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Spatial determinants of antibody-drug conjugate SHR-A1811 efficacy in neoadjuvant treatment for HER2-positive breast cancer

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1. scibot 11 Apr 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.ccell.2025.03.017
  
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sciencedirect.com/science/article/pii/S1535610825001187
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Early Neutrophil Activation in Psoriatic Skin at Relapse Following Dead Sea Climatotherapy

1
1. scibot 08 Apr 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1111/exd.70094
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11969059/
Apr 2025
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PDF-html.html

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1. scibot 05 Apr 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1158/1535-7163.mct-24-0957
  
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2. scibot 04 Apr 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1158/1535-7163.mct-24-0957
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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52.53.155.43/faf96f8cc9641dd5f96a635325c9392694fd369a/PDF-html.html
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The molecular basis of octocoral calcification revealed by genome and skeletal proteome analyses

1
1. scibot 05 Apr 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giaf031
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11959691/
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Stratified Medicine Pediatrics: Cell-Free DNA and Serial Tumor Sequencing Identifies Subtype-Specific Cancer Evolution and Epigenetic States

1
1. scibot 04 Apr 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1158/2159-8290.CD-24-0916
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11962403/
Mar 2025
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Antagonistic roles for MITF and TFE3 in melanoma plasticity

1
1. scibot 29 Mar 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.celrep.2025.115474
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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sciencedirect.com/science/article/pii/S2211124725002451
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Distinct Molecular and Clinical Features of Specific Variants of KRAS Codon 12 in Pancreatic Adenocarcinoma

1
1. scibot 19 Mar 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1158/1078-0432.CCR-24-3149
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11911800/
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Acetalax and Bisacodyl for the Treatment of Triple-Negative Breast Cancer: A Combined Molecular and Preclinical Study

1
1. scibot 07 Mar 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1158/2767-9764.CRC-24-0435
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11869203/
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Multiomics analysis provides insights into musk secretion in muskrat and musk deer

1
1. scibot 07 Mar 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giaf006
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11878540/
www.frontiersin.org www.frontiersin.org

Effect of high-intensity intermittent rehabilitation training on physical function, gut microbiome and metabolite after percutaneous coronary intervention in patients with coronary heart disease

1
1. scibot 06 Mar 2025
  
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  RRID:SCR_020150
  
  DOI: 10.3389/fcvm.2024.1508456
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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frontiersin.org/journals/cardiovascular-medicine/articles/10.3389/fcvm.2024.1508456/full
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Outer radial glia promotes white matter regeneration after neonatal brain injury

1
1. scibot 05 Mar 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.xcrm.2025.101986
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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cell.com/cell-reports-medicine/abstract/S2666-3791(25)00059-X
Feb 2025
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Fusion oncoproteins and cooperating mutations define disease phenotypes in NUP98-rearranged leukemia

1
1. scibot 27 Feb 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1101/2025.01.21.25320683
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11838931/
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Methionine intervention induces PD-L1 expression to enhance the immune checkpoint therapy response in MTAP-deleted osteosarcoma

1
1. scibot 21 Feb 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.xcrm.2025.101977
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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sciencedirect.com/science/article/pii/S2666379125000503
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The integrative genomic and functional immunological analyses of colorectal cancer initiating cells to modulate stemness properties and the susceptibility to immune responses

1
1. scibot 20 Feb 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1186/s12967-025-06176-0
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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link.springer.com/article/10.1186/s12967-025-06176-0
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NSD2 drives t(4;14) myeloma cell dependence on adenylate kinase 2 by diverting one-carbon metabolism to the epigenome

1
1. scibot 20 Feb 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1182/blood.2023022859
  
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sciencedirect.com/science/article/pii/S0006497124009662
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CV1-secreting sCAR-T cells potentiate the abscopal effect of microwave ablation in heterogeneous tumors

1
1. scibot 20 Feb 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.xcrm.2025.101965
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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sciencedirect.com/science/article/pii/S2666379125000382
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Platinum-based chemotherapy induces opposing effects on immunotherapy response-related spatial and stromal biomarkers in the bladder cancer microenvironment

