155 Matching Annotations
  1. Apr 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Modeling non-genetic information dynamics in cells using reservoir computing
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    1. scibot 20 Apr 2024
      RRID:SCR_008624

      DOI: 10.1016/j.isci.2024.109614

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    ncbi.nlm.nih.gov/pmc/articles/PMC11022048/
  3. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Agent-based models under uncertainty
    1
    1. scibot 11 Apr 2024
      RRID:SCR_008624

      DOI: 10.12688/f1000research.135249.3

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    ncbi.nlm.nih.gov/pmc/articles/PMC10988201/
  4. Mar 2024
  5. www.sciencedirect.com www.sciencedirect.com
    Stem-loop-induced ribosome queuing in the uORF2/ATF4 overlap fine-tunes stress-induced human ATF4 translational control
    1
    1. scibot 21 Mar 2024
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      DOI: 10.1016/j.celrep.2024.113976

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    sciencedirect.com/science/article/pii/S2211124724003048
  6. www.nature.com www.nature.com
    Combinatorial selective ER-phagy remodels the ER during neurogenesis
    1
    1. scibot 07 Mar 2024
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      DOI: 10.1038/s41556-024-01356-4

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    nature.com/articles/s41556-024-01356-4
  7. www.sciencedirect.com www.sciencedirect.com
    Sexually dimorphic control of affective state processing and empathic behaviors
    1
    1. scibot 05 Mar 2024
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      DOI: 10.1016/j.neuron.2024.02.001

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    sciencedirect.com/science/article/pii/S0896627324000850
  8. Feb 2024
  9. www.sciencedirect.com www.sciencedirect.com
    SARS-CoV-2-infection- and vaccine-induced antibody responses are long lasting with an initial waning phase followed by a stabilization phase
    2
    1. scibot 23 Feb 2024
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      DOI: 10.1016/j.immuni.2024.01.017

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    2. scibot 23 Feb 2024
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      DOI: 10.1016/j.immuni.2024.01.017

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    sciencedirect.com/science/article/pii/S1074761324000438
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Female vs. male relative fatality risk in fatal motor vehicle crashes in the US, 1975–2020
    1
    1. scibot 15 Feb 2024
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      DOI: 10.1371/journal.pone.0297211

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    ncbi.nlm.nih.gov/pmc/articles/PMC10861033/
  11. www.sciencedirect.com www.sciencedirect.com
    Molecular alterations in metaphase chromosomes induced by bleomycin
    1
    1. scibot 13 Feb 2024
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      DOI: 10.1016/j.saa.2024.124026

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    sciencedirect.com/science/article/pii/S1386142524001926
  12. www.sciencedirect.com www.sciencedirect.com
    Protocol to train a support vector machine for the automatic curation of bacterial cell detections in microscopy images
    1
    1. scibot 09 Feb 2024
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      DOI: 10.1016/j.xpro.2024.102868

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    sciencedirect.com/science/article/pii/S2666166724000339
  13. www.sciencedirect.com www.sciencedirect.com
    PUF partner interactions at a conserved interface shape the RNA-binding landscape and cell fate in Caenorhabditis elegans
    1
    1. scibot 02 Feb 2024
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      DOI: 10.1016/j.devcel.2024.01.005

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    sciencedirect.com/science/article/pii/S1534580724000054
  14. Jan 2024
  15. www.nature.com www.nature.com
    Cell-type-directed design of synthetic enhancers
    1
    1. scibot 25 Jan 2024
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      DOI: 10.1038/s41586-023-06936-2

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    nature.com/articles/s41586-023-06936-2
  16. www.sciencedirect.com www.sciencedirect.com
    Descending control and regulation of spontaneous flight turns in Drosophila
    1
    1. scibot 19 Jan 2024
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      DOI: 10.1016/j.cub.2023.12.047

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    sciencedirect.com/science/article/pii/S0960982223017475
  17. www.sciencedirect.com www.sciencedirect.com
    Discrete prefrontal neuronal circuits determine repeated stress-induced behavioral phenotypes in male mice
    1
    1. scibot 19 Jan 2024
      RRID:SCR_008624

      DOI: 10.1016/j.neuron.2023.12.004

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    sciencedirect.com/science/article/pii/S0896627323009340
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Effect of intracranial electrical stimulation on dynamic functional connectivity in medically refractory epilepsy
    1
    1. scibot 10 Jan 2024
      RRID:SCR_008624

