101 Matching Annotations
  1. Dec 2024
  2. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A consensus definition for deep layer 6 excitatory neurons in mouse neocortex
    1
    1. scibot 13 Dec 2024
      RRID:SCR_016152

      DOI: 10.1101/2024.11.04.621933

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    pmc.ncbi.nlm.nih.gov/articles/PMC11580952/
  3. Sep 2024
  4. www.sciencedirect.com www.sciencedirect.com
    Areal specializations in the morpho-electric and transcriptomic properties of primate layer 5 extratelencephalic projection neurons
    1
    1. scibot 17 Sep 2024
      RRID:SCR_016152

      DOI: 10.1016/j.celrep.2024.114718

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    sciencedirect.com/science/article/pii/S2211124724010696
  5. Aug 2024
  6. www.nature.com www.nature.com
    Isoform cell-type specificity in the mouse primary motor cortex
    1
    1. scibot 02 Aug 2024
      http://data.nemoarchive.org

      DOI: 10.1038/s41586-021-03969-3

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    nature.com/articles/s41586-021-03969-3
  7. elifesciences.org elifesciences.org
    Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans
    1
    1. scibot 02 Aug 2024
      https://assets.nemoarchive.org

      DOI: 10.7554/eLife.64875

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    elifesciences.org/articles/64875
  8. www.jneurosci.org www.jneurosci.org
    Cell type-specific oxidative stress genomic signatures in the globus pallidus of dopamine depleted mice
    1
    1. scibot 02 Aug 2024
      NEMO (https://portal.nemoarchive.org,

      DOI: 10.1523/JNEUROSCI.1634-20.2020

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    jneurosci.org/content/40/50/9772
  9. journals.biologists.com journals.biologists.com
    scTOP: physics-inspired order parameters for cellular identification and visualization
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    1. scibot 02 Aug 2024
      https://assets.nemoarchive.org/dat-jb2f34y)

      DOI: 10.1242/dev.201873

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    journals.biologists.com/dev/article/150/21/dev201873/334525/scTOP-physics-inspired-order-parameters-for
  10. academic.oup.com academic.oup.com
    Genetic Insights of Schizophrenia via Single Cell RNA-Sequencing Analyses
    1
    1. scibot 02 Aug 2024
      https://data.nemoarchive.org/biccn/grant/u01_devhu/kriegstein/transcriptome/scell/10x_v2/human/processed/counts/.

      DOI: 10.1093/schbul/sbad002

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    academic.oup.com/schizophreniabulletin/article/49/4/914/7048714
  11. www.frontiersin.org www.frontiersin.org
    Transcriptional networks of transient cell states during human prefrontal cortex development
    1
    1. scibot 02 Aug 2024
      https://data.nemoarchive.org/biccn/grant/u01_devhu/kriegstein/transcriptome/scell/10x_v2/human/processed/counts/.

      DOI: 10.3389/fnmol.2023.1126438

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    frontiersin.org/articles/10.3389/fnmol.2023.1126438
  12. May 2024
  13. www.biorxiv.org www.biorxiv.org
    Concerted neuron-astrocyte gene expression declines in aging and schizophrenia
    1
    1. scibot 03 May 2024
      RRID:SCR_016152

      DOI: 10.1101/2024.01.07.574148

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    biorxiv.org/content/10.1101/2024.01.07.574148v1
  14. Apr 2024
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    scButterfly: a versatile single-cell cross-modality translation method via dual-aligned variational autoencoders
    1
    1. scibot 10 Apr 2024
      RRID:SCR_016152

      DOI: 10.1038/s41467-024-47418-x

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    ncbi.nlm.nih.gov/pmc/articles/PMC10998864/
  16. Mar 2024
  17. www.nature.com www.nature.com
    Single-cell epigenomics reveals mechanisms of human cortical development
    1
    1. scibot 01 Mar 2024
      https://assets.nemoarchive.org

      DOI: 10.1038/s41586-021-03209-8

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    nature.com/articles/s41586-021-03209-8
  18. Feb 2024
  19. www.biorxiv.org www.biorxiv.org
    Cell type-specific enrichment of somatic aneuploidy in the mammalian brain
    1
    1. scibot 15 Feb 2024
      RRID:SCR_016152

      DOI: 10.1101/2023.12.18.572285

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    biorxiv.org/content/10.1101/2023.12.18.572285v1
  20. Jan 2024
  21. www.biorxiv.org www.biorxiv.org
    Cell type-specific enrichment of somatic aneuploidy in the mammalian brain
    1
    1. scibot 18 Jan 2024
      RRID:SCR_016152