1
1. scibot 13 Feb 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1158/1078-0432.CCR-24-0724
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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aacrjournals.org/clincancerres/article/30/18/4227/747456/Platinum-Based-Chemotherapy-Induces-Opposing
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GDF-15 predicts epithelioid hemangioendothelioma aggressiveness and is down-regulated by sirolimus through ATF4/ATF5 suppression

1
1. scibot 13 Feb 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1158/1078-0432.CCR-23-3991
  
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aacrjournals.org/clincancerres/article/30/22/5122/749578/GDF-15-Predicts-Epithelioid-Hemangioendothelioma
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Activation of the cGAS/STING axis in genome-damaged hematopoietic cells does not impact blood cell formation or leukemogenesis

1
1. scibot 13 Feb 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1158/0008-5472.CAN-22-3860
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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aacrjournals.org/cancerres/article/83/17/2858/728589/Activation-of-the-cGAS-STING-Axis-in-Genome
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Pre-exposure to stress reduces loss of community and genetic diversity following severe environmental disturbance

1
1. scibot 11 Feb 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.cub.2025.01.037
  
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sciencedirect.com/science/article/pii/S0960982225000673
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Mapping intratumoral myeloid-T cell interactomes at single-cell resolution reveals targets for overcoming checkpoint inhibitor resistance

1
1. scibot 07 Feb 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1101/2024.10.28.620093
  
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52.53.155.43/b97c57717b8e9ffd85392521b55861178592850c/2024.10.28.620093.full-html.html
Jan 2025
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A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity

1
1. scibot 31 Jan 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giae116
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11775470/
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Spatial transcriptomic analysis identifies epithelium-macrophage crosstalk in endometriotic lesions

1
1. scibot 28 Jan 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.isci.2025.111790
  
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sciencedirect.com/science/article/pii/S2589004225000495
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Spatial and Single-Cell Analyses Reveal Heterogeneity of DNAM-1 Receptor–Ligand Interactions That Instructs Intratumoral γδT-cell Activity

1
1. scibot 25 Jan 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1158/0008-5472.CAN-24-1509
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11733534/
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Brain Transcriptome Changes Associated With an Acute Increase of Protein O‐GlcNAcylation and Implications for Neurodegenerative Disease

1
1. scibot 23 Jan 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1111/jnc.16302
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11741514/
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Early precursor-derived pituitary gland tissue-resident macrophages play a pivotal role in modulating hormonal balance

1
1. scibot 23 Jan 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.celrep.2024.115227
  
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sciencedirect.com/science/article/pii/S221112472401578X
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Differences in gene expression between high and low tolerance rainbow trout (Oncorhynchus mykiss) to acute thermal stress

1
1. scibot 15 Jan 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1371/journal.pone.0312694
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11709236/
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Phenotypic plasticity and increased infiltration of peripheral blood-derived TREM1+ mono-macrophages following radiotherapy in rectal cancer

1
1. scibot 14 Jan 2025
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.xcrm.2024.101887
  
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sciencedirect.com/science/article/pii/S266637912400658X
Dec 2024
52.53.155.43 52.53.155.43

uxae127-html.html

1
1. scibot 28 Dec 2024
  
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  RRID:SCR_016387
  
  DOI: 10.1093/cei/uxae127
  
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52.53.155.43/5ac0d444dc969e528d63af4f354ba2708adad670/uxae127-html.html
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Near telomere-to-telomere genome assembly of Mongolian cattle: implications for population genetic variation and beef quality

1
1. scibot 21 Dec 2024
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giae099
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11653892/
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The chromosome-level genome assembly of an endangered herb Bergenia scopulosa provides insights into local adaptation and genomic vulnerability under climate change

1
1. scibot 21 Dec 2024
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giae091
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11604060/
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De novo assembly and characterization of a highly degenerated ZW sex chromosome in the fish Megaleporinus macrocephalus

