27 Matching Annotations
  1. Aug 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome report: First reference genome of Vaccinium floribundum Kunth, an emblematic Andean species
    1
    1. scibot 21 Aug 2024
      RRID:SCR_016967

      DOI: 10.1093/g3journal/jkae136

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    ncbi.nlm.nih.gov/pmc/articles/PMC11304950/
  3. Jul 2024
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chemical mutagenesis of Listeria monocytogenes for increased tolerance to benzalkonium chloride shows independent genetic underpinnings and off-target antibiotic resistance
    1
    1. scibot 23 Jul 2024
      RRID:SCR_016967

      DOI: 10.1371/journal.pone.0305663

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    ncbi.nlm.nih.gov/pmc/articles/PMC11259264/
  5. Apr 2024
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Whole genome assembly and annotation of the King Angelfish (Holacanthus passer) gives insight into the evolution of marine fishes of the Tropical Eastern Pacific
    1
    1. scibot 03 Apr 2024
      RRID:SCR_016967

      DOI: 10.46471/gigabyte.115

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    ncbi.nlm.nih.gov/pmc/articles/PMC10973836/
  7. Mar 2024
  8. dx.doi.org dx.doi.org
    Evaluation of Nanopore Sequencing on Polar Bodies for Routine Pre-Implantation Genetic Testing for Aneuploidy
    1
    1. scibot 21 Mar 2024
      RRID:SCR_016967

      DOI: 10.1093/clinchem/hvae024

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    dx.doi.org/10.1093/clinchem/hvae024
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic analysis using RNA sequencing and phenotypic analysis of Salmonella enterica after acid exposure for different time durations using adaptive laboratory evolution
    1
    1. scibot 17 Mar 2024
      RRID:SCR_016967

      DOI: 10.3389/fmicb.2024.1348063

      Resource: Porechop (RRID:SCR_016967)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10929716/
  10. Feb 2024
  11. www.biorxiv.org www.biorxiv.org
    Chemical mutagenesis of Listeria monocytogenes for increased tolerance to benzalkonium chloride shows independent genetic underpinnings and off-target antibiotic resistance
    1
    1. scibot 09 Feb 2024
      RRID:SCR_016967

      DOI: 10.1101/2023.12.11.571107

      Resource: Porechop (RRID:SCR_016967)

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    biorxiv.org/content/10.1101/2023.12.11.571107v1
  12. Dec 2023
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Adaptive laboratory evolution of Salmonella enterica in acid stress
    1
    1. scibot 02 Dec 2023
      RRID:SCR_016967

      DOI: 10.3389/fmicb.2023.1285421

      Resource: Porechop (RRID:SCR_016967)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10687551/
  14. Aug 2023
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids
    1
    1. scibot 29 Aug 2023
      RRID:SCR_016967

      DOI: 10.1093/gigascience/giad064

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    ncbi.nlm.nih.gov/pmc/articles/PMC10460159/
  16. Apr 2023
  17. www.medrxiv.org www.medrxiv.org
    Evaluation of nanopore sequencing on polar bodies for routine PGT-A
    1
    1. scibot 27 Apr 2023
      RRID:SCR_016967

      DOI: 10.1101/2023.04.17.23288670

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    medrxiv.org/content/10.1101/2023.04.17.23288670v1
  18. Mar 2023
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies
    1
    1. scibot 02 Mar 2023
      RRID:SCR_016967

      DOI: 10.46471/gigabyte.27

      Resource: Porechop (RRID:SCR_016967)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650304/
  20. 52.53.155.43 52.53.155.43
    A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus
    1
    1. scibot 02 Mar 2023
      RRID:SCR_016967

      DOI: 10.1093/jhered/esad003

      Resource: Porechop (RRID:SCR_016967)

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    52.53.155.43/c66fa9b2ea7c129831e4f3a5d878c6edc0d7a347/esad003-html.html
  21. Feb 2023
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An updated version of the Madagascar periwinkle genome
    1
    1. scibot 10 Feb 2023
      RRID:SCR_016967

      DOI: 10.12688/f1000research.129212.1

      Resource: Porechop (RRID:SCR_016967)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9902796/
  23. Jan 2023
  24. www.biorxiv.org www.biorxiv.org
    A chromosome-scale assembly for tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes
    1
    1. scibot 20 Jan 2023
      RRID:SCR_016967

      DOI: 10.1101/2023.01.10.523438

      Resource: Porechop (RRID:SCR_016967)

