129 Matching Annotations
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    Localized mRNAs and protein synthesis in cortical layer 1
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    sciencedirect.com/science/article/pii/S2211124726007655
  3. Jul 2026
  4. www.nature.com www.nature.com
    An atlas of primate insular cortex reveals a signal-processing strategy in von Economo neurons
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    nature.com/articles/s41556-026-02009-4
  5. Jun 2026
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    Conserved Cell Type Signatures Across the Brainstem and Spinal Cord in the Mouse Central Nervous System
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    biorxiv.org/content/10.64898/2026.06.09.728039v1
  7. Apr 2026
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    A Community Standard Multispecies Cell Atlas of the Basal Ganglia
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    biorxiv.org/content/10.64898/2026.04.14.717814v1
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    One-step induction of human GABAergic neurons promotes presynaptic development & synapse maturation
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    biorxiv.org/content/10.1101/2025.06.30.662293v3
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    2510.17064v3.pdf
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    arxiv.org/pdf/2510.17064
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    Cross-expression meta-analysis of mouse brain slices reveals coordinated gene expression across spatially adjacent cells
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    link.springer.com/article/10.1186/s13059-025-03747-8
  12. Feb 2026
  13. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Relational Database-Based Resource-Provenance Visualization Engine: with an application to BICAN data
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    pmc.ncbi.nlm.nih.gov/articles/PMC12919532/
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    Unified Resource Browser: An Interactive and Reconfigurable Web Framework for Biomedical Metadata Exploration, Visualization, and Management
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    pmc.ncbi.nlm.nih.gov/articles/PMC12919424/
  15. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Lipid Metabolism‐Driven CNS Repair via Targeted EV Delivery of PAF to Neurons
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    pmc.ncbi.nlm.nih.gov/articles/PMC12919374/
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    CellScope: high-performance cell atlas workflow with tree-structured representation
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    pmc.ncbi.nlm.nih.gov/articles/PMC12855844/
  17. Jan 2026
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    Reactive oligodendrocytes promote glioblastoma progression through CCL5/CCR5-mediated glioma stem cell maintenance
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    sciencedirect.com/science/article/pii/S0896627325009390
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    Accurate, scalable, and unified single-cell atlas integration with scBIOT
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    biorxiv.org/content/10.64898/2026.01.02.697395v1
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    Transcriptional Heterogeneity Reveals a Synaptic Gene Program in Developing and Adult Human Oligodendrocyte Precursor Cells
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    biorxiv.org/content/10.64898/2026.01.01.697017v1
  21. Dec 2025
  22. 54.241.53.176 54.241.53.176
    2025.12.09.693234.full-html.html
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    Multiscale Spatial Transcriptomic Atlas of Human Basal Ganglia Cell-Type and Cellular Community Organization
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    biorxiv.org/content/10.64898/2025.12.02.691876v1
  24. Nov 2025
  25. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Continuous cell-type diversification in mouse visual cortex development
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    pmc.ncbi.nlm.nih.gov/articles/PMC12589121/
  26. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Transcriptomic and spatial organization of telencephalic GABAergic neurons
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    pmc.ncbi.nlm.nih.gov/articles/PMC12589142/
  27. Sep 2025
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    Cell-type-specific enrichment of somatic aneuploidy in the mammalian brain
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    sciencedirect.com/science/article/pii/S0896627325005902
  29. Aug 2025
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    A consensus definition for deep layer 6 excitatory neurons in mouse somatosensory, visual, and motor cortex
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    sciencedirect.com/science/article/pii/S2211124725009386
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    Spatial dissimilarity analysis in single-cell transcriptomics
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    sciencedirect.com/science/article/pii/S2667237525001778
  32. dx.doi.org dx.doi.org
    scDCT: a conditional diffusion-based deep learning model for high-fidelity single-cell cross-modality translation
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    dx.doi.org/10.1093/bib/bbaf400
  33. Jul 2025
  34. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Quantification of transcript isoforms at the single-cell level using SCALPEL
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    pmc.ncbi.nlm.nih.gov/articles/PMC12246054/
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    Human CLOCK enhances neocortical function
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    nature.com/articles/s41593-025-01993-4
  36. www.biorxiv.org www.biorxiv.org
    CellScope: High-Performance Cell Atlas Workflow with Tree-Structured Representation
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    biorxiv.org/content/10.1101/2025.02.15.638400v1
  37. Jun 2025
  38. www.cell.com www.cell.com
    Exploring brain circuits, one cell type—or more— at a time
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  39. Mar 2025
  40. 52.53.155.43 52.53.155.43
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  41. Dec 2024
  42. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A consensus definition for deep layer 6 excitatory neurons in mouse neocortex
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    pmc.ncbi.nlm.nih.gov/articles/PMC11580952/
  43. Sep 2024
  44. www.sciencedirect.com www.sciencedirect.com
    Areal specializations in the morpho-electric and transcriptomic properties of primate layer 5 extratelencephalic projection neurons
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    sciencedirect.com/science/article/pii/S2211124724010696
  45. Aug 2024
  46. www.nature.com www.nature.com
    Isoform cell-type specificity in the mouse primary motor cortex
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    nature.com/articles/s41586-021-03969-3