1
1. scibot 21 Dec 2024
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giae085
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11590113/
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Single-Cell Analysis of Bone Marrow CD8+ T Cells in Myeloid Neoplasms Reveals Pathways Associated with Disease Progression and Response to Treatment with Azacitidine

1
1. scibot 11 Dec 2024
  
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  RRID:SCR_016387
  
  DOI: 10.1158/2767-9764.CRC-24-0310
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11616010/
Nov 2024
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Targeting Catechol-O-Methyltransferase Induces Mitochondrial Dysfunction and Enhances the Efficacy of Radiotherapy in Glioma

1
1. scibot 08 Nov 2024
  
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  RRID:SCR_016387
  
  DOI: 10.1158/0008-5472.CAN-24-0134
  
  Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
  
  Curator: @scibot
  
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crc-24-0310-html.html

1
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Profiling steroid hormone landscape of bladder cancer reveals depletion of intratumoural androgens to castration levels: a cross-sectional study

2
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Acute increase of protein O-GlcNAcylation in mice leads to transcriptome changes in the brain opposite to what is observed in Alzheimer’s Disease

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EDC-3 and EDC-4 regulate embryonic mRNA clearance and biomolecular condensate specialization

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Sex-dependent differences in the ability of nicotine to modulate discrimination learning and cognitive flexibility in mice

1
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Whole-genome sequencing of the invasive golden apple snail Pomacea canaliculata from Asia reveals rapid expansion and adaptive evolution

1
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Single-cell transcriptome analysis of the early immune response in the lymph nodes of Borrelia burgdorferi-infected mice

1
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CXCR4 orchestrates the TOX-programmed exhausted phenotype of CD8+ T cells via JAK2/STAT3 pathway

1
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Immunophenotypic and molecular changes during progression of papillary urothelial carcinoma

1
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  DOI: 10.4111/icu.20230318
  
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Disruption of HSD17B12 in mouse hepatocytes leads to reduced body weight and defect in the lipid droplet expansion associated with microvesicular steatosis

1
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  DOI: 10.1096/fj.202400333RR
  
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Transcriptomic analysis of Asparagus officinalis cultivars with varying levels of freezing tolerance over fall acclimation and spring deacclimation periods

1
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p53R172H and p53R245W Hotspot Mutations Drive Distinct Transcriptomes in Mouse Mammary Tumors Through a Convergent Transcriptional Mediator

1
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Deciphering cancer genomes with GenomeSpy: a grammar-based visualization toolkit

1
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A trade-off in evolution: the adaptive landscape of spiders without venom glands

1
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ncbi.nlm.nih.gov/pmc/articles/PMC11299198/
Jul 2024
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Single-cell RNA Sequencing Identifies a Novel Subtype of Microglia with High Cd74 Expression that Facilitates White Matter Inflammation During Chronic Cerebral Hypoperfusion

1
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Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq

1
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ABC Efflux Transporters and Solute Carriers in the Early Developing Brain of a Marsupial Monodelphis domestica (South American Gray Short-Tailed Opossum)

1
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Loss of ADAM29 does not affect viability and fertility in mice but improves wound healing

1
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Exploring the role of polymorphic interspecies structural variants in reproductive isolation and adaptive divergence in Eucalyptus

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Short-chain fatty acid valerate reduces voluntary alcohol intake in male mice

1
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Cell-type-specific effects of age and sex on human cortical neurons

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Prenatal tuning of thalamic spontaneous activity patterns regulates somatosensory map resolution

2
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52.53.155.43/a7dcd09b97130d36ebf5e681970d32cc5f19936b/2024.03.15.585193v1.full-html.html
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Response rate and molecular correlates to encorafenib and binimetinib in BRAF-V600E mutant high-grade glioma

1
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Integrative molecular analyses of the MD Anderson prostate cancer patient-derived xenograft (MDA PCa PDX) series

1
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Early precursor-derived pituitary gland tissue-resident macrophages play a pivotal role in modulating hormonal balance