      DOI: 10.3389/fnhum.2023.1295326

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    ncbi.nlm.nih.gov/pmc/articles/PMC10765510/
  19. Dec 2023
  20. www.sciencedirect.com www.sciencedirect.com
    Cross-linking breast tumor transcriptomic states and tissue histology
    1
    1. scibot 20 Dec 2023
      RRID:SCR_008624

      DOI: 10.1016/j.xcrm.2023.101313

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    sciencedirect.com/science/article/pii/S2666379123005074
  21. www.sciencedirect.com www.sciencedirect.com
    Molecular determinants of the crosstalk between endosomal microautophagy and chaperone-mediated autophagy
    1
    1. scibot 07 Dec 2023
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      DOI: 10.1016/j.celrep.2023.113529

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    sciencedirect.com/science/article/pii/S2211124723015413
  22. www.sciencedirect.com www.sciencedirect.com
    Somatic hypermutation introduces bystander mutations that prepare SARS-CoV-2 antibodies for emerging variants
    1
    1. scibot 02 Dec 2023
      RRID:SCR_008624

      DOI: 10.1016/j.immuni.2023.11.004

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    sciencedirect.com/science/article/pii/S1074761323004855
  23. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Intrinsically disordered proteins and liquid–liquid phase separation in SARS-CoV-2 interactomes
    1
    1. scibot 01 Dec 2023
      RRID:SCR_008624

      DOI: 10.1002/jcb.30502

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    onlinelibrary.wiley.com/doi/10.1002/jcb.30502
  24. Nov 2023
  25. www.sciencedirect.com www.sciencedirect.com
    Reproducible and fully automated testing of nocifensive behavior in mice
    1
    1. scibot 22 Nov 2023
      RRID:SCR_008624

      DOI: 10.1016/j.crmeth.2023.100650

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    sciencedirect.com/science/article/pii/S2667237523003211
  26. link.springer.com link.springer.com
    Combined analytical approach empowers precise spectroscopic interpretation of subcellular components of pancreatic cancer cells
    1
    1. scibot 03 Nov 2023
      RRID:SCR_008624

      DOI: 10.1007/s00216-023-04997-w

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    link.springer.com/article/10.1007/s00216-023-04997-w
  27. Oct 2023
  28. link.springer.com link.springer.com
    A spatio-temporal image analysis for growth of indeterminate pulmonary nodules detected by CT scan
    1
    1. scibot 28 Oct 2023
      RRID:SCR_008624

      DOI: 10.1007/s12194-023-00750-1

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    link.springer.com/article/10.1007/s12194-023-00750-1
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    In silico discovery of repetitive elements as key sequence determinants of 3D genome folding
    1
    1. scibot 25 Oct 2023
      RRID:SCR_008624

      DOI: 10.1016/j.xgen.2023.100410

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    ncbi.nlm.nih.gov/pmc/articles/PMC10589630/
  30. 52.53.155.43 52.53.155.43
    The T766M-EGFR lung cancer mutation promotes tumor growth by exploiting newfound assembly mechanisms in ligand-free EGFR oligomers
    1
    1. scibot 14 Oct 2023
      RRID:SCR_008624

      DOI: 10.1101/2023.06.16.545259

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    52.53.155.43/e45e39aa6be90d4518c1365e2458466145a6420b/2023.06.16.545259v2.full-html.html
  31. www.sciencedirect.com www.sciencedirect.com
    MEG frequency tagging reveals a grid-like code during attentional movements
    1
    1. scibot 13 Oct 2023
      RRID:SCR_008624

      DOI: 10.1016/j.celrep.2023.113209

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    sciencedirect.com/science/article/pii/S2211124723012214
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Personalised simulation of hemodynamics in cerebrovascular disease: lessons learned from a study of diagnostic accuracy
    1
    1. scibot 06 Oct 2023
      RRID:SCR_008624

      DOI: 10.3389/fneur.2023.1230402

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    ncbi.nlm.nih.gov/pmc/articles/PMC10523575/
  33. Sep 2023
  34. www.sciencedirect.com www.sciencedirect.com
    The Drosophila ecdysone receptor promotes or suppresses proliferation according to ligand level
    1
    1. scibot 30 Sep 2023
      RRID:SCR_008624

      DOI: 10.1016/j.devcel.2023.08.032

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    sciencedirect.com/science/article/pii/S1534580723004604
  35. www.sciencedirect.com www.sciencedirect.com
    Protocol to analyze fundus images for multidimensional quality grading and real-time guidance using deep learning techniques
    1
    1. scibot 30 Sep 2023
      RRID:SCR_008624

