104 Matching Annotations
  1. Sep 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Whole-genome sequencing of the invasive golden apple snail Pomacea canaliculata from Asia reveals rapid expansion and adaptive evolution
    1
    1. scibot 26 Sep 2024
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giae064

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    ncbi.nlm.nih.gov/pmc/articles/PMC11417965/
  3. Jul 2024
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Innovative approach for high-throughput exploiting sex-specific markers in Japanese parrotfish Oplegnathus fasciatus
    1
    1. scibot 23 Jul 2024
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giae045

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    ncbi.nlm.nih.gov/pmc/articles/PMC11258905/
  5. May 2024
  6. www.sciencedirect.com www.sciencedirect.com
    Reciprocal conversion between annual and polycarpic perennial flowering behavior in the Brassicaceae
    3
    1. scibot 30 May 2024
      RRID:SCR_015880

      DOI: 10.1016/j.cell.2024.04.047

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    2. scibot 30 May 2024
      RRID:SCR_015880

      DOI: 10.1016/j.cell.2024.04.047

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    3. scibot 30 May 2024
      RRID:SCR_015880

      DOI: 10.1016/j.cell.2024.04.047

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    sciencedirect.com/science/article/pii/S0092867424004732
  7. Feb 2024
  8. www.sciencedirect.com www.sciencedirect.com
    CAG repeat expansions create splicing acceptor sites and produce aberrant repeat-containing RNAs
    1
    1. scibot 02 Feb 2024
      RRID:SCR_015880

      DOI: 10.1016/j.molcel.2024.01.006

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    sciencedirect.com/science/article/pii/S1097276524000078
  9. Dec 2023
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Stenotrophomonas goyi sp. nov., a novel bacterium associated with the alga Chlamydomonas reinhardtii
    1
    1. scibot 01 Dec 2023
      RRID:SCR_015880

      DOI: 10.12688/f1000research.134978.2

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    ncbi.nlm.nih.gov/pmc/articles/PMC10682605/
  11. Nov 2023
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations
    1
    1. scibot 30 Nov 2023
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giad100

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    ncbi.nlm.nih.gov/pmc/articles/PMC10673639/
  13. Oct 2023
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator
    1
    1. scibot 28 Oct 2023
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giad090

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    ncbi.nlm.nih.gov/pmc/articles/PMC10600911/
  15. www.cell.com www.cell.com
    An integrated systems-biology approach reveals differences in formate metabolism in the genus Methanothermobacter
    1
    1. scibot 13 Oct 2023
      RRID:SCR_015880

      DOI: 10.1016/j.isci.2023.108016

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    cell.com/iscience/abstract/S2589-0042(23)02093-X
  16. Sep 2023
  17. www.sciencedirect.com www.sciencedirect.com
    Distinct pathways of adaptive evolution in Cryptococcus neoformans reveal a mutation in adenylyl cyclase with trade-offs for pathogenicity
    1
    1. scibot 16 Sep 2023
      SCR_015880

      DOI: 10.1016/j.cub.2023.08.054

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    sciencedirect.com/science/article/pii/S096098222301134X
  18. Aug 2023
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids
    1
    1. scibot 29 Aug 2023
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giad064

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    ncbi.nlm.nih.gov/pmc/articles/PMC10460159/
  20. Jul 2023
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic analyses provide insights into the evolution and salinity adaptation of halophyte Tamarix chinensis
    1
    1. scibot 29 Jul 2023
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giad053

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    ncbi.nlm.nih.gov/pmc/articles/PMC10370455/
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
    1
    1. scibot 25 Jul 2023
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giad051

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    ncbi.nlm.nih.gov/pmc/articles/PMC10360393/
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology
    1
    1. scibot 22 Jul 2023
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giad018

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    ncbi.nlm.nih.gov/pmc/articles/PMC10353722/
  24. Apr 2023
  25. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
    1
    1. scibot 11 Apr 2023
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giad022

      Resource: Canu (RRID:SCR_015880)

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
  26. Mar 2023
  27. academic.oup.com academic.oup.com
    Resequencing of a Pekin duck breeding population provides insights into the genomic response to short-term artificial selection
    2
    1. scibot 30 Mar 2023
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giad016

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    2. scibot 30 Mar 2023
      RRID:SCR_015

      DOI: 10.1093/gigascience/giad016

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad016/7086661
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the roundjaw bonefish (Albula glossodonta), a vulnerable circumtropical sportfish
    1
    1. scibot 29 Mar 2023
      RRID:SCR_015880

      DOI: 10.46471/gigabyte.44

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    ncbi.nlm.nih.gov/pmc/articles/PMC10038134/
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research
    1
    1. scibot 22 Mar 2023
      RRID:SCR_015880

      DOI: 10.46471/gigabyte.71

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    ncbi.nlm.nih.gov/pmc/articles/PMC10027117/
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SMARTdenovo: a de novo assembler using long noisy reads
    1
    1. scibot 02 Mar 2023
      RRID: SCR_015880