      DOI: 10.1101/2023.12.18.572285

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    biorxiv.org/content/10.1101/2023.12.18.572285v1
  22. www.biorxiv.org www.biorxiv.org
    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
    1
    1. scibot 13 Jan 2024
      RRID:SCR_016152

      DOI: 10.1101/2022.11.06.515349

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    biorxiv.org/content/10.1101/2022.11.06.515349v1
  23. www.science.org www.science.org
    Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex
    1
    1. scibot 13 Jan 2024
      RRID:SCR_016152

      DOI: 10.1126/science.adf0805

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    science.org/doi/10.1126/science.adf0805
  24. www.science.org www.science.org
    Transcriptomic diversity of cell types across the adult human brain
    1
    1. scibot 13 Jan 2024
      RRID:SCR_016152

      DOI: 10.1126/science.add7046

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    science.org/doi/10.1126/science.add7046
  25. Dec 2023
  26. www.nature.com www.nature.com
    Single-cell analysis of chromatin accessibility in the adult mouse brain
    1
    1. scibot 14 Dec 2023
      RRID:SCR_016152

      DOI: 10.1038/s41586-023-06824-9

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    nature.com/articles/s41586-023-06824-9
  27. www.nature.com www.nature.com
    The molecular cytoarchitecture of the adult mouse brain
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    1. scibot 14 Dec 2023
      SCR_016152

      DOI: 10.1038/s41586-023-06818-7

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    nature.com/articles/s41586-023-06818-7
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer’s disease brains
    1
    1. scibot 09 Dec 2023
      Neuroscience Multi-omic Data Archive

      DOI: 10.1186/s13578-023-01120-5

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    ncbi.nlm.nih.gov/pmc/articles/PMC10546724/
  29. www.nature.com www.nature.com
    Molecular features driving cellular complexity of human brain evolution
    1
    1. scibot 09 Dec 2023
      nemoarchive

      DOI: 10.1038/s41586-023-06338-4

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    nature.com/articles/s41586-023-06338-4
  30. www.science.org www.science.org
    Molecular programs of regional specification and neural stem cell fate progression in macaque telencephalon
    1
    1. scibot 09 Dec 2023
      NEMO Archive

      DOI: 10.1126/science.adf3786

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    science.org/doi/10.1126/science.adf3786
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Droplet-based single-cell joint profiling of histone modifications and transcriptomes
    1
    1. scibot 09 Dec 2023
      RRID:SCR_016152

      DOI: 10.1038/s41594-023-01060-1

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    ncbi.nlm.nih.gov/pmc/articles/PMC10584685/
  32. www.science.org www.science.org
    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
    1
    1. scibot 09 Dec 2023
      RRID:SCR_016152

      DOI: 10.1126/science.adf6812

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    science.org/doi/10.1126/science.adf6812
  33. www.science.org www.science.org
    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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    1. scibot 09 Dec 2023
      RRID:SCR_016152

      DOI: 10.1126/sciadv.adh1914

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    science.org/doi/10.1126/sciadv.adh1914
  34. www.science.org www.science.org
    Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus
    1
    1. scibot 09 Dec 2023
      RRID:SCR_016152

      DOI: 10.1126/sciadv.adf6251

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    science.org/doi/10.1126/sciadv.adf6251
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology
    1
    1. scibot 09 Dec 2023
      RRID:SCR_016152

      DOI: 10.1007/s00018-022-04378-z

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    ncbi.nlm.nih.gov/pmc/articles/PMC9164190/
  36. www.biorxiv.org www.biorxiv.org
    A marmoset brain cell census reveals influence of developmental origin and functional class on neuronal identity
    1
    1. scibot 09 Dec 2023
      RRID:SCR_016152

      DOI: 10.1101/2022.10.18.512442

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    biorxiv.org/content/10.1101/2022.10.18.512442v2
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
    1
    1. scibot 08 Dec 2023
      https://nemoarchive.org/

      DOI: 10.1101/2023.03.06.531121

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    ncbi.nlm.nih.gov/pmc/articles/PMC10081189/
  38. www.nature.com www.nature.com
    Identification of brain cell types underlying genetic association with word reading and correlated traits
    1
    1. scibot 08 Dec 2023
      https://assets.nemoarchive.org/dat-uioqy8b

