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109 Matching Annotations

Aug 2025
www.science.org www.science.org

The Australian dingo is an early offshoot of modern breed dogs

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1. scibot 14 Aug 2025
  
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  DOI: 10.1126/sciadv.abm5944
  
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science.org/doi/10.1126/sciadv.abm5944
Apr 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

The molecular basis of octocoral calcification revealed by genome and skeletal proteome analyses

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1. scibot 05 Apr 2025
  
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  DOI: 10.1093/gigascience/giaf031
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11959691/
Mar 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Long-read metagenomic sequencing negates inferred loss of cytosine methylation in Myxosporea (Cnidaria: Myxozoa)

1
1. scibot 15 Mar 2025
  
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  DOI: 10.1093/gigascience/giaf014
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11905887/
Feb 2025
www.sciencedirect.com www.sciencedirect.com

The endogenous antigen-specific CD8+ T cell repertoire is composed of unbiased and biased clonotypes with differential fate commitments

1
1. scibot 28 Feb 2025
  
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  DOI: 10.1016/j.immuni.2025.02.001
  
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sciencedirect.com/science/article/pii/S1074761325000688
Jan 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Diaci v3.0: chromosome-level assembly, de novo transcriptome, and manual annotation of Diaphorina citri, insect vector of Huanglongbing

1
1. scibot 18 Jan 2025
  
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  DOI: 10.1093/gigascience/giae109
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11659978/
Sep 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Whole-genome sequencing of the invasive golden apple snail Pomacea canaliculata from Asia reveals rapid expansion and adaptive evolution

1
1. scibot 26 Sep 2024
  
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  DOI: 10.1093/gigascience/giae064
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11417965/
Jul 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Innovative approach for high-throughput exploiting sex-specific markers in Japanese parrotfish Oplegnathus fasciatus

1
1. scibot 23 Jul 2024
  
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  DOI: 10.1093/gigascience/giae045
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11258905/
May 2024
www.sciencedirect.com www.sciencedirect.com

Reciprocal conversion between annual and polycarpic perennial flowering behavior in the Brassicaceae

3
1. scibot 30 May 2024
  
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  DOI: 10.1016/j.cell.2024.04.047
  
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2. scibot 30 May 2024
  
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  DOI: 10.1016/j.cell.2024.04.047
  
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3. scibot 30 May 2024
  
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  DOI: 10.1016/j.cell.2024.04.047
  
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sciencedirect.com/science/article/pii/S0092867424004732
Feb 2024
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CAG repeat expansions create splicing acceptor sites and produce aberrant repeat-containing RNAs

1
1. scibot 02 Feb 2024
  
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  DOI: 10.1016/j.molcel.2024.01.006
  
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sciencedirect.com/science/article/pii/S1097276524000078
Dec 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Stenotrophomonas goyi sp. nov., a novel bacterium associated with the alga Chlamydomonas reinhardtii

1
1. scibot 01 Dec 2023
  
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  DOI: 10.12688/f1000research.134978.2
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10682605/
Nov 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations

1
1. scibot 30 Nov 2023
  
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  DOI: 10.1093/gigascience/giad100
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10673639/
Oct 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator

1
1. scibot 28 Oct 2023
  
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  DOI: 10.1093/gigascience/giad090
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10600911/
www.cell.com www.cell.com

An integrated systems-biology approach reveals differences in formate metabolism in the genus Methanothermobacter

1
1. scibot 13 Oct 2023
  
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  DOI: 10.1016/j.isci.2023.108016
  
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cell.com/iscience/abstract/S2589-0042(23)02093-X
Sep 2023
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Distinct pathways of adaptive evolution in Cryptococcus neoformans reveal a mutation in adenylyl cyclase with trade-offs for pathogenicity

1
1. scibot 16 Sep 2023
  
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  DOI: 10.1016/j.cub.2023.08.054
  
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sciencedirect.com/science/article/pii/S096098222301134X
Aug 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids

