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academic.oup.com academic.oup.com

MultiMS2: A curated multi-modal, multi-energy spectral library for metabolomics

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1. scibot 16 Jul 2026
  
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  RRID:SCR_016445
  
  DOI: 10.1093/gigascience/giag069
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giag069/8705428
May 2026
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Tumor-draining lymph nodes in ovarian cancer lack germinal centers but harbor tumor-reactive memory B cells clonally linked to intra-tumoral B cells

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1. scibot 29 May 2026
  
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  DOI: 10.1016/j.immuni.2026.04.017
  
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sciencedirect.com/science/article/pii/S1074761326001792
Apr 2026
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Demystifying machine learning approaches in digital bone imaging using microCT and HRpQCT

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1. scibot 23 Apr 2026
  
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  DOI: 10.1016/j.bonr.2026.101911
  
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pmc.ncbi.nlm.nih.gov/articles/PMC13098347/
Oct 2025
www.biorxiv.org www.biorxiv.org

Exploring the correspondence between gene expression and thalamic nuclei using the THALMANAC resource

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1. scibot 07 Oct 2025
  
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  RRID:SCR_016445
  
  DOI: 10.1101/2025.09.30.679413
  
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biorxiv.org/content/10.1101/2025.09.30.679413v1
May 2025
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Single-cell transcriptomic profiling reveals diversity in human iNKT cells across hematologic tissues

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1. scibot 16 May 2025
  
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  DOI: 10.1016/j.celrep.2025.115587
  
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sciencedirect.com/science/article/pii/S2211124725003584
Mar 2024
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CD8+ T cell memory induced by successive SARS-CoV-2 mRNA vaccinations is characterized by shifts in clonal dominance

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1. scibot 08 Mar 2024
  
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  DOI: 10.1016/j.celrep.2024.113887
  
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2. scibot 08 Mar 2024
  
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  DOI: 10.1016/j.celrep.2024.113887
  
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sciencedirect.com/science/article/pii/S2211124724002158
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hCoCena: A toolbox for network-based co-expression analysis and horizontal integration of transcriptomic datasets

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1. scibot 05 Mar 2024
  
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  DOI: 10.1016/j.xpro.2024.102922
  
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sciencedirect.com/science/article/pii/S266616672400087X
Sep 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

ensemblQueryR: fast, flexible and high-throughput querying of Ensembl LD API endpoints in R

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1. scibot 22 Sep 2023
  
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  RRID:SCR_016445
  
  DOI: 10.46471/gigabyte.91
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10507293/
Mar 2023
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huva: A human variation analysis framework to predict gene perturbation from population-scale multi-omics data

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1. scibot 28 Mar 2023
  
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  DOI: 10.1016/j.xpro.2023.102193
  
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sciencedirect.com/science/article/pii/S266616672300151X
Nov 2022
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Human variation in population-wide gene expression data predicts gene perturbation phenotype

1
1. scibot 02 Nov 2022
  
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  RRID:SCR_016445
  
  DOI: 10.1016/j.isci.2022.105328
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9614568/
May 2022
f1000research.com f1000research.com

Adamant: a JSON schema-based metadata editor for research data management workflows

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1. scibot 05 May 2022
  
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  RRID:SCR_016445
  
  DOI: 10.12688/f1000research.110875.1
  
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f1000research.com/articles/11-475
Oct 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Simplifying the development of portable, scalable, and reproducible workflows

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1. scibot 23 Oct 2021
  
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  RRID:SCR_016445
  
  DOI: 10.7554/eLife.71069
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8514239/
Aug 2021
academic.oup.com academic.oup.com

Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

2
1. scibot 14 Aug 2021
  
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  RRID:SCR_016445
  
  DOI: 10.1093/gigascience/giz095
  
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2. scibot 01 Aug 2021
  
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  RRID:SCR_016445
  
  DOI: 10.1093/gigascience/giz095
  
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  Curator: @evieth
  
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  RRIDCUR:Validated RRID:SCR_016445
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academic.oup.com/gigascience/article/8/11/giz095/5611001
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Transcriptional Circuit Fragility Influences HIV Proviral Fate

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1. scibot 12 Aug 2021
  
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  DOI: 10.1016/j.celrep.2019.03.007
  
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sciencedirect.com/science/article/pii/S2211124719303146
Jan 2020
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Building Containerized Workflows Using the BioDepot-Workflow-Builder

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1. scibot 13 Jan 2020
  
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  RRID:SCR_016445
  
  DOI: 10.1016/j.cels.2019.08.007
  
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  Curator: @ethanbadger
  
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sciencedirect.com/science/article/pii/S2405471219302765