1
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Mitotic abnormalities precede microsatellite instability in lynch syndrome-associated colorectal tumourigenesis

1
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Monolayer culture alters EGFR inhibitor response through abrogation of microRNA-mediated feedback regulation

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  DOI: 10.1038/s41598-024-56920-7
  
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Multi-omic dataset of patient-derived tumor organoids of neuroendocrine neoplasms

1
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  DOI: 10.1093/gigascience/giae008
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10919335/
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Chromosome-level genome of the poultry shaft louse Menopon gallinae provides insight into the host-switching and adaptive evolution of parasitic lice

1
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  DOI: 10.1093/gigascience/giae004
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10904027/
Feb 2024
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The effect of sevoflurane exposure on cell-type-specific changes in the prefrontal cortex in young mice

1
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  DOI: 10.1111/jnc.16068
  
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Single-cell transcriptome analysis of the early immune response in the lymph nodes of Borrelia burgdorferi-infected mice

1
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  DOI: 10.1101/2023.11.29.569164
  
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biorxiv.org/content/10.1101/2023.11.29.569164v1
Jan 2024
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Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)

1
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  DOI: 10.46471/gigabyte.105
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10795108/
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Glucose Deprivation Promotes Pseudohypoxia and Dedifferentiation in Lung Adenocarcinoma

1
1. scibot 20 Jan 2024
  
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  DOI: 10.1158/0008-5472.CAN-23-1148
  
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Early microbial intervention reshapes phenotypes of newborn Bos taurus through metabolic regulations

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A comparative atlas of single-cell chromatin accessibility in the human brain

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NLRP3 inflammasome activation and symptom burden in KRAS-mutated CMML patients is reverted by IL-1 blocking therapy

1
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A high-quality chromosomal genome assembly of the sea cucumber Chiridota heheva and its hydrothermal adaptation

1
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  DOI: 10.1093/gigascience/giad107
  
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OvaPrint™ - a cell-free DNA methylation liquid biopsy for the risk assessment of high-grade serous ovarian cancer

1
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Multipotent progenitors instruct ontogeny of the superior colliculus

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  DOI: 10.1016/j.neuron.2023.11.009
  
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Mutational impact of APOBEC3A and APOBEC3B in a human cell line and comparisons to breast cancer

1
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  DOI: 10.1371/journal.pgen.1011043
  
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Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus

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A marmoset brain cell census reveals influence of developmental origin and functional class on neuronal identity

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Reversal of lactate and PD-1-mediated macrophage immunosuppression controls growth of PTEN/p53-deficient prostate cancer

1
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ccr-23-1197-html.html

1
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Is Gauchian genotyping of GBA1 variants reliable?

1
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Short-chain-fatty acid valerate reduces voluntary alcohol intake in male mice

1
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Selective inhibition of CDK9 in triple negative breast cancer

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  DOI: 10.1038/s41388-023-02892-3
  
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Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus

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Population-specific Mutation Patterns in Breast Tumors from African American, European American, and Kenyan Patients

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The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator

1
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A marmoset brain cell census reveals regional specialization of cellular identities

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Single-cell transcriptome analysis illuminating the characteristics of species-specific innate immune responses against viral infections

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A marmoset brain cell census reveals regional specialization of cellular identities

1
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Super-enhancer hijacking drives ectopic expression of hedgehog pathway ligands in meningiomas

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Prognostic Markers of DNA Methylation and Next-Generation Sequencing in Progressive Glioblastoma from the EORTC-26101 Trial

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An Early Neoplasia Index (ENI10), Based on Molecular Identity of CD10 Cells and Associated Stemness Biomarkers, is a Predictor of Patient Outcome in Many Cancers

1
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A chromosome-level assembly supports genome-wide investigation of the DMRT gene family in the golden mussel (Limnoperna fortunei)

1
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Construction and analysis of the chromosome-level haplotype-resolved genomes of two Crassostrea oyster congeners: Crassostrea angulata and Crassostrea gigas