      DOI: 10.1038/s41380-023-01970-y

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    nature.com/articles/s41380-023-01970-y
  39. arxiv.org arxiv.org
    Untitled document
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    1. scibot 08 Dec 2023
      URL:https://data.nemoarchive.org/biccn/grant/u01_devhu/kriegstein/transcriptome/scell/10x_v2/huma

      DOI: 10.48550/arXiv.2303.02498

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    arxiv.org/pdf/2303.02498.pdf
  40. www.biorxiv.org www.biorxiv.org
    A molecularly defined and spatially resolved cell atlas of the whole mouse brain
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    1. scibot 08 Dec 2023
      https://nemoarchive.org

      DOI: 10.1101/2023.03.06.531348

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    biorxiv.org/content/10.1101/2023.03.06.531348v1
  41. www.biorxiv.org www.biorxiv.org
    The cell type composition of the adult mouse brain revealed by single cell and spatial genomics
    1
    1. scibot 08 Dec 2023
      www.nemoarchive.org

      DOI: 10.1101/2023.03.06.531307

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    biorxiv.org/content/10.1101/2023.03.06.531307v2
  42. www.mdpi.com www.mdpi.com
    Cultured Mesenchymal Cells from Nasal Turbinate as a Cellular Model of the Neurodevelopmental Component of Schizophrenia Etiology
    1
    1. scibot 08 Dec 2023
      https://assets.nemoarchive.org/dat-0rsydy7

      DOI: 10.3390/ijms242015339

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    mdpi.com/1422-0067/24/20/15339
  43. www.sciencedirect.com www.sciencedirect.com
    Generation of ventralized human thalamic organoids with thalamic reticular nucleus
    1
    1. scibot 08 Dec 2023
      https://data.nemoarchive.org/biccn/grant/u01_devhu/kriegstein/transcriptome/scell/10x_v2/human/processed/counts/

      DOI: 10.1016/j.stem.2023.03.007

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    sciencedirect.com/science/article/pii/S1934590923000784
  44. www.biorxiv.org www.biorxiv.org
    MANGEM: a web app for Multimodal Analysis of Neuronal Gene expression, Electrophysiology and Morphology
    1
    1. scibot 08 Dec 2023
      Neuroscience Multi-Omic Archive

      DOI: 10.1101/2023.04.03.535322

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    biorxiv.org/content/10.1101/2023.04.03.535322v1
  45. www.biorxiv.org www.biorxiv.org
    Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer’s disease brains
    1
    1. scibot 08 Dec 2023
      NeMO: https://nemoarchive.org/)

      DOI: 10.1101/2023.05.12.540037

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    biorxiv.org/content/10.1101/2023.05.12.540037v1
  46. www.nature.com www.nature.com
    Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
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    1. scibot 08 Dec 2023
      https://nemoarchive.org)

      DOI: 10.1038/s41556-023-01194-w

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    nature.com/articles/s41556-023-01194-w
  47. www.biorxiv.org www.biorxiv.org
    Cell-type specific molecular signatures of aging revealed in a brain-wide transcriptomic cell-type atlas
    1
    1. scibot 08 Dec 2023
      https://nemoarchive.org/.

      DOI: 10.1101/2023.07.26.550355

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    biorxiv.org/content/10.1101/2023.07.26.550355v1
  48. link.springer.com link.springer.com
    On Complexity and Emergence: Linking the Hypotheses of Pharmacoresistance in Epilepsy
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    1. scibot 08 Dec 2023
      https://nemoarchive.org/)

      DOI: 10.1007/978-3-031-36526-3_4

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    link.springer.com/chapter/10.1007/978-3-031-36526-3_4
  49. www.nature.com www.nature.com
    Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic references
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    1. scibot 08 Dec 2023
      at https://assets.nemoarchive.org/dat-0rsydy7

      DOI: 10.1038/s41592-023-02003-w

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    nature.com/articles/s41592-023-02003-w
  50. www.biorxiv.org www.biorxiv.org
    Joint inference of discrete cell types and continuous type-specific variability in single-cell datasets with MMIDAS
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    1. scibot 08 Dec 2023
      https://assets.nemoarchive.org/dat-jb2f34y.