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    biorxiv.org/content/10.1101/2023.01.10.523438v1
  25. Jul 2022
  26. academic.oup.com academic.oup.com
    Chromosome-Level Genome Assembly of the Butter Clam Saxidomus purpuratus
    1
    1. scibot 30 Jul 2022
      RRID:SCR_016967

      DOI: 10.1093/gbe/evac106

      Resource: Porechop (RRID:SCR_016967)

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    academic.oup.com/gbe/article/14/7/evac106/6650251
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of Plazaster borealis sheds light on the morphogenesis of multiarmed starfish and its regenerative capacity
    1
    1. scibot 14 Jul 2022
      RRID:SCR_016967

      DOI: 10.1093/gigascience/giac063

      Resource: Porechop (RRID:SCR_016967)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9270726/
  28. May 2022
  29. gigabytejournal.com gigabytejournal.com
    LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
    1
    1. scibot 10 May 2022
      RRID:SCR_016967

      DOI: 10.46471/gigabyte.51

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    gigabytejournal.com/articles/51
  30. Mar 2022
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods
    1
    1. scibot 31 Mar 2022
      RRID:SCR_016967

      DOI: 10.1093/gigascience/giac022

      Resource: Porechop (RRID:SCR_016967)

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    ncbi.nlm.nih.gov/pmc/articles/PMC8952264/
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater
    1
    1. scibot 31 Mar 2022
      RRID:SCR_016967

      DOI: 10.1093/gigascience/giac025

      Resource: Porechop (RRID:SCR_016967)

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    ncbi.nlm.nih.gov/pmc/articles/PMC8963300/
  33. Oct 2021
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants
    1
    1. scibot 02 Oct 2021
      RRID:SCR_016967

      DOI: 10.7554/eLife.68479

      Resource: Porechop (RRID:SCR_016967)

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    ncbi.nlm.nih.gov/pmc/articles/PMC8478411/
  35. Jul 2021
  36. academic.oup.com academic.oup.com
    Genomic evidence of neo-sex chromosomes in the eastern yellow robin
    1
    1. scibot 30 Jul 2021
      Porechop

      DOI: 10.1093/gigascience/giz111

      Resource: Porechop (RRID:SCR_016967)

      Curator: @Naa003

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      RRIDCUR:Missing RRID:SCR_016967
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    academic.oup.com/gigascience/article/8/9/giz111/5559526
  37. academic.oup.com academic.oup.com
    Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
    1
    1. scibot 30 Jul 2021
      Porechop

      DOI: 10.1093/gigascience/giz104

      Resource: Porechop (RRID:SCR_016967)

      Curator: @Naa003

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      RRIDCUR:Missing RRID:SCR_016967
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    academic.oup.com/gigascience/article/8/8/giz104/5552683
  38. Mar 2021
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A New Micromonospora Strain with Antibiotic Activity Isolated from the Microbiome of a Mid-Atlantic Deep-Sea Sponge
    1
    1. scibot 04 Mar 2021
      RRID:SCR_016967

      DOI: 10.3390/md19020105

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      Curator: @evieth

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      RRIDCUR:Validated RRID:SCR_016967
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    ncbi.nlm.nih.gov/pmc/articles/PMC7918784/
  40. Jan 2021
  41. academic.oup.com academic.oup.com
    Comparison of long-read methods for sequencing and assembly of a plant genome
    1
    1. scibot 05 Jan 2021
      RRID:SCR_016967

      DOI: 10.1093/gigascience/giaa146

      Resource: Porechop (RRID:SCR_016967)

      Curator: @evieth

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    academic.oup.com/gigascience/article/9/12/giaa146/6042729
  42. Sep 2020
  43. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
    1
    1. scibot 25 Sep 2020
      RRID:SCR_016967

      DOI: 10.1093/gigascience/giaa099

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      Curator: @evieth

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    pubmed.ncbi.nlm.nih.gov/32947622/
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish
    1
    1. scibot 23 Sep 2020
      RRID:SCR_016967

      DOI: 10.1093/gigascience/giaa067

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      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC7301629/
  45. Jan 2020
  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information
    1
    1. scibot 13 Jan 2020
      RRID:SCR_016967

      DOI: 10.1093/gigascience/giz125

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      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC6889754/
  47. academic.oup.com academic.oup.com
    The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
    1
    1. scibot 13 Jan 2020
      RRID:SCR_016967

      DOI: 10.1093/gigascience/giz160

      Resource: Porechop (RRID:SCR_016967)

      Curator: @ethanbadger

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      RRID:SCR_016967 RRIDCUR:Validated
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    academic.oup.com/gigascience/article/9/1/giz160/5694103