      DOI: 10.46471/gigabyte.15

      Resource: Canu (RRID:SCR_015880)

      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC9632051/
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improvements in the sequencing and assembly of plant genomes
    1
    1. scibot 02 Mar 2023
      RRID:SCR_015880

      DOI: 10.46471/gigabyte.24

      Resource: Canu (RRID:SCR_015880)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9631998/
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level assembly of the common vetch (Vicia sativa) reference genome
    1
    1. scibot 02 Mar 2023
      RRID:SCR_015880

      DOI: 10.46471/gigabyte.38

      Resource: Canu (RRID:SCR_015880)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650280/
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality draft genome for Melaleuca alternifolia (tea tree): a new platform for evolutionary genomics of myrtaceous terpene-rich species
    1
    1. scibot 02 Mar 2023
      RRID:SCR_015880

      DOI: 10.46471/gigabyte.28

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650293/
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies
    1
    1. scibot 02 Mar 2023
      RRID:SCR_015880

      DOI: 10.46471/gigabyte.27

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650304/
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The genome of a giant (trevally): Caranx ignobilis
    1
    1. scibot 02 Mar 2023
      RRID:SCR_015880

      DOI: 10.46471/gigabyte.67

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    ncbi.nlm.nih.gov/pmc/articles/PMC9694125/
  36. Feb 2023
  37. www.biorxiv.org www.biorxiv.org
    The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology
    1
    1. scibot 23 Feb 2023
      RRID:SCR_015880

      DOI: 10.1101/2023.01.26.525801

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    biorxiv.org/content/10.1101/2023.01.26.525801v1
  38. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds
    1
    1. scibot 08 Feb 2023
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giad003

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad003/7025323
  39. www.mdpi.com www.mdpi.com
    Genome Assembly and Comparative Analysis of the Egg Parasitoid Wasp Trichogramma dendrolimi Shed Light on the Composition and Evolution of Olfactory Receptors and Venoms
    1
    1. scibot 04 Feb 2023
      RRID:SCR_015880

      DOI: 10.3390/insects14020144

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    mdpi.com/2075-4450/14/2/144
  40. Jan 2023
  41. www.nature.com www.nature.com
    A chromosome-level genome assembly of Plantago ovata
    1
    1. scibot 31 Jan 2023
      RRID:SCR_015880

      DOI: 10.1038/s41598-022-25078-5

      Resource: Canu (RRID:SCR_015880)

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    nature.com/articles/s41598-022-25078-5
  42. Dec 2022
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation
    1
    1. scibot 30 Dec 2022
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giac112

      Resource: Canu (RRID:SCR_015880)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9795480/
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization
    1
    1. scibot 16 Dec 2022
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giac120

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    ncbi.nlm.nih.gov/pmc/articles/PMC9730501/
  45. Nov 2022
  46. academic.oup.com academic.oup.com
    High-quality genome assembles from key Hawaiian coral species
    1
    1. scibot 12 Nov 2022
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giac098

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac098/6815755
  47. Oct 2022
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population
    1
    1. scibot 26 Oct 2022
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giac090

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    ncbi.nlm.nih.gov/pmc/articles/PMC9553416/
  49. Jul 2022
  50. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome of the booklouse, Liposcelis brunnea, provides insight into louse evolution and environmental stress adaptation
    1
    1. scibot 27 Jul 2022
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giac062

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    ncbi.nlm.nih.gov/pmc/articles/PMC9295366/
  51. Jun 2022
  52. www.nature.com www.nature.com
    The first long-read nuclear genome assembly of Oryza australiensis, a wild rice from northern Australia
    1
    1. scibot 28 Jun 2022
      RRID:SCR_015880

      DOI: 10.1038/s41598-022-14893-5

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    nature.com/articles/s41598-022-14893-5
  53. academic.oup.com academic.oup.com
    A chromosome-level genome assembly of Artocarpus nanchuanensis (Moraceae), an extremely endangered fruit tree
    1
    1. scibot 17 Jun 2022
      RRID:SCR_015880

      DOI: 10.1093/gigascience/giac042

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac042/6608506
  54. May 2022
  55. f1000research.com f1000research.com
    F1000Research Article: The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
    1
    1. scibot 21 May 2022
      RRID:SCR_015880

      DOI: 10.12688/f1000research.110194.1

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    f1000research.com/articles/11-530
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Australian dingo is an early offshoot of modern breed dogs
    1
    1. scibot 11 May 2022
      RRID:SCR_015880

      DOI: 10.1126/sciadv.abm5944

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    ncbi.nlm.nih.gov/pmc/articles/PMC9032958/
  57. Apr 2022
  58. www.science.org www.science.org
    The Australian dingo is an early offshoot of modern breed dogs
    1
    1. scibot 30 Apr 2022
      RRID:SCR_015880

