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Prognostic and Predictive Value of the Clearseq1–4 Tumor Microenvironment Classification in Localized and Metastatic Clear-Cell Renal Cell Carcinoma

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pmc.ncbi.nlm.nih.gov/articles/PMC13095203/
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Supplementary file-html.html

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54.241.53.176/4d06b1922c474219b22e5a7827bebd122dca3f2f/Supplementary file-html.html
Apr 2026
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Epigenetic Instability Based Metrics in Cell-Free DNA for Early Cancer Detection

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pmc.ncbi.nlm.nih.gov/articles/PMC13080316/
Mar 2026
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Cell-cell communication as underlying principle governing color pattern formation in teleost fishes

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1. scibot 31 Mar 2026
  
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pmc.ncbi.nlm.nih.gov/articles/PMC13031650/
Jan 2026
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Altered hepatic metabolism in Down syndrome

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sciencedirect.com/science/article/pii/S2211124725016079
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Multi-omics identifies oxidative stress, prothrombotic pathways, and lactoperoxidase variants as key factors in COVID-19 severity

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Dec 2025
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10.22074_cellj.2025.2059066.1843-html.html

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54.241.53.176/718d21e0326ee078dddd6f3e33c4c6ae2001a870/10.22074_cellj.2025.2059066.1843-html.html
Nov 2025
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HIF-2-dependent Regulation of PTHrP and Paraneoplastic Hypercalcemia in Aggressive Clear Cell Renal Cell Carcinoma

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1. scibot 26 Nov 2025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12642454/
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Genetic architecture of the murine red blood cell proteome reveals central role of hemoglobin beta cysteine 93 in maintaining redox balance

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Oct 2025
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Integrative machine learning and transcriptomic analysis identifies key molecular targets in MNPN-associated oral squamous cell carcinoma pathogenesis

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1. scibot 11 Oct 2025
  
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  DOI: 10.3389/fbinf.2025.1664576
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12508658/
Aug 2025
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Intrahepatic Microbial Heterogeneity in Multifocal Hepatocellular Carcinoma and Its Association with Host Genomic and Transcriptomic Alterations

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pmc.ncbi.nlm.nih.gov/articles/PMC12319405/
Jul 2025
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Cellular crosstalk mediated by TGF-β drives epithelial-mesenchymal transition in patient-derived multi-compartment biliary organoids

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1-s2.0-S2589004225013914-main-html.html

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52.53.155.43/90007a778f462697c048df1da24432bb37ed810f/1-s2.0-S2589004225013914-main-html.html
May 2025
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High expression of THY1 is a prognostic marker for gastric Cancer: Deciphering its transcriptional regulation as a component of the Epithelial–mesenchymal transition

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sciencedirect.com/science/article/pii/S2405580825001372
Mar 2025
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Multi-cohort cerebrospinal fluid proteomics identifies robust molecular signatures across the Alzheimer disease continuum

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Characterization of the Temporal Dynamics of the Endothelial–Mesenchymal-like Transition Induced by Soluble Factors from Dengue Virus Infection in Microvascular Endothelial Cells

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  DOI: 10.3390/ijms26052139
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11900998/
Feb 2025
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Fusion oncoproteins and cooperating mutations define disease phenotypes in NUP98-rearranged leukemia

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  DOI: 10.1101/2025.01.21.25320683
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11838931/
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Using multiomic integration to improve blood biomarkers of major depressive disorder: a case-control study

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sciencedirect.com/science/article/pii/S2352396425000131
Aug 2024
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Experimental and Computational Methods for Allelic Imbalance Analysis from Single-Nucleus RNA-seq Data

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1. scibot 23 Aug 2024
  
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  DOI: 10.1101/2024.08.13.607784
  
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biorxiv.org/content/10.1101/2024.08.13.607784v1
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CRISPR/Cas9-mediated deletion of a GA-repeat in human GPM6B leads to disruption of neural cell differentiation from NT2 cells

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1. scibot 02 Aug 2024
  
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  DOI: 10.1038/s41598-024-52675-3
  
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nature.com/articles/s41598-024-52675-3
Jul 2024
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Thermal facial image analyses reveal quantitative hallmarks of aging and metabolic diseases

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  DOI: 10.1016/j.cmet.2024.05.012
  
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cell.com/cell-metabolism/abstract/S1550-4131(24)00188-8
Mar 2024
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A TOPBP1 allele causing male infertility uncouples XY silencing dynamics from sex body formation

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  DOI: 10.7554/eLife.90887
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10942628/
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DNA methylation-environment interactions in the human genome

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ncbi.nlm.nih.gov/pmc/articles/PMC10942648/
Jan 2024
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IL32 downregulation lowers triglycerides and type I collagen in di-lineage human primary liver organoids

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  DOI: 10.1016/j.xcrm.2023.101352
  
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A new genomic framework to categorize pediatric acute myeloid leukemia

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  DOI: 10.1038/s41588-023-01640-3
  
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nature.com/articles/s41588-023-01640-3
Dec 2023
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Integrated multi-omics profiling to dissect the spatiotemporal evolution of metastatic hepatocellular carcinoma

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sciencedirect.com/science/article/pii/S1535610823004014
Sep 2023
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Myeloid leukemia vulnerabilities embedded in long noncoding RNA locus MYNRL15

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  DOI: 10.1016/j.isci.2023.107844
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10520325/
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Molecularly targetable cell types in mouse visual cortex have distinguishable prediction error responses