  47. elifesciences.org elifesciences.org
    Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans
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    elifesciences.org/articles/64875
  48. www.jneurosci.org www.jneurosci.org
    Cell type-specific oxidative stress genomic signatures in the globus pallidus of dopamine depleted mice
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    scTOP: physics-inspired order parameters for cellular identification and visualization
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    journals.biologists.com/dev/article/150/21/dev201873/334525/scTOP-physics-inspired-order-parameters-for
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    Genetic Insights of Schizophrenia via Single Cell RNA-Sequencing Analyses
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    Transcriptional networks of transient cell states during human prefrontal cortex development
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    frontiersin.org/articles/10.3389/fnmol.2023.1126438
  52. May 2024
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    Concerted neuron-astrocyte gene expression declines in aging and schizophrenia
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    biorxiv.org/content/10.1101/2024.01.07.574148v1
  54. Apr 2024
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    scButterfly: a versatile single-cell cross-modality translation method via dual-aligned variational autoencoders
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    ncbi.nlm.nih.gov/pmc/articles/PMC10998864/
  56. Mar 2024
  57. www.nature.com www.nature.com
    Single-cell epigenomics reveals mechanisms of human cortical development
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    nature.com/articles/s41586-021-03209-8
  58. Feb 2024
  59. www.biorxiv.org www.biorxiv.org
    Cell type-specific enrichment of somatic aneuploidy in the mammalian brain
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    biorxiv.org/content/10.1101/2023.12.18.572285v1
  60. Jan 2024
  61. www.biorxiv.org www.biorxiv.org
    Cell type-specific enrichment of somatic aneuploidy in the mammalian brain
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  62. www.biorxiv.org www.biorxiv.org
    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
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    biorxiv.org/content/10.1101/2022.11.06.515349v1
  63. www.science.org www.science.org
    Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex
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    science.org/doi/10.1126/science.adf0805
  64. www.science.org www.science.org
    Transcriptomic diversity of cell types across the adult human brain
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  65. Dec 2023
  66. www.nature.com www.nature.com
    Single-cell analysis of chromatin accessibility in the adult mouse brain
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    The molecular cytoarchitecture of the adult mouse brain
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  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer’s disease brains
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    ncbi.nlm.nih.gov/pmc/articles/PMC10546724/
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    Molecular features driving cellular complexity of human brain evolution
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    Molecular programs of regional specification and neural stem cell fate progression in macaque telencephalon
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    Droplet-based single-cell joint profiling of histone modifications and transcriptomes
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    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
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    science.org/doi/10.1126/science.adf6812
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    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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    science.org/doi/10.1126/sciadv.adh1914
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    Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus
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    Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology
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    ncbi.nlm.nih.gov/pmc/articles/PMC9164190/
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    A marmoset brain cell census reveals influence of developmental origin and functional class on neuronal identity
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    biorxiv.org/content/10.1101/2022.10.18.512442v2
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    A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
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    ncbi.nlm.nih.gov/pmc/articles/PMC10081189/
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    Identification of brain cell types underlying genetic association with word reading and correlated traits
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    nature.com/articles/s41380-023-01970-y
  79. arxiv.org arxiv.org
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    A molecularly defined and spatially resolved cell atlas of the whole mouse brain
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    biorxiv.org/content/10.1101/2023.03.06.531348v1
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    The cell type composition of the adult mouse brain revealed by single cell and spatial genomics
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    Cultured Mesenchymal Cells from Nasal Turbinate as a Cellular Model of the Neurodevelopmental Component of Schizophrenia Etiology
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    mdpi.com/1422-0067/24/20/15339
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    Generation of ventralized human thalamic organoids with thalamic reticular nucleus
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    MANGEM: a web app for Multimodal Analysis of Neuronal Gene expression, Electrophysiology and Morphology
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    biorxiv.org/content/10.1101/2023.04.03.535322v1
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    Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer’s disease brains
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    Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
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    Cell-type specific molecular signatures of aging revealed in a brain-wide transcriptomic cell-type atlas
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    biorxiv.org/content/10.1101/2023.07.26.550355v1
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    On Complexity and Emergence: Linking the Hypotheses of Pharmacoresistance in Epilepsy
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    link.springer.com/chapter/10.1007/978-3-031-36526-3_4
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    Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic references
