134. Nov 2022
  135. www.sciencedirect.com www.sciencedirect.com
    CD8+ T cell metabolic rewiring defined by scRNA-seq identifies a critical role of ASNS expression dynamics in T cell differentiation
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  136. aacrjournals.org aacrjournals.org
    DDR2 Coordinates EMT and Metabolic Reprogramming as a Shared Effector of FOXQ1 and SNAI1
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    aacrjournals.org/cancerrescommun/article/2/11/1388/710518/DDR2-Coordinates-EMT-and-Metabolic-Reprogramming
  137. Oct 2022
  138. www.cell.com www.cell.com
    Motor neurons use push-pull signals to direct vascular remodeling critical for their connectivity
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      DOI: 10.1016/j.neuron.2022.09.021

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    cell.com/neuron/fulltext/S0896-6273(22)00860-1
  139. Aug 2022
  140. link.springer.com link.springer.com
    Identification of stromal microenvironment characteristics and key molecular mining in pancreatic cancer
    1
    1. scibot 26 Aug 2022
      RRID:SCR_006442

      DOI: 10.1007/s12672-022-00532-y

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  141. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Losartan blocks osteosarcoma-elicited monocyte recruitment, and combined with the kinase inhibitor toceranib, exerts significant clinical benefit in canine metastatic osteosarcoma
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    1. scibot 22 Aug 2022
      RRID:SCR_006442

      DOI: 10.1158/1078-0432.CCR-21-2105

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    ncbi.nlm.nih.gov/pmc/articles/PMC8866227/
  142. 52.53.155.43 52.53.155.43
    Local genetic correlations exist among neurodegenerative and neuropsychiatric diseases
    1
    1. scibot 22 Aug 2022
      RRID:SCR_006442

      DOI: 10.1101/2022.05.30.22275781

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    52.53.155.43/362fce05ea7f85123208e7831722388400cae744/2022.05.30.22275781.full-html.html
  143. Jul 2022
  144. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    BPS Publications
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      RRID:SCR_006442

      DOI: 10.1111/bph.15910

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    bpspubs.onlinelibrary.wiley.com/doi/10.1111/bph.15910
  145. www.sciencedirect.com www.sciencedirect.com
    Spatiotemporal genomic analysis reveals distinct molecular features in recurrent stage I non-small cell lung cancers
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      DOI: 10.1016/j.celrep.2022.111047

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    sciencedirect.com/science/article/pii/S2211124722008415
  146. www.sciencedirect.com www.sciencedirect.com
    Extracellular vesicles from thyroid cancer harbor a functional machinery involved in extracellular matrix remodeling
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      DOI: 10.1016/j.ejcb.2022.151254

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    sciencedirect.com/science/article/pii/S0171933522000577
  147. Jun 2022
  148. 52.53.155.43 52.53.155.43
    KCa3.1 differentially regulates trachea and bronchi epithelial gene expression in a chronic-asthma mouse model
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      DOI: 10.1152/physiolgenomics.00134.2021

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    52.53.155.43/bdb24171b1be34ca6d57a161f01e6067da1b2327/physiolgenomics.00134.2021-html.html
  149. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Mutational Signature Comprehensive Analysis Toolkit (musicatk) for the discovery, prediction, and exploration of mutational signatures
    2
    1. scibot 07 Jun 2022
      RRID:SCR_006442

      DOI: 10.1158/0008-5472.CAN-21-0899

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    ncbi.nlm.nih.gov/pmc/articles/PMC8639789/
  150. www.sciencedirect.com www.sciencedirect.com
    Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion
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      DOI: 10.1016/j.cub.2022.05.019

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    sciencedirect.com/science/article/pii/S0960982222007783
  151. May 2022
  152. www.sciencedirect.com www.sciencedirect.com
    Gene-Networks analyses define a subgroup of Small Cell Lung Cancers with short survival
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    1. scibot 25 May 2022
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      DOI: 10.1016/j.cllc.2022.05.012

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    sciencedirect.com/science/article/pii/S1525730422001085
  153. aacrjournals.org aacrjournals.org
    Differential gain-of-function activity of three p53 hotspot mutants in vivo
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      DOI: 10.1158/0008-5472.CAN-21-3376

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    aacrjournals.org/cancerres/article/82/10/1926/696328/Differential-Gain-of-Function-Activity-of-Three
  154. aacrjournals.org aacrjournals.org
    Tumor ENPP1(CD203a)/Haptoglobin Axis Exploits Myeloid-Derived Suppressor Cells to Promote Post-Radiotherapy Local Recurrence in Breast Cancer
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      RRID:SCR_006442