1
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  DOI: 10.1093/gigascience/giad077
  
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Aug 2023
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Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids

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Chromosome-level genome and recombination map of the male buffalo

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Circadian modulation by time-restricted feeding rescues brain pathology and improves memory in mouse models of Alzheimer’s disease

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  DOI: 10.1016/j.cmet.2023.07.014
  
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can-22-3860-html.html

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  DOI: 10.1158/0008-5472.CAN-22-3860
  
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onlinelibrary.wiley.com onlinelibrary.wiley.com

Cooperative and competitive regulation of the astrocytic transcriptome by neurons and endothelial cells: Impact on astrocyte maturation

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  DOI: 10.1111/jnc.15908
  
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onlinelibrary.wiley.com/doi/10.1111/jnc.15908
Jul 2023
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Identification of sex chromosomes and primary sex ratio in the small hive beetle, a worldwide parasite of honey bees

1
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sox1a:eGFP transgenic line and single-cell transcriptomics reveal the origin of zebrafish intraspinal serotonergic neurons

1
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  DOI: 10.1016/j.isci.2023.107342
  
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GSK-3 Inhibitor Elraglusib Enhances Tumor-Infiltrating Immune Cell Activation in Tumor Biopsies and Synergizes with Anti-PD-L1 in a Murine Model of Colorectal Cancer

1
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ncbi.nlm.nih.gov/pmc/articles/PMC10342141/
Jun 2023
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Identification of transcriptional regulatory variants in pig duodenum, liver, and muscle tissues

1
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  DOI: 10.1093/gigascience/giad042
  
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Single-cell RNA-seq uncovers novel metabolic functions of Schwann cells beyond myelination

1
1. scibot 22 Jun 2023
  
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  DOI: 10.1111/jnc.15877
  
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onlinelibrary.wiley.com/doi/10.1111/jnc.15877
May 2023
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Genome assembly of an Australian native grass species reveals a recent whole-genome duplication and biased gene retention of genes involved in stress response

1
1. scibot 16 May 2023
  
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  RRID:SCR_020150
  
  DOI: 10.1093/gigascience/giad034
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10176504/
Apr 2023
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Structurally Complex Osteosarcoma Genomes Exhibit Limited Heterogeneity within Individual Tumors and across Evolutionary Time

1
1. scibot 14 Apr 2023
  
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  DOI: 10.1158/2767-9764.CRC-22-0348
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10093779/
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SWI/SNF Blockade Disrupts PU.1-Directed Enhancer Programs in Normal Hematopoietic Cells and Acute Myeloid Leukemia

1
1. scibot 12 Apr 2023
  
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  RRID:SCR_016387
  
  DOI: 10.1158/0008-5472.CAN-22-2129
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10071820/
52.53.155.43 52.53.155.43

Cooperative super-enhancer inactivation caused by heterozygous loss of CREBBP and KMT2D skews B cell fate decisions and yields T cell-depleted lymphomas

1
1. scibot 05 Apr 2023
  
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  RRID:SCR_016387
  
  DOI: 10.1101/2023.02.13.528351
  
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52.53.155.43/f4b0048cc7a871a681c39b83d20e963f1e4d0c2b/2023.02.13.528351v1.full-html.html
Mar 2023
link.springer.com link.springer.com

Effects of OsomeFood Clean Label plant-based meals on the gut microbiome

1
1. scibot 31 Mar 2023
  
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  RRID:SCR_016387
  
  DOI: 10.1186/s12866-023-02822-z
  
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pubs.acs.org pubs.acs.org

Immunoanalytical Approach for Detecting and Identifying Ancestral Peptide Biomarkers in Early Earth Analogue Environments

1
1. scibot 30 Mar 2023
  
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  DOI: 10.1021/acs.analchem.2c05386
  
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GSK-3 inhibitor elraglusib enhances tumor-infiltrating immune cell activation in tumor biopsies and synergizes with anti-PD-L1 in a murine model of colorectal cancer

