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www.sciencedirect.com:5037 www.sciencedirect.com:5037

Stc1-expressing myofibroblasts are a developmentally distinct lineage cleared through apoptosis in the neonatal lung

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1. scibot 23 Dec 2025
  
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  DOI: 10.1016/j.celrep.2025.116750
  
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sciencedirect.com:5037/science/article/pii/S2211124725015220
Nov 2025
www.biorxiv.org www.biorxiv.org

Transcriptional readthrough precedes alternative splicing programs triggered in CML cells by imatinib

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1. scibot 11 Nov 2025
  
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  DOI: 10.1101/2025.11.04.686193
  
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biorxiv.org/content/10.1101/2025.11.04.686193v1
Oct 2025
54.241.53.176 54.241.53.176

SSRN-id4461873-html.html

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1. scibot 23 Oct 2025
  
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  DOI: 10.1038/
  
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54.241.53.176/3fed5d13aeb0c4c59241cb7b1dc11179e997d9dd/deal-et-al-2025-the-transcriptomes-of-hypothalamic-micropunches-reveal-sex-differences-in-regulatory-processes-across-html.html
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Carbonic Anhydrase Inhibition Sensitizes Group 3 Medulloblastoma to Radiation Therapy

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1. scibot 03 Oct 2025
  
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  DOI: 10.1158/0008-5472.CAN-24-3894
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12442109/
Sep 2025
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Requirements for establishment and epigenetic stability of mammalian heterochromatin

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1. scibot 19 Sep 2025
  
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  DOI: 10.1016/j.molcel.2025.08.025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12478525/
Aug 2025
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ribas-et-al-2025-diet-induced-obesity-disrupts-sexually-dimorphic-gene-expression-in-mice-html.html

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1. scibot 08 Aug 2025
  
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52.53.155.43/f75dea67625154a09a43f84fdf769374c4d28813/ribas-et-al-2025-diet-induced-obesity-disrupts-sexually-dimorphic-gene-expression-in-mice-html.html
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ribas-et-al-2025-diet-induced-obesity-disrupts-sexually-dimorphic-gene-expression-in-mice-html.html

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52.53.155.43/34653ce913d76eb04b542583f20b8d57be99f623/ribas-et-al-2025-diet-induced-obesity-disrupts-sexually-dimorphic-gene-expression-in-mice-html.html
Jul 2025
52.53.155.43 52.53.155.43

A proteomics approach to identify COPD-related changes in lung fibroblasts

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1. scibot 22 Jul 2025
  
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52.53.155.43/e4c6d8710e5b264b8fbd88cc890b11b54adf1617/bekker-et-al-2023-a-proteomics-approach-to-identify-copd-related-changes-in-lung-fibroblasts-html.html
Jun 2025
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Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity

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1. scibot 28 Jun 2025
  
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  DOI: 10.1016/j.celrep.2025.115921
  
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sciencedirect.com/science/article/pii/S2211124725006928
May 2025
elifesciences.org elifesciences.org

An antisense oligonucleotide-based strategy to ameliorate cognitive dysfunction in the 22q11.2 Deletion Syndrome

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1. scibot 29 May 2025
  
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  DOI: 10.7554/eLife.103328
  
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elifesciences.org/articles/103328
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Memory T‐Cell Phenotype in Cutaneous T‐Cell Lymphoma Is Modified by Germline Gene Gametocyte Specific Factor 1

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1. scibot 20 May 2025
  
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  DOI: 10.1111/exd.70123
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12078864/
Apr 2025
52.53.155.43 52.53.155.43

snRNA-seq analysis of the moss Physcomitrium patens reveals a conserved cytokinin-ESR module promoting pluripotent stem cell identity

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1. scibot 10 Apr 2025
  
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  DOI: 10.1101/2024.07.31.606100
  
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52.53.155.43/ebea56b5c57b47d3ed306774161acf71df19a431/2024.07.31.606100.full-html.html
Mar 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Effects of environmental salinity on global and endocrine‐specific transcriptomic profiles in the caudal neurosecretory system of salmonid fishes

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1. scibot 27 Mar 2025
  
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  DOI: 10.1096/fj.202403241R
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11923583/
febs.onlinelibrary.wiley.com febs.onlinelibrary.wiley.com

FEBS Press

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1. scibot 25 Mar 2025
  
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  DOI: 10.1002/1878-0261.13820
  
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febs.onlinelibrary.wiley.com/doi/10.1002/1878-0261.13820
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Circulating RNA Markers Associated with Adenoma–Carcinoma Sequence in Colorectal Cancer

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1. scibot 13 Mar 2025
  
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  DOI: 10.3390/ijms26041518
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11855670/
www.sciencedirect.com www.sciencedirect.com

snRNA-seq analysis of the moss Physcomitrium patens identifies a conserved cytokinin-ESR module promoting pluripotent stem cell identity