      DOI: 10.1158/2159-8290.CD-21-0932

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    aacrjournals.org/cancerdiscovery/article/12/5/1356/694562/Tumor-ENPP1-CD203a-Haptoglobin-Axis-Exploits
  155. www.sciencedirect.com www.sciencedirect.com
    Cytoplasmic proteotoxicity regulates HRI-dependent phosphorylation of eIF2α via the Hsp70-Bag3 module
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    1. scibot 10 May 2022
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      DOI: 10.1016/j.isci.2022.104282

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  156. Apr 2022
  157. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    BPS Publications
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      DOI: 10.1111/bph.15838

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    bpspubs.onlinelibrary.wiley.com/doi/10.1111/bph.15838
  158. www.sciencedirect.com www.sciencedirect.com
    An optimized 4C-seq protocol based on cistrome and epigenome data in the mouse RAW264.7 macrophage cell line
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      RRID:SCR_006442

      DOI: 10.1016/j.xpro.2022.101338

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    sciencedirect.com/science/article/pii/S2666166722002180
  159. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Novel mouse models of bladder cancer identify a prognostic signature associated with risk of disease progression
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      DOI: 10.1158/0008-5472.CAN-21-1254

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    ncbi.nlm.nih.gov/pmc/articles/PMC8609963/
  160. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Elevated MACC1 Expression in Colorectal Cancer Is Driven by Chromosomal Instability and Is Associated with Molecular Subtype and Worse Patient Survival
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    1. scibot 13 Apr 2022
      RRID:SCR_006442

      DOI: 10.3390/cancers14071749

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    ncbi.nlm.nih.gov/pmc/articles/PMC8997143/
  161. aacrjournals.org aacrjournals.org
    Targeted Therapy of TERT-Rearranged Neuroblastoma with BET Bromodomain Inhibitor and Proteasome Inhibitor Combination Therapy
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    1. scibot 07 Apr 2022
      RRID:SCR_006442

      DOI: 10.1158/1078-0432.CCR-20-3044

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    aacrjournals.org/clincancerres/article/27/5/1438/83571/Targeted-Therapy-of-TERT-Rearranged-Neuroblastoma
  162. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cancer cells retrace a stepwise differentiation program during malignant progression
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    1. scibot 02 Apr 2022
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      DOI: 10.1158/2159-8290.CD-20-1637

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    ncbi.nlm.nih.gov/pmc/articles/PMC7611766/
  163. Mar 2022
  164. elifesciences.org elifesciences.org
    Confined migration promotes cancer metastasis through resistance to anoikis and increased invasiveness
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    1. scibot 11 Mar 2022
      RRID:SCR_006442

      DOI: 10.7554/eLife.73150

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    elifesciences.org/articles/73150
  165. www.sciencedirect.com www.sciencedirect.com
    Metabolic incorporation of electron-rich ribonucleosides enhances APEX-seq for profiling spatially restricted nascent transcriptome
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    1. scibot 04 Mar 2022
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      DOI: 10.1016/j.chembiol.2022.02.005

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    sciencedirect.com/science/article/pii/S2451945622000861
  166. Feb 2022
  167. www.sciencedirect.com www.sciencedirect.com
    EBF1 nuclear repositioning instructs chromatin refolding to promote therapy resistance in T leukemic cells
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    1. scibot 23 Feb 2022
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      DOI: 10.1016/j.molcel.2022.01.015

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    sciencedirect.com/science/article/pii/S1097276522000582
  168. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An AIB1 isoform alters enhancer access and enables progression of early stage triple-negative breast cancer
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      DOI: 10.1158/0008-5472.CAN-20-3625

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    ncbi.nlm.nih.gov/pmc/articles/PMC8373795/
  169. www.sciencedirect.com www.sciencedirect.com
    Inhibition of BCL2A1 by STAT5 inactivation overcomes resistance to targeted therapies of FLT3-ITD/D835 mutant AML
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      DOI: 10.1016/j.tranon.2022.101354

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    sciencedirect.com/science/article/pii/S193652332200016X
  170. Jan 2022
  171. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    Modulation of the Human Pancreatic Ductal Adenocarcinoma Immune Microenvironment by Stereotactic Body Radiotherapy
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      DOI: 10.1158/1078-0432.CCR-21-2495

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    clincancerres.aacrjournals.org/content/28/1/150
  172. www-sciencedirect-com.libproxy.snu.ac.kr www-sciencedirect-com.libproxy.snu.ac.kr
    Primary germinal center-resident T follicular helper cells are a physiologically distinct subset of CXCR5hiPD-1hi T follicular helper cells
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      DOI: 10.1016/j.immuni.2021.12.015

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    www-sciencedirect-com.libproxy.snu.ac.kr/science/article/pii/S1074761321005513
  173. www.sciencedirect.com www.sciencedirect.com
    Quiescent human glioblastoma cancer stem cells drive tumor initiation, expansion, and recurrence following chemotherapy
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      DOI: 10.1016/j.devcel.2021.12.007