      DOI: 10.1101/2023.10.02.560574

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    AKT Signaling Modulates Latent Viral Reservoir Viability in HIV-1-Infected Blood-Brain Barrier Pericytes
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    Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis
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    Robust and annotation-free analysis of alternative splicing across diverse cell types in mice
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    Enhancer viruses for combinatorial cell-subclass-specific labeling
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    Iterative single-cell multi-omic integration using online learning
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  105. www.sciencedirect.com www.sciencedirect.com
    A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
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    1. scibot 13 Apr 2022
      https://assets.nemoarchive.org/dat-jb2f34y

      DOI: 10.1016/j.cell.2021.04.021

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  106. www.nature.com www.nature.com
    A transcriptomic atlas of mouse cerebellar cortex comprehensively defines cell types
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    1. scibot 13 Apr 2022
      (https://nemoarchive.org/)

      DOI: 10.1038/s41586-021-03220-z

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  107. www.jneurosci.org www.jneurosci.org
    Cell type-specific oxidative stress genomic signatures in the globus pallidus of dopamine depleted mice
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    1. scibot 13 Apr 2022
      rom https://portal.nemoarchive.org/;

      DOI: 10.1523/JNEUROSCI.1634-20.2020

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    jneurosci.org/content/40/50/9772
  108. www.sciencedirect.com www.sciencedirect.com
    Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types
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    1. scibot 13 Apr 2022
      http://data.nemoarchive.org

      DOI: 10.1016/j.celrep.2020.108029

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    sciencedirect.com/science/article/pii/S2211124720310147
  109. www.sciencedirect.com www.sciencedirect.com
    Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells
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    1. scibot 13 Apr 2022
      http://data.nemoarchive.org

      DOI: 10.1016/j.cell.2020.09.057

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  110. link.springer.com link.springer.com
    Farewell, Neuroinformatics!
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    1. scibot 13 Apr 2022
      https://nemoarchive.org/

      DOI: 10.1007/s12021-021-09552-5

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  111. www.sciencedirect.com www.sciencedirect.com
    Explorers of the cells: Toward cross-platform knowledge integration to evaluate neuronal function
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    1. scibot 13 Apr 2022
      https://nemoarchive.org

      DOI: 10.1016/j.neuron.2021.10.025

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    sciencedirect.com/science/article/pii/S0896627321008400
  112. Nov 2021
  113. www.sciencedirect.com www.sciencedirect.com
    How many markers are needed to robustly determine a cell's type?
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    1. scibot 09 Nov 2021
      RRID:SCR_016152

      DOI: 10.1016/j.isci.2021.103292

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    sciencedirect.com/science/article/pii/S258900422101261X
  114. Oct 2021
  115. www.nature.com www.nature.com
    A multimodal cell census and atlas of the mammalian primary motor cortex
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    1. scibot 21 Oct 2021
      RRID:SCR_016152

      DOI: 10.1038/s41586-021-03950-0

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  116. www.nature.com www.nature.com
    An atlas of gene regulatory elements in adult mouse cerebrum
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    1. scibot 21 Oct 2021
      RRID:SCR_016152

      DOI: 10.1038/s41586-021-03604-1

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  117. www.nature.com www.nature.com
    Comparative cellular analysis of motor cortex in human, marmoset and mouse
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    1. scibot 14 Oct 2021
      RRID:SCR_016152

      DOI: 10.1038/s41586-021-03465-8

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  118. www.nature.com www.nature.com
    A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
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    1. scibot 14 Oct 2021
      RRID:SCR_016152

      DOI: 10.1038/s41586-021-03500-8

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  119. Jul 2021
  120. www.nature.com www.nature.com
    Conserved cell types with divergent features in human versus mouse cortex
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    1. scibot 31 Jul 2021
      https://nemoarchive.org/

      DOI: 10.1038/s41586-019-1506-7

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  121. Jun 2021
  122. www.nature.com www.nature.com
    Phenotypic variation of transcriptomic cell types in mouse motor cortex
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    1. scibot 05 Jun 2021
      http://data.nemoarchive.org/

      DOI: 10.1038/s41586-020-2907-3

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  123. Mar 2021
  124. www.nature.com www.nature.com
    Joint profiling of histone modifications and transcriptome in single cells from mouse brain
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    1. scibot 03 Mar 2021
      RRID:SCR_016152

      DOI: 10.1038/s41592-021-01060-3

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  125. Feb 2021
  126. www.biorxiv.org www.biorxiv.org
    An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum
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    1. scibot 25 Feb 2021
      RRID:SCR_016152

      DOI: 10.1101/2020.05.10.087585

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    biorxiv.org/content/10.1101/2020.05.10.087585v2
  127. Sep 2020
  128. link.springer.com link.springer.com
    Epigenetic modulation of AREL1 and increased HLA expression in brains of multiple system atrophy patients
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    1. scibot 16 Sep 2020
      RRID:SCR_016152

      DOI: 10.1186/s40478-020-00908-7

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