1
1. scibot 29 Aug 2023
  
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  DOI: 10.1093/gigascience/giad064
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10460159/
Jul 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Genomic analyses provide insights into the evolution and salinity adaptation of halophyte Tamarix chinensis

1
1. scibot 29 Jul 2023
  
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  DOI: 10.1093/gigascience/giad053
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10370455/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

A new haplotype-resolved turkey genome to enable turkey genetics and genomics research

1
1. scibot 25 Jul 2023
  
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  DOI: 10.1093/gigascience/giad051
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10360393/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology

1
1. scibot 22 Jul 2023
  
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  DOI: 10.1093/gigascience/giad018
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10353722/
Apr 2023
academic.oup.com academic.oup.com

GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics

1
1. scibot 11 Apr 2023
  
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  DOI: 10.1093/gigascience/giad022
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
Mar 2023
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Resequencing of a Pekin duck breeding population provides insights into the genomic response to short-term artificial selection

2
1. scibot 30 Mar 2023
  
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  DOI: 10.1093/gigascience/giad016
  
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2. scibot 30 Mar 2023
  
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  RRID:SCR_015
  
  DOI: 10.1093/gigascience/giad016
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad016/7086661
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Genome assembly of the roundjaw bonefish (Albula glossodonta), a vulnerable circumtropical sportfish

1
1. scibot 29 Mar 2023
  
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  DOI: 10.46471/gigabyte.44
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10038134/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research

1
1. scibot 22 Mar 2023
  
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  DOI: 10.46471/gigabyte.71
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10027117/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

SMARTdenovo: a de novo assembler using long noisy reads

1
1. scibot 02 Mar 2023
  
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  DOI: 10.46471/gigabyte.15
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9632051/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Improvements in the sequencing and assembly of plant genomes

1
1. scibot 02 Mar 2023
  
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  DOI: 10.46471/gigabyte.24
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9631998/
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Chromosome-level assembly of the common vetch (Vicia sativa) reference genome

1
1. scibot 02 Mar 2023
  
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  DOI: 10.46471/gigabyte.38
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9650280/
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A high-quality draft genome for Melaleuca alternifolia (tea tree): a new platform for evolutionary genomics of myrtaceous terpene-rich species

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1. scibot 02 Mar 2023
  
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  DOI: 10.46471/gigabyte.28
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9650293/
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Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies

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1. scibot 02 Mar 2023
  
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  DOI: 10.46471/gigabyte.27
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9650304/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The genome of a giant (trevally): Caranx ignobilis

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1. scibot 02 Mar 2023
  
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  DOI: 10.46471/gigabyte.67
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9694125/
Feb 2023
www.biorxiv.org www.biorxiv.org

The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology

1
1. scibot 23 Feb 2023
  
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  DOI: 10.1101/2023.01.26.525801
  
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biorxiv.org/content/10.1101/2023.01.26.525801v1
academic.oup.com academic.oup.com

Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds

1
1. scibot 08 Feb 2023
  
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  DOI: 10.1093/gigascience/giad003
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad003/7025323
www.mdpi.com www.mdpi.com

Genome Assembly and Comparative Analysis of the Egg Parasitoid Wasp Trichogramma dendrolimi Shed Light on the Composition and Evolution of Olfactory Receptors and Venoms

1
1. scibot 04 Feb 2023
  
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  DOI: 10.3390/insects14020144
  
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mdpi.com/2075-4450/14/2/144
Jan 2023
www.nature.com www.nature.com

A chromosome-level genome assembly of Plantago ovata

1
1. scibot 31 Jan 2023
  
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  DOI: 10.1038/s41598-022-25078-5
  
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nature.com/articles/s41598-022-25078-5
Dec 2022
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation

1
1. scibot 30 Dec 2022
  
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  RRID:SCR_015880
  
  DOI: 10.1093/gigascience/giac112
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9795480/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization

1
1. scibot 16 Dec 2022
  
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  RRID:SCR_015880
  
  DOI: 10.1093/gigascience/giac120
  
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High-quality genome assembles from key Hawaiian coral species

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Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population

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A chromosome-level genome of the booklouse, Liposcelis brunnea, provides insight into louse evolution and environmental stress adaptation

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The first long-read nuclear genome assembly of Oryza australiensis, a wild rice from northern Australia

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A chromosome-level genome assembly of Artocarpus nanchuanensis (Moraceae), an extremely endangered fruit tree

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F1000Research Article: The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.