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  174. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Regulatory T cell transcriptomic reprogramming characterizes adverse events by checkpoint inhibitors in solid tumors
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      DOI: 10.1158/2326-6066.CIR-20-0969

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  175. Dec 2021
  176. www.nature.com www.nature.com
    Ezh2 is essential for the generation of functional yolk sac derived erythro-myeloid progenitors
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      DOI: 10.1038/s41467-021-27140-8

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  177. www.cell.com www.cell.com
    MYC assembles and stimulates topoisomerases 1 and 2 in a “topoisome”
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      DOI: 10.1016/j.molcel.2021.11.016

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  178. Nov 2021
  179. www.sciencedirect.com www.sciencedirect.com
    Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1
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      DOI: 10.1016/j.molcel.2021.10.015

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    Patch-seq of mouse DRG neurons reveals candidate genes for specific mechanosensory functions
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  181. Oct 2021
  182. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Myogenin controls via AKAP6 non-centrosomal microtubule-organizing center formation at the nuclear envelope
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      DOI: 10.7554/eLife.65672

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    ncbi.nlm.nih.gov/pmc/articles/PMC8523159/
  183. www.sciencedirect.com www.sciencedirect.com
    HIV reservoir quantification by five-target multiplex droplet digital PCR
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      DOI: 10.1016/j.xpro.2021.100885

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  184. www.sciencedirect.com www.sciencedirect.com
    Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier
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      DOI: 10.1016/j.celrep.2021.109755

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  185. Sep 2021
  186. www.sciencedirect.com www.sciencedirect.com
    The induction of a mesenchymal phenotype by platelet cloaking of cancer cells is a universal phenomenon
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      DOI: 10.1016/j.tranon.2021.101229

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  187. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Monocytic differentiation and AHR signaling as Primary Nodes of BET Inhibitor Response in Acute Myeloid Leukemia
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      DOI: 10.1158/2643-3230.bcd-21-0012

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    ncbi.nlm.nih.gov/pmc/articles/PMC8462123/
  188. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cardiac pathologies in mouse loss of imprinting models are due to misexpression of H19 long noncoding RNA
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      DOI: 10.7554/eLife.67250

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  189. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of Mir146b with aging contributes to inflammation and mitochondrial dysfunction in thioglycollate-elicited peritoneal macrophages
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    1. scibot 11 Sep 2021
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      DOI: 10.7554/eLife.66703

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  190. www.sciencedirect.com www.sciencedirect.com
    Regulation of protein abundance in genetically diverse mouse populations
    1
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      DOI: 10.1016/j.xgen.2021.100003

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    Discovery of synthetic lethal and tumor suppressor paralog pairs in the human genome
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      DOI: 10.1016/j.celrep.2021.109597

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  192. Aug 2021
  193. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Somatic Epigenetic Silencing of RIPK3 Inactivates Necroptosis and Contributes to Chemoresistance in Malignant Mesothelioma
    1
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      DOI: 10.1158/1078-0432.CCR-18-3683

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  194. www.nature.com www.nature.com
    Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq
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      DOI: 10.1038/s41596-021-00585-3

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  195. www.sciencedirect.com www.sciencedirect.com
    Transcription Factor PU.1 Promotes Conventional Dendritic Cell Identity and Function via Induction of Transcriptional Regulator DC-SCRIPT
    1
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      DOI: 10.1016/j.immuni.2018.11.010

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    Dichotomous Expression of TNF Superfamily Ligands on Antigen-Presenting Cells Controls Post-priming Anti-viral CD4+ T Cell Immunity
    1
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      DOI: 10.1016/j.immuni.2017.10.014

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  197. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The COVIDome Explorer researcher portal
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      DOI: 10.1016/j.celrep.2021.109527

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  198. Jul 2021
  199. link.springer.com link.springer.com
    Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance
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      DOI: 10.1007/s00401-019-02116-7

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  200. www.nature.com www.nature.com
    Combinatorial targeting of MTHFD2 and PAICS in purine synthesis as a novel therapeutic strategy
    1
    1. scibot 31 Jul 2021
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      DOI: 10.1038/s41419-019-2033-z

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  201. elifesciences.org elifesciences.org
    Human Nup98 regulates the localization and activity of DExH/D-box helicase DHX9
    1
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      DOI: 10.7554/eLife.18825

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    elifesciences.org/articles/18825
  202. onlinelibrary.wiley.com onlinelibrary.wiley.com
    SNAIL1 employs β‐Catenin‐LEF1 complexes to control colorectal cancer cell invasion and proliferation
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  203. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MicroRNA Profiling During Neural Differentiation of Induced Pluripotent Stem Cells
    1
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  204. www.nature.com www.nature.com
    Maternal vitamin C regulates reprogramming of DNA methylation and germline development
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  205. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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      DOI: 10.1002/brb3.1148