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    Joint inference of discrete cell types and continuous type-specific variability in single-cell datasets with MMIDAS
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    biorxiv.org/content/10.1101/2023.10.02.560574v1
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    Sibling chimerism among microglia in marmosets
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    biorxiv.org/content/10.1101/2023.10.16.562516v1
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    Selective plasticity of fast and slow excitatory synapses on somatostatin interneurons in adult visual cortex
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    nature.com/articles/s41467-023-42968-y
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    A Global Transcriptional Atlas of the Effect of Sleep Deprivation in the Mouse Frontal Cortex
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    biorxiv.org/content/10.1101/2023.11.28.569011v1
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    AKT Signaling Modulates Latent Viral Reservoir Viability in HIV-1-Infected Blood-Brain Barrier Pericytes
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    Biallelic mutations in P4HTM cause syndromic obesity
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    dx.doi.org/10.2337/db22-1017
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    Early Alzheimer’s disease pathology in human cortex involves transient cell states
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    Uniform quantification of single-nucleus ATAC-seq data with Paired-Insertion Counting (PIC) and a model-based insertion rate estimator
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    link.springer.com/article/10.1038/s41592-023-02103-7
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    Comparative transcriptomics reveals human-specific cortical features
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    ncbi.nlm.nih.gov/pmc/articles/PMC10659116/
  99. Nov 2023
  100. www.science.org www.science.org
    Interindividual variation in human cortical cell type abundance and expression
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    science.org/doi/10.1126/science.adf2359
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    Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus
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    ncbi.nlm.nih.gov/pmc/articles/PMC10631741/
  102. Oct 2023
  103. www.science.org www.science.org
    A marmoset brain cell census reveals regional specialization of cellular identities
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    science.org/doi/10.1126/sciadv.adk3986
  104. www.science.org www.science.org
    Comparative transcriptomics reveals human-specific cortical features
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    science.org/doi/10.1126/science.ade9516
  105. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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    ncbi.nlm.nih.gov/pmc/articles/PMC10569716/
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    A marmoset brain cell census reveals regional specialization of cellular identities
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  107. Sep 2023
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    Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution
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    ncbi.nlm.nih.gov/pmc/articles/PMC10627823/
  109. www.biorxiv.org www.biorxiv.org
    Brain-wide Correspondence Between Neuronal Epigenomics and Long-Distance Projections
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    biorxiv.org/content/10.1101/2023.05.01.538832v1
  110. Aug 2023
  111. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Droplet-based single-cell joint profiling of histone modifications and transcriptomes
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    ncbi.nlm.nih.gov/pmc/articles/PMC10584685/
  112. Jul 2023
  113. www.sciencedirect.com www.sciencedirect.com
    Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex
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    sciencedirect.com/science/article/pii/S0092867423006797
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    A guide to the BRAIN Initiative Cell Census Network data ecosystem
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    journals.plos.org/plosbiology/article
  115. May 2023
  116. www.science.org www.science.org
    Dense functional and molecular readout of a circuit hub in sensory cortex
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    science.org/doi/10.1126/science.abl5981
  117. Feb 2023
  118. www.biorxiv.org www.biorxiv.org
    The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide
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    biorxiv.org/content/10.1101/2022.10.26.513573v1
  119. Jul 2022
  120. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Evolutionary innovations of human cerebral cortex viewed through the lens of high-throughput sequencing
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    onlinelibrary.wiley.com/doi/10.1002/dneu.22893
  121. Jun 2022
  122. link.springer.com link.springer.com
    Cortical VIP+ Interneurons in the Upper and Deeper Layers Are Transcriptionally Distinct
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    Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology
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  124. May 2022
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    An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
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  127. Apr 2022
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    Purkinje cell outputs selectively inhibit a subset of unipolar brush cells in the input layer of the cerebellar cortex
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    Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons
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    Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis
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    A transcriptomic atlas of mouse cerebellar cortex comprehensively defines cell types
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    Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types
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  152. Nov 2021
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  154. Oct 2021
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  159. Jul 2021
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  161. Jun 2021
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  163. Mar 2021
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  165. Feb 2021
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    An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum
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  167. Sep 2020
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    Epigenetic modulation of AREL1 and increased HLA expression in brains of multiple system atrophy patients
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