Hypothesis

24 Matching Annotations

Jul 2025
52.53.155.43 52.53.155.43

bilinovich-et-al-2025-methyl-cpg-binding-domain-as-a-protein-interaction-partner-in-promoter-regulation-and-html.html

1
1. scibot 29 Jul 2025
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.6084/m9.figshare.29361725.v1
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
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52.53.155.43/71efcdc483a88b8314a69385c8ba7fc2816578e0/bilinovich-et-al-2025-methyl-cpg-binding-domain-as-a-protein-interaction-partner-in-promoter-regulation-and-html.html
Jan 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Increased local DNA methylation disorder in AMLs with DNMT3A-destabilizing variants and its clinical implication

1
1. scibot 15 Jan 2025
  
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  RRID:SCR_015482
  
  DOI: 10.1038/s41467-024-55691-z
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11724044/
Feb 2024
52.53.155.43 52.53.155.43

can-23-1129-html.html

1
1. scibot 23 Feb 2024
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.1158/0008-5472.can-23-1129
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_015482
  
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  RRID:SCR_015482
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52.53.155.43/f18faff86a38ad159824c95dcf032e1a8bb0e968/133-html.html
Jan 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

BRCA1 and ELK-1 regulate neural progenitor cell fate in the optic tectum in response to visual experience in Xenopus laevis tadpoles

1
1. scibot 24 Jan 2024
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.1073/pnas.2316542121
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_015482
  
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  RRID:SCR_015482
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scibot

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ncbi.nlm.nih.gov/pmc/articles/PMC10801852/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Leveraging tissue-specific enhancer-target gene regulatory networks identifies enhancer somatic mutations that functionally impact lung cancer

1
1. scibot 05 Jan 2024
  
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  RRID:SCR_015482
  
  DOI: 10.1158/0008-5472.CAN-23-1129
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10758689/
Dec 2023
52.53.155.43 52.53.155.43

can-23-1129-html.html

1
1. scibot 01 Dec 2023
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.1158/0008-5472.can-23-1129
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
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52.53.155.43/f18faff86a38ad159824c95dcf032e1a8bb0e968/133-html.html
Nov 2023
www.sciencedirect.com www.sciencedirect.com

Tissue-specific and tissue-agnostic effects of genome sequence variation modulating blood pressure

1
1. scibot 03 Nov 2023
  
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  RRID:SCR_015482
  
  DOI: 10.1016/j.celrep.2023.113351
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_015482
  
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sciencedirect.com/science/article/pii/S2211124723013633
Sep 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Myeloid leukemia vulnerabilities embedded in long noncoding RNA locus MYNRL15

2
1. scibot 29 Sep 2023
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.1016/j.isci.2023.107844
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_015482
  
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  RRID:SCR_015482
2. scibot 29 Sep 2023
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.1016/j.isci.2023.107844
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_015482
  
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  RRID:SCR_015482
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ncbi.nlm.nih.gov/pmc/articles/PMC10520325/
Jun 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

A platform for efficient establishment and drug-response profiling of high-grade serous ovarian cancer organoids

1
1. scibot 22 Jun 2023
  
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  RRID:SCR_015482
  
  DOI: 10.1016/j.devcel.2023.04.012
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_015482
  
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  RRID:SCR_015482
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ncbi.nlm.nih.gov/pmc/articles/PMC10281085/
May 2023
www.nature.com www.nature.com

Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response

1
1. scibot 13 May 2023
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.1038/s41467-023-38271-5
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_015482
  
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  RRID:SCR_015482
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URL

nature.com/articles/s41467-023-38271-5
Nov 2022
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

FOXR2 is an epigenetically regulated pan-cancer oncogene that activates ETS transcriptional circuits

1
1. scibot 02 Nov 2022
  
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  RRID:SCR_015482
  
  DOI: 10.1158/0008-5472.CAN-22-0671
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_015482
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9437574/
Sep 2022
aacrjournals.org aacrjournals.org

PU.1-dependent enhancer inhibition separates Tet2-deficient hematopoiesis from malignant transformation

1
1. scibot 30 Sep 2022
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.1158/2643-3230.BCD-21-0226
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_015482
  
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URL

aacrjournals.org/bloodcancerdiscov/article/3/5/444/708355/PU-1-Dependent-Enhancer-Inhibition-Separates-Tet2
Apr 2022
www.sciencedirect.com www.sciencedirect.com