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  206. f1000research.com f1000research.com
    The unfolded protein response and its potential role in Huntington ́s disease elucidated by a systems biology approach
    5
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      DOI: 10.12688/f1000research.6358.1

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      DOI: 10.12688/f1000research.6358.1

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      nif-0000-10445

      DOI: 10.12688/f1000research.6358.1

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      nif-0000-10445

      DOI: 10.12688/f1000research.6358.1

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    f1000research.com/articles/4-103/v1
  207. onlinelibrary.wiley.com onlinelibrary.wiley.com
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      DOI: 10.1002/brb3.1148

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    onlinelibrary.wiley.com/doi/full/10.1002/brb3.1148
  208. www.sciencedirect.com www.sciencedirect.com
    Foxp1 Is Indispensable for Ductal Morphogenesis and Controls the Exit of Mammary Stem Cells from Quiescence
    1
    1. scibot 30 Jul 2021
      RRID:SCR_006442

      DOI: 10.1016/j.devcel.2018.10.001

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    β-Glucan-Induced Trained Immunity Protects against Leishmania braziliensis Infection: a Crucial Role for IL-32
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      RRID:SCR_006442

      DOI: 10.1016/j.celrep.2019.08.004

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    sciencedirect.com/science/article/pii/S2211124719310277
  210. www.nature.com www.nature.com
    RIG-I-like receptors direct inflammatory macrophage polarization against West Nile virus infection
    1
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  211. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Transcriptional profiling of breast cancer‐associated lymphatic vessels reveals VCAM‐1 as regulator of lymphatic invasion and permeability
    1
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  212. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity
    3
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      DOI: 10.7554/eLife.34031

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      RRID:SCR_006442

      DOI: 10.7554/eLife.34031

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      RRID:SCR_006442

      DOI: 10.7554/eLife.34031

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  213. insight.jci.org insight.jci.org
    Transcriptional analysis of Foxp3<sup>+</sup> Tregs and functions of two identified molecules during resolution of ALI
    1
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      DOI: 10.1172/jci.insight.124958

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  214. www.nature.com www.nature.com
    A chemical toolbox for the study of bromodomains and epigenetic signaling
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      DOI: 10.1038/s41467-019-09672-2

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  215. www.sciencedirect.com www.sciencedirect.com
    Ezh2 and Runx1 Mutations Collaborate to Initiate Lympho-Myeloid Leukemia in Early Thymic Progenitors
    1
    1. scibot 28 Jul 2021
      RRID:SCR_006442

      DOI: 10.1016/j.ccell.2018.01.006

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  216. www.sciencedirect.com www.sciencedirect.com
    Exon Junction Complex Shapes the Transcriptome by Repressing Recursive Splicing
    1
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      Bioconductor

      DOI: 10.1016/j.molcel.2018.09.033

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    sciencedirect.com/science/article/pii/S1097276518308323
  217. www.sciencedirect.com www.sciencedirect.com
    Actionable Activating Oncogenic ERBB2/HER2 Transmembrane and Juxtamembrane Domain Mutations
    1
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      Bioconductor

      DOI: 10.1016/j.ccell.2018.09.010

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  218. www.sciencedirect.com www.sciencedirect.com
    BRD4 Inhibition Is Synthetic Lethal with PARP Inhibitors through the Induction of Homologous Recombination Deficiency
    1
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      Bioconductor

      DOI: 10.1016/j.ccell.2018.01.019

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  219. www.sciencedirect.com www.sciencedirect.com
    TIAM1 Antagonizes TAZ/YAP Both in the Destruction Complex in the Cytoplasm and in the Nucleus to Inhibit Invasion of Intestinal Epithelial Cells
    2
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      Bioconductor package edgeR

      DOI: 10.1016/j.ccell.2017.03.007

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      Bioconductor package Rsubread

      DOI: 10.1016/j.ccell.2017.03.007

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  220. www.sciencedirect.com www.sciencedirect.com
    Two Distinct Types of E3 Ligases Work in Unison to Regulate Substrate Ubiquitylation
    2
    1. scibot 27 Jul 2021
      Bioconductor

      DOI: 10.1016/j.cell.2016.07.027

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      SCR_006442

      DOI: 10.1016/j.cell.2016.07.027

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  221. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Resistance to different anthracycline chemotherapeutics elicits distinct and actionable primary metabolic dependencies in breast cancer
    1
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      RRID:SCR_006442

      DOI: 10.7554/eLife.65150

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    ncbi.nlm.nih.gov/pmc/articles/PMC8238502/