1
1. scibot 10 Mar 2023
  
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  DOI: 10.1101/2023.02.07.527499
  
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Chromosome-level assembly of the common vetch (Vicia sativa) reference genome

1
1. scibot 02 Mar 2023
  
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  RRID:SCR_016387
  
  DOI: 10.46471/gigabyte.38
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9650280/
Feb 2023
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A chromosome-level genome assembly of Ostrea denselamellosa provides initial insights into its evolution

1
1. scibot 16 Feb 2023
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.ygeno.2023.110582
  
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Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus

1
1. scibot 16 Feb 2023
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giad002
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9912274/
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Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds

1
1. scibot 08 Feb 2023
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giad003
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad003/7025323
onlinelibrary.wiley.com onlinelibrary.wiley.com

Hippocampal RNA sequencing in mice selectively bred for high and low activity

1
1. scibot 03 Feb 2023
  
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  RRID:SCR_020150
  
  DOI: 10.1111/gbb.12832
  
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onlinelibrary.wiley.com/doi/10.1111/gbb.12832
Jan 2023
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B7-H3 Suppresses Antitumor Immunity via the CCL2–CCR2–M2 Macrophage Axis and Contributes to Ovarian Cancer Progression

1
1. scibot 12 Jan 2023
  
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  DOI: 10.1158/2326-6066.CIR-21-0407
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9414298/
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Elevated Mutational Age in Blood of Children Treated for Cancer Contributes to Therapy-Related Myeloid Neoplasms

1
1. scibot 11 Jan 2023
  
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  RRID:SCR_016387
  
  DOI: 10.1158/2159-8290.CD-22-0120
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7613255/
Dec 2022
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Single-cell RNA sequencing uncovers dynamic roadmap and cell-cell communication during buffalo spermatogenesis

1
1. scibot 30 Dec 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.isci.2022.105733
  
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Distinct Tumor Necrosis Factor Alpha Receptors Dictate Stem Cell Fitness Versus Lineage Output in Dnmt3a-Mutant Clonal Hematopoiesis

1
1. scibot 16 Dec 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1158/2159-8290.CD-22-0086
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9716249/
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A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization

1
1. scibot 16 Dec 2022
  
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  RRID:SCR_020150
  
  DOI: 10.1093/gigascience/giac120
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9730501/
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Loss of GM-CSF-dependent instruction of alveolar macrophages in COVID-19 provides a rationale for inhaled GM-CSF treatment

1
1. scibot 08 Dec 2022
  
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  DOI: 10.1016/j.xcrm.2022.100833
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9663750/
Nov 2022
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The whole-genome assembly of an endangered Salicaceae species: Chosenia arbutifolia (Pall.) A. Skv

1
1. scibot 17 Nov 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giac109
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac109/6827246
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High-quality genome assembles from key Hawaiian coral species

1
1. scibot 12 Nov 2022
  
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  RRID:SCR_020150
  
  DOI: 10.1093/gigascience/giac098
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac098/6815755
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Capparis spinosa var. herbacea genome provides the first genomic instrument for a diversity and evolution study of the Capparaceae family

1
1. scibot 03 Nov 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giac106
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac106/6780308
Oct 2022
aacrjournals.org aacrjournals.org

CircIPO7 Promotes Nasopharyngeal Carcinoma Metastasis and Cisplatin Chemoresistance by Facilitating YBX1 Nuclear Localization

1
1. scibot 27 Oct 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1158/1078-0432.CCR-22-0991
  
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aacrjournals.org/clincancerres/article/28/20/4521/709577/CircIPO7-Promotes-Nasopharyngeal-Carcinoma
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Continuous sensing of IFNα by hepatic endothelial cells shapes a vascular antimetastatic barrier

1
1. scibot 27 Oct 2022
  
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  RRID:SCR_016387
  
  DOI: 10.7554/eLife.80690
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9596162/
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Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population