1
1. scibot 06 Mar 2025
  
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  DOI: 10.1016/j.devcel.2025.02.006
  
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sciencedirect.com/science/article/pii/S1534580725000681
Feb 2025
www.sciencedirect.com www.sciencedirect.com

Homeostatic antiviral protection of the neonatal gut epithelium by interferon lambda

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1. scibot 04 Feb 2025
  
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  DOI: 10.1016/j.celrep.2025.115243
  
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sciencedirect.com/science/article/pii/S2211124725000142
Dec 2024
www.cell.com www.cell.com

Mechanism of enhancing chemotherapy efficacy in pancreatic ductal adenocarcinoma with paricalcitol and hydroxychloroquine

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1. scibot 29 Dec 2024
  
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  DOI: 10.1016/j.xcrm.2024.101881
  
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cell.com/cell-reports-medicine/fulltext/S2666-3791(24)00652-9
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ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF

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1. scibot 21 Dec 2024
  
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  DOI: 10.1016/j.molcel.2024.11.031
  
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sciencedirect.com/science/article/pii/S1097276524009560
onlinelibrary.wiley.com onlinelibrary.wiley.com

Age-Related ECM Stiffness Mediates TRAIL Activation in Muscle Stem Cell Differentiation

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1. scibot 06 Dec 2024
  
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  DOI: 10.1002/adbi.202400334
  
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onlinelibrary.wiley.com/doi/10.1002/adbi.202400334
Oct 2024
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H3.3 G34W Promotes Growth and Impedes Differentiation of Osteoblast-Like Mesenchymal Progenitors in Giant Cell Tumor of Bone

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1. scibot 02 Oct 2024
  
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  DOI: 10.1158/2159-8290.CD-20-0461
  
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aacrjournals.org/cancerdiscovery/article/10/12/1968/2414/H3-3-G34W-Promotes-Growth-and-Impedes
Sep 2024
elifesciences.org elifesciences.org

Muscle-resident mesenchymal progenitors sense and repair peripheral nerve injury via the GDNF-BDNF axis

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1. scibot 28 Sep 2024
  
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  DOI: 10.7554/eLife.97662
  
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elifesciences.org/articles/97662
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Single-cell and bulk transcriptional profiling of mouse ovaries reveals novel genes and pathways associated with DNA damage response in oocytes

1
1. scibot 27 Sep 2024
  
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  DOI: 10.1016/j.ydbio.2024.09.007
  
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sciencedirect.com/science/article/pii/S0012160624002343
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Atypical cellular responses mediated by intracellular constitutive active TrkB (NTRK2) kinase domains and a solely intracellular NTRK2-fusion oncogene

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1. scibot 25 Sep 2024
  
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  DOI: 10.1038/s41417-024-00809-0
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11405271/
Jul 2024
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ALDH1A3-acetaldehyde metabolism potentiates transcriptional heterogeneity in melanoma

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1. scibot 18 Jul 2024
  
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  DOI: 10.1016/j.celrep.2024.114406
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11290356/
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Synaptic plasticity in human thalamocortical assembloids

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  DOI: 10.1016/j.celrep.2024.114503
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11407288/
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Mitochondrial perturbation in the intestine causes microbiota-dependent injury and gene signatures discriminative of inflammatory disease

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1. scibot 16 Jul 2024
  
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  DOI: 10.1016/j.chom.2024.06.013
  
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sciencedirect.com/science/article/pii/S1931312824002312
Jun 2024
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A comparative analysis of paxillin and Hic-5 proximity interactomes

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1. scibot 06 Jun 2024
  
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  DOI: 10.1002/cm.21878
  
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onlinelibrary.wiley.com/doi/10.1002/cm.21878
May 2024
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ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF

2
1. scibot 29 May 2024
  
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  DOI: 10.1101/2024.03.08.583864
  
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52.53.155.43/18a5f967080cacc79c7f5cca9d1b0be744600675/2024.03.08.583864v1.full-html.html
Apr 2024
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A senescence restriction point acting on chromatin integrates oncogenic signals

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  DOI: 10.1016/j.celrep.2024.114044
  
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sciencedirect.com/science/article/pii/S2211124724003723
Mar 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Quantitative proteome dynamics across embryogenesis in a model chordate

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  DOI: 10.1016/j.isci.2024.109355
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10951915/
Feb 2024
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Single-cell and bulk transcriptional profiling of mouse ovaries reveals novel genes and pathways associated with DNA damage response in oocytes

1
1. scibot 28 Feb 2024
  
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  DOI: 10.1101/2024.02.02.578648
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10862846/
52.53.155.43 52.53.155.43

can-23-1129-html.html

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1. scibot 23 Feb 2024
  
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  DOI: 10.1158/0008-5472.can-23-1129
  