      DOI: 10.1126/sciadv.abm5944

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    science.org/doi/full/10.1126/sciadv.abm5944
  59. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome of the human blood fluke Schistosoma japonicum identifies the genomic basis of host-switching
    1
    1. scibot 07 Apr 2022
      RRID:SCR_015880

      DOI: 10.1016/j.celrep.2022.110638

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    sciencedirect.com/science/article/pii/S2211124722003904
  60. Mar 2022
  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods
    1
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  62. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes
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  63. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    High-quality assembly of the reference genome for scarlet sage, Salvia splendens, an economically important ornamental plant
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    ncbi.nlm.nih.gov/labs/pmc/articles/PMC6030905/
  64. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Fully resolved assembly of Cryptosporidium parvum
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  65. Feb 2022
  66. academic.oup.com academic.oup.com
    An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome
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  67. Nov 2021
  68. academic.oup.com academic.oup.com
    De novo screening of disease-resistant genes from the chromosome-level genome of rare minnow using CRISPR-cas9 random mutation
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  69. Oct 2021
  70. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of Channa argus and Channa maculata and comparative analysis of their temperature adaptability
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  71. Sep 2021
  72. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Uniparental nuclear inheritance following bisexual mating in fungi
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  73. Aug 2021
  74. academic.oup.com academic.oup.com
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  78. Jul 2021
  79. onlinelibrary.wiley.com onlinelibrary.wiley.com
    De Novo Assembly of a Chromosome‐Level Reference Genome of Red Spotted Grouper (Epinephelus akaara) Using Nanopore Sequencing and Hi‐C
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  80. Apr 2021
  81. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of the hard-shelled mussel Mytilus coruscus, a widely distributed species from the temperate areas of East Asia
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    A chromosome-level reference genome of the hazelnut, Corylus heterophylla Fisch
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    A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas
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  84. Mar 2021
  85. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
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    Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis)
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    Accurate Haplotype-Resolved Assembly Reveals The Origin Of Structural Variants For Human Trios
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  88. Feb 2021
  89. academic.oup.com academic.oup.com
    The draft genome sequence of the grove snail Cepaea nemoralis
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  90. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing
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  91. academic.oup.com academic.oup.com
    Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines
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  92. Jan 2021
  93. academic.oup.com academic.oup.com
    Comparison of long-read methods for sequencing and assembly of a plant genome
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  94. Dec 2020
  95. academic.oup.com academic.oup.com
    Genome sequencing of deep-sea hydrothermal vent snails reveals adaptions to extreme environments
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  96. academic.oup.com academic.oup.com
    High-quality chromosome-level genome assembly and full-length transcriptome analysis of the pharaoh ant Monomorium pharaonis
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    Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore
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  98. Sep 2020
  99. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
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      DOI: 10.1093/gigascience/giaa099

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  100. academic.oup.com academic.oup.com
    Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis
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      DOI: 10.1093/gigascience/giaa006

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  101. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Draft Genome of the Asian Buffalo Leech Hirudinaria manillensis
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      DOI: 10.3389/fgene.2019.01321

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  102. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
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      DOI: 10.1093/gigascience/giaa088

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    Generation of a chromosome-scale genome assembly of the insect-repellent terpenoid-producing Lamiaceae species, Callicarpa americana
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    TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads
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      DOI: 10.1093/gigascience/giaa094

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    Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C
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    De novo assembly of the cattle reference genome with single-molecule sequencing
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    Chromosome-level genome assembly and annotation of the loquat ( Eriobotrya japonica ) genome
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  108. Jan 2020
  109. www.sciencedirect.com www.sciencedirect.com
    A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana
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  110. academic.oup.com academic.oup.com
    The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
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    A chromosome-scale assembly of the major African malaria vector Anopheles funestus
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    Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
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      DOI: 10.1093/gigascience/giz104

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    De novo genome assembly of the endangered Acer yangbiense , a plant species with extremely small populations endemic to Yunnan Province, China
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    Chromosomal-level assembly of the blood clam, Scapharca ( Anadara ) broughtonii , using long sequence reads and Hi-C
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    A chromosome-level draft genome of the grain aphid Sitobion miscanthi
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  116. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    A chromosomal-level genome assembly for the giant African snail Achatina fulica
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    Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data
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    A chromosomal-scale genome assembly of Tectona grandis reveals the importance of tandem gene duplication and enables discovery of genes in natural product biosynthetic pathways
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  126. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping
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    Draft Genome Sequence of Chromatium okenii Isolated from the Stratified Alpine Lake Cadagno
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  128. Nov 2018
  129. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    Extremely Divergent Haplotypes in Two Toxin Gene Complexes Encode Alternative Venom Types within Rattlesnake Species
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    Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building
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    Efficient generation of complete sequences of MDR-encoding plasmids by rapid assembly of MinION barcoding sequencing data
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  137. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation
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