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  DOI: 10.1016/j.neuron.2023.08.015
  
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sciencedirect.com/science/article/pii/S0896627323006268
Aug 2023
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Diagnosis of childhood febrile illness using a multi-class blood RNA molecular signature

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  DOI: 10.1016/j.medj.2023.06.007
  
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sciencedirect.com/science/article/pii/S2666634023001940
Jun 2023
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The maturation and aging trajectory of Marchantia polymorpha at single-cell resolution

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  DOI: 10.1016/j.devcel.2023.05.014
  
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sciencedirect.com/science/article/pii/S1534580723002472
May 2023
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Synthetic miR-21 decoy circularized by tRNA splicing mechanism inhibited tumorigenesis in glioblastoma in vitro and in vivo models

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  DOI: 10.1016/j.omtn.2023.04.001
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10173299/
Nov 2022
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Tip60-mediated H2A.Z acetylation promotes neuronal fate specification and bivalent gene activation

1
1. scibot 24 Nov 2022
  
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  DOI: 10.1016/j.molcel.2022.11.002
  
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sciencedirect.com/science/article/abs/pii/S1097276522010644
Mar 2022
elifesciences.org elifesciences.org

Novel insights from a multiomics dissection of the Hayflick limit

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1. scibot 23 Mar 2022
  
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  DOI: 10.7554/eLife.70283
  
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elifesciences.org/articles/70283
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Identification of autosomal cis expression quantitative trait methylation (cis eQTMs) in children’s blood

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  DOI: 10.7554/eLife.65310
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8933004/
52.53.155.43 52.53.155.43

elife-65310-html.html

1
1. scibot 22 Mar 2022
  
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  SCR_012836
  
  DOI: 10.7554/elife.65310
  
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52.53.155.43/066c0f5eb8b001843d70b9973feb39d9b399662b/elife-65310-html.html
Oct 2021
www.sciencedirect.com www.sciencedirect.com

Establishment of a prognostic model of ten transcription factors in gastric cancer

1
1. scibot 26 Oct 2021
  
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  RRID:SCR_012836
  
  DOI: 10.1016/j.ygeno.2021.10.009
  
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sciencedirect.com/science/article/pii/S0888754321003736
Sep 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Leveraging the Mendelian disorders of the epigenetic machinery to systematically map functional epigenetic variation

1
1. scibot 22 Sep 2021
  
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  RRID:SCR_012836
  
  DOI: 10.7554/eLife.65884
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8443249/
Aug 2021
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Optimized CRISPR-mediated gene knockin reveals FOXP3-independent maintenance of human Treg identity

1
1. scibot 15 Aug 2021
  
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  SCR_012836
  
  DOI: 10.1016/j.celrep.2021.109494
  
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sciencedirect.com/science/article/pii/S2211124721009219
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Untitled document

1
1. scibot 09 Aug 2021
  
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  RRID:SCR_012836
  
  DOI: 10.1016/j.stem.2018.11.016
  
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sciencedirect.com/science/article/pii/S1934590918305526
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Untitled document

1
1. scibot 01 Aug 2021
  
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  RRID:SCR_012836
  
  DOI: 10.1016/j.cell.2018.11.014
  
  Resource: sva package (RRID:SCR_012836)
  
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sciencedirect.com/science/article/pii/S009286741831506X
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease

1
1. scibot 01 Aug 2021
  
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  RRID:SCR_012836
  
  DOI: 10.1016/j.cell.2018.08.067
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6176871/
Jan 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The leukocyte non-coding RNA landscape in critically ill patients with sepsis

1
1. scibot 06 Jan 2021
  
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  RRID:SCR_012836
  
  DOI: 10.7554/eLife.58597
  
  Resource: sva package (RRID:SCR_012836)
  
  Curator: @evieth
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7775110/
Oct 2020
pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov

Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes

1
1. scibot 16 Oct 2020
  
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  RRID:SCR_012836
  
  DOI: 10.1186/s13073-020-00785-8
  
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  Curator: @Naa003
  
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pubmed.ncbi.nlm.nih.gov/33054850/
Sep 2020
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Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease

1
1. scibot 07 Sep 2020
  
  in Public
  
  RRID:SCR_012836
  
  DOI: 10.1016/j.cell.2018.08.067
  
  Resource: sva package (RRID:SCR_012836)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6176871/
Jan 2020
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Untitled document

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_012836
  
  DOI: 10.1016/j.celrep.2019.01.041
  
  Resource: sva package (RRID:SCR_012836)
  
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sciencedirect.com/science/article/pii/S2211124719300592
Nov 2018
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Untitled document

1
1. scibot 05 Nov 2018
  
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  RRID:SCR_012836
  
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  (sva package, RRID:SCR_012836)
  
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sciencedirect.com/science/article/pii/S0092867418311681
Nov 2017
elifesciences.org elifesciences.org

Neuropathological and transcriptomic characteristics of the aged brain

1
1. tgilhou 13 Nov 2017
  
  in Public
  
  surrogate variable analysis (SVA)
  
  RRID:SCR_012836
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elifesciences.org/articles/31126
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Blood transcriptome based biomarkers for human circadian phase

1
1. scibot 08 Nov 2017
  
  in Public
  
  SCR_012836
  
  Curator: @chewbeccax
  
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  (sva package, RRID:SCR_012836)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5318160/