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52.53.155.43/f18faff86a38ad159824c95dcf032e1a8bb0e968/133-html.html
dx.doi.org dx.doi.org

Active natural compounds perturb the melanoma risk-gene network

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1. scibot 03 Feb 2024
  
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  DOI: 10.1093/g3journal/jkad274
  
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dx.doi.org/10.1093/g3journal/jkad274
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Extracellular matrix protein composition dynamically changes during murine forelimb development

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Jan 2024
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Leveraging tissue-specific enhancer-target gene regulatory networks identifies enhancer somatic mutations that functionally impact lung cancer

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  DOI: 10.1158/0008-5472.CAN-23-1129
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10758689/
Dec 2023
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Integrated multi-omics profiling to dissect the spatiotemporal evolution of metastatic hepatocellular carcinoma

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Genetic swamping of the critically endangered Scottish wildcat was recent and accelerated by disease

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can-23-1129-html.html

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52.53.155.43/f18faff86a38ad159824c95dcf032e1a8bb0e968/133-html.html
Nov 2023
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Detection of early prognostic biomarkers for metastasis of Ewing's sarcoma in pediatric patients

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Oct 2023
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Single-cell transcriptomics illuminates regulatory steps driving anterior-posterior patterning of Drosophila embryonic mesoderm

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1. scibot 27 Oct 2023
  
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Complement factor D targeting protects endotheliopathy in organoid and monkey models of COVID-19

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Sep 2023
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Discordant interactions between YAP1 and polycomb group protein SCML2 determine cell fate

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Metabolic signature and proteasome activity controls synovial migration of CDC42hi CD14+ cells in rheumatoid arthritis

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Aug 2023
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Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks

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Jul 2023
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A network-based approach reveals long non-coding RNAs associated with disease activity in lupus nephritis: key pathways for flare and potential biomarkers to be used as liquid biopsies

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Single-cell transcriptome atlas of Drosophila gastrula 2.0

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Extracellular Vesicle Secretion by Leukemia Cells In Vivo Promotes CLL Progression by Hampering Antitumor T-cell Responses

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ncbi.nlm.nih.gov/pmc/articles/PMC9816815/
Jun 2023
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Transcriptomic landscape of early hair follicle and epidermal development

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Metabolic signature and proteasome activity controls synovial migration of CDC42hiCD14+ cells in rheumatoid arthritis

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medrxiv.org/content/10.1101/2023.06.15.23291416v1
May 2023
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Adipose tissue plasticity in pheochromocytoma patients suggests a role of the splicing machinery in human adipose browning

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ncbi.nlm.nih.gov/pmc/articles/PMC10209542/
Apr 2023
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TIAR and FMRP shape pro-survival nascent proteome of leukemia cells in the bone marrow microenvironment

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Mar 2023
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A central chaperone-like role for 14-3-3 proteins in human cells

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The P-body protein 4E-T represses translation to regulate the balance between cell genesis and establishment of the postnatal NSC pool

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Protein network analysis links the NSL complex to Parkinson's disease and mitochondrial biology

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  DOI: 10.1101/2023.01.27.524249
  
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Skeletal dysplasia-causing TRPV4 mutations suppress the hypertrophic differentiation of human iPSC-derived chondrocytes

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  DOI: 10.7554/eLife.71154
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9949800/
Jan 2023
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Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

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ncbi.nlm.nih.gov/pmc/articles/PMC9827110/
Sep 2022
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Combined – whole blood and skin fibroblasts- transcriptomic analysis in Psoriatic Arthritis reveals molecular signatures of activity, resistance and early response to treatment

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ncbi.nlm.nih.gov/pmc/articles/PMC9493103/
Jul 2022
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can-21-3713-html.html

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  DOI: 10.1158/0008-5472.can-21-3713
  
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Extracellular vesicles from thyroid cancer harbor a functional machinery involved in extracellular matrix remodeling

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Biogenic action of Lactobacillus plantarum SBT2227 promotes sleep in Drosophila melanogaster

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  DOI: 10.1016/j.isci.2022.104626
  
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May 2022
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Time-course of host cell transcription during the HTLV-1 transcriptional burst

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1. scibot 28 May 2022
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9135347/
Apr 2022
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A conditional gene-based association framework integrating isoform-level eQTL data reveals new susceptibility genes for schizophrenia

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ncbi.nlm.nih.gov/pmc/articles/PMC9005191/
Feb 2022
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Single-cell analysis of human glioma and immune cells identifies S100A4 as an immunotherapy target

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  DOI: 10.1038/s41467-022-28372-y
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8828877/
Jan 2022
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Genomic loci mispositioning in Tmem120a knockout mice yields latent lipodystrophy