      DOI: 10.1016/j.xpro.2023.102565

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    sciencedirect.com/science/article/pii/S2666166723005324
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A database of restriction maps to expand the utility of bacterial artificial chromosomes
    1
    1. scibot 28 Sep 2023
      RRID:SCR_008624

      DOI: 10.46471/gigabyte.93

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    ncbi.nlm.nih.gov/pmc/articles/PMC10518450/
  37. www.sciencedirect.com www.sciencedirect.com
    Utilizing directed evolution to interrogate and optimize CRISPR/Cas guide RNA scaffolds
    1
    1. scibot 27 Sep 2023
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      DOI: 10.1016/j.chembiol.2023.06.007

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    sciencedirect.com/science/article/pii/S2451945623001848
  38. www.sciencedirect.com www.sciencedirect.com
    Increasing Familiarity With the Heartbeat Counting Task Does Not Affect Performance
    1
    1. scibot 27 Sep 2023
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      DOI: 10.1016/j.biopsycho.2023.108662

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    sciencedirect.com/science/article/pii/S0301051123001801
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mitochondrial network adaptations of microglia reveal sex-specific stress response after injury and UCP2 knockout
    1
    1. scibot 22 Sep 2023
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      DOI: 10.1016/j.isci.2023.107780

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    ncbi.nlm.nih.gov/pmc/articles/PMC10507162/
  40. www.sciencedirect.com www.sciencedirect.com
    Brain-region-specific changes in neurons and glia and dysregulation of dopamine signaling in Grin2a mutant mice
    1
    1. scibot 01 Sep 2023
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      DOI: 10.1016/j.neuron.2023.08.004

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    sciencedirect.com/science/article/pii/S0896627323005858
  41. Aug 2023
  42. www.biorxiv.org www.biorxiv.org
    High-level prediction errors in low-level visual cortex
    1
    1. scibot 27 Aug 2023
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      DOI: 10.1101/2023.08.21.554095

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    biorxiv.org/content/10.1101/2023.08.21.554095v1
  43. www.frontiersin.org www.frontiersin.org
    Molecular Characterization of Enterococcus Isolates From Different Sources in Estonia Reveals Potential Transmission of Resistance Genes Among Different Reservoirs
    1
    1. scibot 14 Aug 2023
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      DOI: 10.3389/fmicb.2021.601490

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    frontiersin.org/article/10.3389/fmicb.2021.601490/full
  44. www.sciencedirect.com www.sciencedirect.com
    Sex shapes cell-type-specific transcriptional signatures of stress exposure in the mouse hypothalamus
    1
    1. scibot 03 Aug 2023
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      DOI: 10.1016/j.celrep.2023.112874

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    sciencedirect.com/science/article/pii/S2211124723008859
  45. Jul 2023
  46. www.sciencedirect.com www.sciencedirect.com
    Structural definition of HLA class II-presented SARS-CoV-2 epitopes reveals a mechanism to escape pre-existing CD4+ T cell immunity
    1
    1. scibot 21 Jul 2023
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      DOI: 10.1016/j.celrep.2023.112827

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    sciencedirect.com/science/article/pii/S2211124723008380
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Low-level repressive histone marks fine-tune gene transcription in neural stem cells
    1
    1. scibot 15 Jul 2023
      RRID:SCR_008624

      DOI: 10.7554/eLife.86127

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    ncbi.nlm.nih.gov/pmc/articles/PMC10344426/
  48. Jun 2023
  49. open-research-europe.ec.europa.eu open-research-europe.ec.europa.eu
    MultiOptForest: An interactive multi-objective optimization tool ...
    1
    1. scibot 26 Jun 2023
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      DOI: 10.12688/openreseurope.15812.1

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    open-research-europe.ec.europa.eu/articles/3-103
  50. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Reproducibility and FAIR principles: the case of a segment polarity network model
    1
    1. scibot 22 Jun 2023
      RRID:SCR_008624

      DOI: 10.3389/fcell.2023.1201673

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    ncbi.nlm.nih.gov/pmc/articles/PMC10279958/
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Microscope-Cockpit: Python-based bespoke microscopy for bio-medical science
    1
    1. scibot 08 Jun 2023
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      DOI: 10.12688/wellcomeopenres.16610.1