1
1. scibot 26 Oct 2022
  
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  RRID:SCR_020150
  
  DOI: 10.1093/gigascience/giac090
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9553416/
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Interleukin-33-activated neuropeptide CGRP-producing memory Th2 cells cooperate with somatosensory neurons to induce conjunctival itch

1
1. scibot 23 Oct 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.immuni.2022.09.016
  
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sciencedirect.com/science/article/pii/S1074761322005118
Jul 2022
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A chromosome-level genome of the booklouse, Liposcelis brunnea, provides insight into louse evolution and environmental stress adaptation

1
1. scibot 27 Jul 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giac062
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9295366/
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Chromosome-level assembly and annotation of the blue catfish Ictalurus furcatus, an aquaculture species for hybrid catfish reproduction, epigenetics, and heterosis studies

1
1. scibot 14 Jul 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giac070
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9270728/
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Chromosome-level genome assembly of Plazaster borealis sheds light on the morphogenesis of multiarmed starfish and its regenerative capacity

1
1. scibot 14 Jul 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giac063
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9270726/
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Volatile profiles of commercial vetch prepared via different processing methods

1
1. scibot 08 Jul 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1016/j.foodchem.2022.133569
  
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sciencedirect.com/science/article/pii/S030881462201531X
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A chromosome-level genome assembly and intestinal transcriptome of Trypoxylus dichotomus (Coleoptera: Scarabaeidae) to understand its lignocellulose digestion ability

1
1. scibot 06 Jul 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giac059
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac059/6619297
Jun 2022
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A chromosome-level genome assembly of Artocarpus nanchuanensis (Moraceae), an extremely endangered fruit tree

1
1. scibot 17 Jun 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giac042
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac042/6608506
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Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus

1
1. scibot 09 Jun 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giac039
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9155146/
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EED is required for mouse primordial germ cell differentiation in the embryonic gonad

1
1. scibot 09 Jun 2022
  
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  DOI: 10.1016/j.devcel.2022.05.012
  
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sciencedirect.com/science/article/pii/S1534580722003690
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Longitudinal single-cell dynamics of chromatin accessibility and mitochondrial mutations in chronic lymphocytic leukemia mirror disease history

1
1. scibot 07 Jun 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1158/2159-8290.CD-21-0276
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8660953/
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Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers

1
1. scibot 01 Jun 2022
  
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  RRID:SCR_016387
  
  DOI: 10.1093/gigascience/giac045
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac045/6593429
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The assembled and annotated genome of the masked palm civet (Paguma larvata)

1
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ncbi.nlm.nih.gov/pmc/articles/PMC9116208/
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An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

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  DOI: 10.1101/2020.02.29.970558
  
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A Phenogenetic Axis that Modulates Clinical Manifestation and Predicts Treatment Outcome in Primary Myeloid NeoplasmsLandscape of Myeloid Neoplasms in a Chinese Cohort

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  DOI: 10.1158/2767-9764.CRC-21-0194
  
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aacrjournals.org/cancerrescommun/article/2/4/258/694752/A-Phenogenetic-Axis-that-Modulates-Clinical
Apr 2022
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A high-quality assembly reveals genomic characteristics, phylogenetic status, and causal genes for leucism plumage of Indian peafowl

1
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ncbi.nlm.nih.gov/pmc/articles/PMC8985102/
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A high-quality assembled genome and its comparative analysis decode the adaptive molecular mechanism of the number one Chinese cotton variety CRI-12

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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac019/6562534
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A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta)

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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac026/6562532
Mar 2022
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The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features

1
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ncbi.nlm.nih.gov/pmc/articles/PMC8952263/
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Fully resolved assembly of Cryptosporidium parvum

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ncbi.nlm.nih.gov/pmc/articles/PMC8848321/
Feb 2022
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Widespread discrepancy in Nnt genotypes and genetic backgrounds complicates granzyme A and other knockout mouse studies