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  DOI: 10.1038/s41467-021-27869-2
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8758788/
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Role of distinct fibroblast lineages and immune cells in dermal repair following UV radiation-induced tissue damage

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ncbi.nlm.nih.gov/pmc/articles/PMC8747514/
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Regulatory T cell transcriptomic reprogramming characterizes adverse events by checkpoint inhibitors in solid tumors

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  DOI: 10.1158/2326-6066.CIR-20-0969
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7611354/
Dec 2021
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Proximity labeling identifies LOTUS domain proteins that promote the formation of perinuclear germ granules in C. elegans

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  DOI: 10.7554/eLife.72276
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8616582/
Jul 2021
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Single-cell transcriptomic heterogeneity in invasive ductal and lobular breast cancer cells

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1. scibot 16 Jul 2021
  
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  DOI: 10.1158/0008-5472.CAN-20-0696
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7856056/
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A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation

1
1. scibot 07 Jul 2021
  
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  RRID:SCR_006809
  
  DOI: 10.1016/j.cell.2021.06.009
  
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cell.com/cell/fulltext/S0092-8674(21)00710-8
Jun 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

SIRT1 regulates sphingolipid metabolism and neural differentiation of mouse embryonic stem cells through c-Myc-SMPDL3B

1
1. scibot 26 Jun 2021
  
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  RRID:SCR_006809
  
  DOI: 10.7554/eLife.67452
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8216717/
May 2021
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Integrating protein networks and machine learning for disease stratification in the Hereditary Spastic Paraplegias

1
1. scibot 14 May 2021
  
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  RRID:SCR_006809
  
  DOI: 10.1016/j.isci.2021.102484
  
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sciencedirect.com/science/article/pii/S2589004221004521
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Morphological and genomic shifts in mole-rat ‘queens’ increase fecundity but reduce skeletal integrity

1
1. scibot 13 May 2021
  
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  RRID:SCR_006809
  
  DOI: 10.7554/eLife.65760
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8104968/
Feb 2021
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Population-scale proteome variation in human induced pluripotent stem cells

1
1. scibot 26 Feb 2021
  
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  RRID:SCR_006809
  
  DOI: 10.7554/eLife.57390
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7447446/
viahtml.hypothes.is viahtml.hypothes.is

Virus infection of the CNS disrupts the immune-neural-synaptic axis via induction of pleiotropic gene regulation of host responses

1
1. scibot 25 Feb 2021
  
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  RRID:SCR_006809
  
  DOI: 10.7554/eLife.62273
  
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viahtml.hypothes.is/articles/62273
Sep 2020
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PRL3-DDX21 Transcriptional Control of Endolysosomal Genes Restricts Melanocyte Stem Cell Differentiation

1
1. scibot 26 Sep 2020
  
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  RRID:SCR_006809
  
  DOI: 10.1016/j.devcel.2020.06.013
  
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sciencedirect.com/science/article/pii/S1534580720304639
www.cell.com www.cell.com

Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains

1
1. scibot 17 Sep 2020
  
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  RRID:SCR_006809
  
  DOI: 10.1016/j.molcel.2018.11.006
  
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cell.com/molecular-cell/abstract/S1097-2765(18)30948-1
pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov

Single-Cell RNA-Seq Reveals Cellular Hierarchies and Impaired Developmental Trajectories in Pediatric Ependymoma

1
1. scibot 04 Sep 2020
  
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  RRID:SCR_006809
  
  DOI: 10.1016/j.ccell.2020.06.004
  
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pubmed.ncbi.nlm.nih.gov/32663469/
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Population-scale proteome variation in human induced pluripotent stem cells

1
1. scibot 03 Sep 2020
  
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  RRID:SCR_006809
  
  DOI: 10.7554/eLife.57390
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7447446/
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Medulloblastoma Arises from the Persistence of a Rare and Transient Sox2+ Granule Neuron Precursor

1
1. scibot 03 Sep 2020
  
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  RRID:SCR_006809
  
  DOI: 10.1016/j.celrep.2020.03.075
  
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sciencedirect.com/science/article/pii/S2211124720304010
Jan 2020
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A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_006809
  
  DOI: 10.1016/j.neuron.2019.06.011
  
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sciencedirect.com/science/article/pii/S0896627319305616
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Untitled document

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_006809
  
  DOI: 10.1016/j.molcel.2018.11.006
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6375729/
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Untitled document

1
1. scibot 12 Jan 2020
  
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  RRID:SCR_006809
  
  DOI: 10.1016/j.molcel.2018.11.006
  
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sciencedirect.com/science/article/pii/S1097276518309481
Nov 2017
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Extensive cargo identification reveals distinct biological roles of the 12 importin pathways

1
1. scibot 08 Nov 2017
  
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  SCR_006809
  
  Curator: @Zeljana_Babic
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5305215/

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