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  52. May 2023
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    Formation and three-dimensional architecture of Leishmania adhesion in the sand fly vector
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    Reconstruction of a polyclonal ADCC antibody repertoire from an HIV-1 non-transmitting mother
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    Examining asymmetric pairwise pre-reaction and transition states in enzymatic catalysis by molecular dynamics simulation and quantum mechanics/molecular mechanics calculation
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  56. Apr 2023
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    Assessing structure and disorder prediction tools for de novo emerged proteins in the age of machine learning
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    Intrinsic Theta Oscillation in the Attractor Network of Grid Cells
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  59. Mar 2023
  60. journals.plos.org journals.plos.org
    PreprintMatch: A tool for preprint to publication detection shows global inequities in scientific publication
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  61. Feb 2023
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    LabGym: Quantification of user-defined animal behaviors using learning-based holistic assessment
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    Social behavioral profiling by unsupervised deep learning reveals a stimulative effect of dopamine D3 agonists on zebrafish sociality
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    Variabilities in global DNA methylation and β-sheet richness establish spectroscopic landscapes among subtypes of pancreatic cancer
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    Graft-versus-host disease is locally maintained in target tissues by resident progenitor-like T cells
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  66. Jan 2023
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    Centromeres as universal hotspots of DNA breakage, driving RAD51-mediated recombination during quiescence
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    Improved ANAP incorporation and VCF analysis reveal details of P2X7 current facilitation and a limited conformational interplay between ATP binding and the intracellular ballast domain
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  69. Dec 2022
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  73. Nov 2022
  74. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A role for the centrosome in regulating the rate of neuronal efferocytosis by microglia in vivo
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  76. Oct 2022
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    A cis-regulatory lexicon of DNA motif combinations mediating cell-type-specific gene regulation
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  78. Sep 2022
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    Experimental reproducibility limits the correlation between mRNA and protein abundances in tumor proteomic profiles
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    Design principles to assemble drug combinations for effective tuberculosis therapy using interpretable pairwise drug response measurements
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  82. Aug 2022
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    SMNDC1 links chromatin remodeling and splicing to regulate pancreatic hormone expression
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    SARS-CoV-2 Omicron sublineages exhibit distinct antibody escape patterns
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  87. Jul 2022
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    Comprehensive fitness landscape of SARS-CoV-2 Mpro reveals insights into viral resistance mechanisms
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    Investigating anticancer potency of in vitro propagated endemic Thymus cilicicus Boiss. & Bal. extract on human lung, breast, and prostate cancer cell lines
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  90. Jun 2022
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    A systematic characterization of microglia-like cell occurrence during retinal organoid differentiation.
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    A deep learning based CT image analytics protocol to identify lung adenocarcinoma category and high-risk tumor area
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    EpiTopics: A dynamic machine learning model to predict and inform non-pharmacological public health interventions from global news reports
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  94. Apr 2022
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    Subversion of serotonin-receptor signaling in osteoblasts by kynurenine drives Acute Myeloid Leukemia
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  96. Mar 2022
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    A weakened recurrent circuit in the hippocampus of Rett syndrome mice disrupts long-term memory representations
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  100. Feb 2022
  101. elifesciences.org elifesciences.org
    Structural basis of Plasmodium vivax inhibition by antibodies binding to the circumsporozoite protein repeats
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    A population of descending neurons that regulates the flight motor of Drosophila
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  103. Dec 2021
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    Distinct molecular pathways govern presynaptic homeostatic plasticity
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    Anesthesia disrupts distance, but not direction, of path integration memory
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  106. Nov 2021
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    Multisensory coding of angular head velocity in the retrosplenial cortex
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  123. Jul 2021
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  131. Jun 2021
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  133. May 2021
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    Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells
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  148. Dec 2020
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  152. Oct 2020
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    VIP interneurons in mouse primary visual cortex selectively enhance responses to weak but specific stimuli
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  154. Sep 2020
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    Dopamine Buffering Capacity Imaging: A Pharmacodynamic fMRI Method for Staging Parkinson Disease
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  159. Jan 2020
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    The Dynamics of Cytoplasmic mRNA Metabolism
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  161. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Action in auctions: neural and computational mechanisms of bidding behaviour
    1
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      DOI: 10.1111/ejn.14492

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  162. www.sciencedirect.com www.sciencedirect.com
    Flies Regulate Wing Motion via Active Control of a Dual-Function Gyroscope
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      DOI: 10.1016/j.cub.2019.08.065

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  163. www.sciencedirect.com www.sciencedirect.com
    Tricalbin-Mediated Contact Sites Control ER Curvature to Maintain Plasma Membrane Integrity
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      DOI: 10.1016/j.devcel.2019.10.018

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  164. www.jneurosci.org www.jneurosci.org
    Role of TRPM8 channels in altered cold sensitivity of corneal primary sensory neurons induced by axonal damage
    1
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      DOI: 10.1523/JNEUROSCI.0654-19.2019

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  165. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Task‐dependent responses to muscle vibration during reaching
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      DOI: 10.1111/ejn.14292