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  DOI: 10.7554/eLife.70207
  
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  DOI: 10.7554/eLife.70207
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8816380/
Jan 2022
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Chromosome-level genome assembly of the shuttles hoppfish, Periophthalmus modestus

1
1. scibot 15 Jan 2022
  
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  DOI: 10.1093/gigascience/giab089
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giab089/6505119
Dec 2021
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A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck)

1
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  DOI: 10.1093/gigascience/giab081
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8685854/
Oct 2021
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Chromosome-level genome assemblies of Channa argus and Channa maculata and comparative analysis of their temperature adaptability

1
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  DOI: 10.1093/gigascience/giab070
  
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academic.oup.com/gigascience/article/10/10/giab070/6407244
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Isoform cell-type specificity in the mouse primary motor cortex

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  DOI: 10.1038/s41586-021-03969-3
  
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Comparative cellular analysis of motor cortex in human, marmoset and mouse

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  DOI: 10.1038/s41586-021-03465-8
  
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A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

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  DOI: 10.1038/s41586-021-03500-8
  
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nature.com/articles/s41586-021-03500-8
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Role of miR-2392 in driving SARS-CoV-2 infection

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sciencedirect.com/science/article/pii/S2211124721013036
Aug 2021
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94172714-ec33-4f50-8b23-1d03da9cfcd8_54402_-_jamsari_jamsari-html.html

1
1. scibot 24 Aug 2021
  
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  DOI: 10.12688/f1000research.54402.1
  
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LiquidCNA: tracking subclonal evolution from longitudinal liquid biopsies using somatic copy number alterations

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  DOI: 10.1016/j.isci.2021.102889
  
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sciencedirect.com/science/article/pii/S2589004221008579
Jul 2021
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Phenotypic Screening Following Transcriptomic Deconvolution to Identify Transcription Factors Mediating Axon Growth Induced by a Kinase Inhibitor - Jeffrey A. Lowell, Nicholas O’Neill, Matt C. Danzi, Hassan Al-Ali, John L. Bixby, Vance P. Lemmon, 2021

3
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  DOI: 10.1177/24725552211026270
  
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  DOI: 10.1177/24725552211026270
  
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  DOI: 10.1177/24725552211026270
  
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journals.sagepub.com/doi/full/10.1177/24725552211026270
Jun 2021
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Isolation of nuclei from mouse white adipose tissues for single-nucleus genomics

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  DOI: 10.1016/j.xpro.2021.100612
  
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sciencedirect.com/science/article/pii/S2666166721003191
Apr 2021
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Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia

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  DOI: 10.1038/s41593-020-00794-1
  
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nature.com/articles/s41593-020-00794-1
Mar 2021
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A Ketogenic Diet Differentially Affects Neuron And Astrocyte Transcription

1
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  DOI: 10.1111/jnc.15313
  
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onlinelibrary.wiley.com/doi/10.1111/jnc.15313
Feb 2021
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The draft genome sequence of the grove snail Cepaea nemoralis

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  DOI: 10.1093/g3journal/jkaa071
  
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academic.oup.com/g3journal/article-abstract/11/2/jkaa071/6080775
Nov 2020
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Mapping endothelial-cell diversity in cerebral cavernous malformations at single-cell resolution

1
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  DOI: 10.7554/eLife.61413
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7609066/
Oct 2020
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Non-Muscle-Invasive Bladder Carcinoma with Respect to Basal Versus Luminal Keratin Expression

1
1. scibot 31 Oct 2020
  
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  DOI: 10.3390/ijms21207726
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7589917/
Sep 2020
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Regulation of dynamic pigment cell states at single-cell resolution

1
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  DOI: 10.7554/eLife.60388
  
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elifesciences.org/articles/60388
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A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning

1
1. scibot 11 Sep 2020
  
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  DOI: 10.1093/gigascience/giaa088
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7433188/
Jan 2020
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Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling

1
1. scibot 13 Jan 2020
  
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  DOI: 10.1016/j.cell.2019.10.044
  
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sciencedirect.com/science/article/pii/S0092867419312218

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