An adult-stage transcriptional program for survival of serotonergic connectivity

1
1. scibot 21 Apr 2022
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.1016/j.celrep.2022.110711
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_015482
  
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URL

sciencedirect.com/science/article/pii/S2211124722004727
Nov 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

E proteins orchestrate dynamic transcriptional cascades implicated in the suppression of the differentiation of group 2 innate lymphoid cells

1
1. scibot 05 Nov 2021
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.1074/jbc.RA120.013806
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_015482
  
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  RRID:SCR_015482
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URL

ncbi.nlm.nih.gov/pmc/articles/PMC7606671/
Oct 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Effects of sheared chromatin length on ChIP-seq quality and sensitivity

1
1. scibot 11 Oct 2021
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.1093/g3journal/jkab101
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_015482
  
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  RRID:SCR_015482
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URL

ncbi.nlm.nih.gov/pmc/articles/PMC8495733/
Jul 2021
www.nature.com www.nature.com

Combinatorial targeting of MTHFD2 and PAICS in purine synthesis as a novel therapeutic strategy

1
1. scibot 31 Jul 2021
  
  in Public
  
  ENCODE
  
  DOI: 10.1038/s41419-019-2033-z
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_015482
  
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  RRID:SCR_015482 RRIDCUR:Missing
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RRIDCUR:Missing

RRID:SCR_015482

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scibot

URL

nature.com/articles/s41419-019-2033-z
www.sciencedirect.com www.sciencedirect.com

LRH1-driven transcription factor circuitry for hepatocyte identity: Super-enhancer cistromic analysis

1
1. scibot 28 Jul 2021
  
  in Public
  
  RRID: SCR_015482
  
  DOI: 10.1016/j.ebiom.2018.12.056
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_015482
  
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  RRID:SCR_015482 RRIDCUR:Unrecognized
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RRIDCUR:Unrecognized

RRID:SCR_015482

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scibot

URL

sciencedirect.com/science/article/pii/S2352396418306339
Apr 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Identification of human glucocorticoid response markers using integrated multi-omic analysis from a randomized crossover trial

1
1. scibot 09 Apr 2021
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.7554/eLife.62236
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_015482
  
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  RRIDCUR:Validated RRID:SCR_015482
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RRIDCUR:Validated

RRID:SCR_015482

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scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC8024021/
Mar 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Zinc Finger Protein CTCF Regulates Extracellular Matrix (ECM)-Related Gene Expression Associated With the Wnt Signaling Pathway in Gastric Cancer

1
1. scibot 04 Mar 2021
  
  in Public
  
  SCR_015482
  
  DOI: 10.3389/fonc.2020.625633
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_015482
  
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  RRIDCUR:Validated RRID:SCR_015482
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RRIDCUR:Validated

RRID:SCR_015482

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scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC7921701/
Sep 2020
www.sciencedirect.com www.sciencedirect.com

Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types

1
1. scibot 17 Sep 2020
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.1016/j.celrep.2020.108029
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_015482
  
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  RRIDCUR:Validated RRID:SCR_015482
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RRIDCUR:Validated

RRID:SCR_015482

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scibot

URL

sciencedirect.com/science/article/pii/S2211124720310147
Jan 2020
elifesciences.org elifesciences.org

Lmx1b is required at multiple stages to build expansive serotonergic axon architectures

1
1. scibot 13 Jan 2020
  
  in Public
  
  RRID:SCR_015482
  
  DOI: 10.7554/eLife.48788
  
  Resource: Encode (RRID:SCR_015482)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_015482
  
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  RRID:SCR_015482 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_015482

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scibot

URL

elifesciences.org/articles/48788
Nov 2018
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity

1
1. scibot 05 Nov 2018
  
  in Public
  
  RRID:SCR_015482
  
  Curator: @evieth
  
  Resource used:
  
  (Encode, RRID:SCR_015482)
  
  SciCrunch record: RRID:SCR_015482
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:SCR_015482 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_015482

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scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC5906096/
Nov 2017
elifesciences.org elifesciences.org

Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells

1
1. scibot 08 Nov 2017
  
  in Public
  
  Encode
  
  Curator: @chewbeccax
  
  Resource used:
  
  (Encode, RRID:SCR_015482)
  
  SciCrunch record: RRID:SCR_015482
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:SCR_015482 RRIDCUR:Missing
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RRIDCUR:Missing

RRID:SCR_015482

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scibot

URL

elifesciences.org/articles/23203