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  166. www.eneuro.org www.eneuro.org
    Fast, flexible closed-loop feedback: Tracking movement in “real-millisecond-time”
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      RRID:SCR_008624

      DOI: 10.1523/ENEURO.0147-19.2019

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  167. www.sciencedirect.com www.sciencedirect.com
    Osh Proteins Control Nanoscale Lipid Organization Necessary for PI(4,5)P2 Synthesis
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      DOI: 10.1016/j.molcel.2019.06.037

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  168. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Suppressed Sensory Response to Predictable Object Stimuli throughout the Ventral Visual Stream
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      DOI: 10.1523/JNEUROSCI.3421-17.2018

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  169. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Statistical learning attenuates visual activity only for attended stimuli
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      DOI: 10.7554/eLife.47869

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  170. www.sciencedirect.com www.sciencedirect.com
    MicroRNAs Cause Accelerated Decay of Short-Tailed Target mRNAs
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      DOI: 10.1016/j.molcel.2019.12.004

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  171. www.sciencedirect.com www.sciencedirect.com
    Functional Translatome Proteomics Reveal Converging and Dose-Dependent Regulation by mTORC1 and eIF2α
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      DOI: 10.1016/j.molcel.2019.11.010

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  172. Apr 2019
  173. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A functional circuit model of interaural time difference processing
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  174. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A model for attentional information routing through coherence predicts biased competition and multistable perception
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  175. Nov 2018
  176. www.sciencedirect.com www.sciencedirect.com
    Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes
    1
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  177. www.sciencedirect.com www.sciencedirect.com
    Sun Navigation Requires Compass Neurons in Drosophila
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    sciencedirect.com/science/article/pii/S0960982218309011
  178. www.sciencedirect.com www.sciencedirect.com
    Two Forms of Synaptic Depression Produced by Differential Neuromodulation of Presynaptic Calcium Channels
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    sciencedirect.com/science/article/pii/S0896627318306287
  179. www.frontiersin.org www.frontiersin.org
    Untitled document
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    frontiersin.org/article/10.3389/fnins.2018.00316/full
  180. www.sciencedirect.com www.sciencedirect.com
    Free Energy Landscape for the Entire Transport Cycle of Triose-Phosphate/Phosphate Translocator
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    sciencedirect.com/science/article/pii/S096921261830176X
  181. www.sciencedirect.com www.sciencedirect.com
    FGF20-Expressing, Wnt-Responsive Olfactory Epithelial Progenitors Regulate Underlying Turbinate Growth to Optimize Surface Area
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    sciencedirect.com/science/article/pii/S1534580718305951
  182. www.jneurosci.org www.jneurosci.org
    Role of the Excitability Brake Potassium Current IKD in Cold Allodynia Induced by Chronic Peripheral Nerve Injury
    1
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    jneurosci.org/content/37/12/3109
  183. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Neural Responses to Naturalistic Clips of Behaving Animals in Two Different Task Contexts
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC5962655/
  184. elifesciences.org elifesciences.org
    Segmentation of the zebrafish axial skeleton relies on notochord sheath cells and not on the segmentation clock
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    elifesciences.org/articles/33843
  185. www.sciencedirect.com www.sciencedirect.com
    Different Neuronal Activity Patterns Induce Different Gene Expression Programs
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  186. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mouse color and wavelength-specific luminance contrast sensitivity are non-uniform across visual space.
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  187. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Eye‐specific segregation and differential fasciculation of developing retinal ganglion cell axons in the mouse visual pathway
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    onlinelibrary.wiley.com/doi/10.1002/cne.24392/full
  188. Nov 2017
  189. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    COMPASS: Continuous Open Mouse Phenotyping of Activity and Sleep Status
    1
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      Matplotlib

      Curator: @Zeljana_Babic

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    ncbi.nlm.nih.gov/pmc/articles/PMC5140024/
  190. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Target DNA bending by the Mu transpososome promotes careful transposition and prevents its reversal
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    ncbi.nlm.nih.gov/pmc/articles/PMC5357137/
  191. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Feature Detection in Visual Cortex during Different Functional States
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      SCR_008624

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    ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
  192. www.sciencedirect.com www.sciencedirect.com
    Mechanism of Substrate Translocation in an Alternating Access Transporter
    1
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      Matplotlib

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  193. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Early dysfunction and progressive degeneration of the subthalamic nucleus in mouse models of Huntington's disease
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC5199195/
  194. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A model for attentional information routing through coherence predicts biased competition and multistable perception
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      nif-0000-31991

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