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The Australian dingo is an early offshoot of modern breed dogs

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The Australian dingo is an early offshoot of modern breed dogs

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A chromosome-level genome of the human blood fluke Schistosoma japonicum identifies the genomic basis of host-switching

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KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods

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Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes

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High-quality assembly of the reference genome for scarlet sage, Salvia splendens, an economically important ornamental plant

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Fully resolved assembly of Cryptosporidium parvum

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An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome

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De novo screening of disease-resistant genes from the chromosome-level genome of rare minnow using CRISPR-cas9 random mutation

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Chromosome-level genome assemblies of Channa argus and Channa maculata and comparative analysis of their temperature adaptability

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Uniparental nuclear inheritance following bisexual mating in fungi

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Untitled document

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Untitled document

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De Novo Assembly of a Chromosome‐Level Reference Genome of Red Spotted Grouper (Epinephelus akaara) Using Nanopore Sequencing and Hi‐C

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onlinelibrary.wiley.com/doi/10.1111/1755-0998.13064
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Chromosome-level genome assembly of the hard-shelled mussel Mytilus coruscus, a widely distributed species from the temperate areas of East Asia

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A chromosome-level reference genome of the hazelnut, Corylus heterophylla Fisch

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A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas

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Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis

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Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis)

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Accurate Haplotype-Resolved Assembly Reveals The Origin Of Structural Variants For Human Trios

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academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btab068/6128392
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The draft genome sequence of the grove snail Cepaea nemoralis

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Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing

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Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

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academic.oup.com/gigascience/article/9/2/giaa007/5728470
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Comparison of long-read methods for sequencing and assembly of a plant genome

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Genome sequencing of deep-sea hydrothermal vent snails reveals adaptions to extreme environments

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High-quality chromosome-level genome assembly and full-length transcriptome analysis of the pharaoh ant Monomorium pharaonis

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Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore

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Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods

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Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis

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Draft Genome of the Asian Buffalo Leech Hirudinaria manillensis

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A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning

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Generation of a chromosome-scale genome assembly of the insect-repellent terpenoid-producing Lamiaceae species, Callicarpa americana

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TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads

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Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C

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De novo assembly of the cattle reference genome with single-molecule sequencing

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Chromosome-level genome assembly and annotation of the loquat ( Eriobotrya japonica ) genome

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A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana

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The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies

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A chromosome-scale assembly of the major African malaria vector Anopheles funestus

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Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli

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De novo genome assembly of the endangered Acer yangbiense , a plant species with extremely small populations endemic to Yunnan Province, China

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Chromosomal-level assembly of the blood clam, Scapharca ( Anadara ) broughtonii , using long sequence reads and Hi-C

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A chromosome-level draft genome of the grain aphid Sitobion miscanthi

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A chromosome-scale genome assembly of cucumber (Cucumis sativus L.)

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A chromosomal-level genome assembly for the giant African snail Achatina fulica

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Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data

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De novo genome assembly of the white-spotted flower chafer (Protaetia brevitarsis)

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A chromosomal-scale genome assembly of Tectona grandis reveals the importance of tandem gene duplication and enables discovery of genes in natural product biosynthetic pathways

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Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping

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Draft Genome Sequence of Chromatium okenii Isolated from the Stratified Alpine Lake Cadagno

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Extremely Divergent Haplotypes in Two Toxin Gene Complexes Encode Alternative Venom Types within Rattlesnake Species

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Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

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Efficient generation of complete sequences of MDR-encoding plasmids by rapid assembly of MinION barcoding sequencing data

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Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation

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1. scibot 05 Nov 2018
  
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