43 Matching Annotations
  1. Apr 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Whole genome assembly and annotation of the King Angelfish (Holacanthus passer) gives insight into the evolution of marine fishes of the Tropical Eastern Pacific
    1
    1. scibot 03 Apr 2024
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.115

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    ncbi.nlm.nih.gov/pmc/articles/PMC10973836/
  3. Mar 2024
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome of the poultry shaft louse Menopon gallinae provides insight into the host-switching and adaptive evolution of parasitic lice
    1
    1. scibot 03 Mar 2024
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giae004

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    ncbi.nlm.nih.gov/pmc/articles/PMC10904027/
  5. Jan 2024
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)
    1
    1. scibot 20 Jan 2024
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.105

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    ncbi.nlm.nih.gov/pmc/articles/PMC10795108/
  7. Nov 2023
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations
    1
    1. scibot 30 Nov 2023
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giad100

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    ncbi.nlm.nih.gov/pmc/articles/PMC10673639/
  9. Jul 2023
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
    1
    1. scibot 25 Jul 2023
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giad051

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    ncbi.nlm.nih.gov/pmc/articles/PMC10360393/
  11. Mar 2023
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of a benthic associated Syngnathiformes species: the common dragonet, Callionymus lyra
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.6

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    ncbi.nlm.nih.gov/pmc/articles/PMC9631949/
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.34

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650288/
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SMARTdenovo: a de novo assembler using long noisy reads
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.15

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    ncbi.nlm.nih.gov/pmc/articles/PMC9632051/
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.27

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650304/
  16. Jan 2023
  17. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome-level genome assembly of Dastarcus helophoroides provides insights into CYP450 genes expression upon insecticide exposure
    1
    1. scibot 10 Jan 2023
      RRID:SCR_017225

      DOI: 10.1002/ps.7319

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    onlinelibrary.wiley.com/doi/10.1002/ps.7319
  18. Dec 2022
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization
    1
    1. scibot 16 Dec 2022
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giac120

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    ncbi.nlm.nih.gov/pmc/articles/PMC9730501/
  20. Sep 2022
  21. academic.oup.com academic.oup.com
    Identification of candidate sex‐specific genomic regions in male and female Asian arowana genomes
    1
    1. scibot 16 Sep 2022
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giac085

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac085/6700067
  22. Aug 2022
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Insights into chromosomal evolution and sex determination of Pseudobagrus ussuriensis (Bagridae, Siluriformes) based on a chromosome-level genome
    1
    1. scibot 11 Aug 2022
      RRID:SCR_017225

      DOI: 10.1093/dnares/dsac028

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    ncbi.nlm.nih.gov/pmc/articles/PMC9358014/
  24. Jul 2022
  25. 52.53.155.43 52.53.155.43
    A chromosome-scale genome assembly of the okapi (Okapia johnstoni)
    1
    1. scibot 27 Jul 2022
      SCR_017225

      DOI: 10.1093/jhered/esac033

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    52.53.155.43/ca38f07792210b0253061a6791db53fa681aee2f/esac033-html.html
  26. May 2022
  27. gigabytejournal.com gigabytejournal.com
    LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
    1
    1. scibot 10 May 2022
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.51

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    gigabytejournal.com/articles/51
  28. Apr 2022
  29. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome of the human blood fluke Schistosoma japonicum identifies the genomic basis of host-switching
    1
    1. scibot 07 Apr 2022
      RRID:SCR_017225

      DOI: 10.1016/j.celrep.2022.110638

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    sciencedirect.com/science/article/pii/S2211124722003904
  30. Mar 2022
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods
    1
    1. scibot 31 Mar 2022
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giac022

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    ncbi.nlm.nih.gov/pmc/articles/PMC8952264/
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome size evolution in the diverse insect order Trichoptera
    1
    1. scibot 03 Mar 2022
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giac011

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    ncbi.nlm.nih.gov/pmc/articles/PMC8881205/
  33. Jan 2022
  34. onlinelibrary.wiley.com onlinelibrary.wiley.com
    A high-quality chromosome-level genome of the endangered roughskin sculpin provides insights into its evolution and adaptation
    1
    1. scibot 22 Jan 2022
      RRID:SCR_017225

      DOI: 10.1111/1755-0998.13582

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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13582
  35. Nov 2021
  36. academic.oup.com academic.oup.com
    De novo screening of disease-resistant genes from the chromosome-level genome of rare minnow using CRISPR-cas9 random mutation
    1
    1. scibot 23 Nov 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giab075

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    academic.oup.com/gigascience/article/10/11/giab075/6431779
  37. www.nature.com www.nature.com
    A draft genome, resequencing, and metabolomes reveal the genetic background and molecular basis of the nutritional and medicinal properties of loquat (Eriobotrya japonica (Thunb.) Lindl)
    1
    1. scibot 06 Nov 2021
      RRID:SCR_017225

      DOI: 10.1038/s41438-021-00657-1

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    nature.com/articles/s41438-021-00657-1
  38. Oct 2021
  39. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of Channa argus and Channa maculata and comparative analysis of their temperature adaptability
    1
    1. scibot 26 Oct 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giab070

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    academic.oup.com/gigascience/article/10/10/giab070/6407244
  40. Aug 2021
  41. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome‐level assembly of Southern catfish (Silurus meridionalis) provides insights into visual adaptation to the nocturnal and benthic lifestyles
    1
    1. scibot 01 Aug 2021
      RRID:SCR_017225

      DOI: 10.1111/1755-0998.13338

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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13338
  42. academic.oup.com academic.oup.com
    Chromosome-level genome assembly reveals the unique genome evolution of the swimming crab ( Portunus trituberculatus )
    1
    1. scibot 01 Aug 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giz161

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    academic.oup.com/gigascience/article/9/1/giz161/5697200
  43. Jul 2021
  44. academic.oup.com academic.oup.com
    A chromosome-level draft genome of the grain aphid Sitobion miscanthi
    1
    1. scibot 29 Jul 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giz101

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    academic.oup.com/gigascience/article/8/8/giz101/5552228
  45. May 2021
  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola)
    1
    1. scibot 27 May 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giab035

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    ncbi.nlm.nih.gov/pmc/articles/PMC8138834/
  47. Apr 2021
  48. academic.oup.com academic.oup.com
    A chromosome-level reference genome of the hazelnut, Corylus heterophylla Fisch
    1
    1. scibot 24 Apr 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giab027

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    academic.oup.com/gigascience/article/10/4/giab027/6237163
  49. Mar 2021
  50. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
    1
    1. scibot 20 Mar 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giab017

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    academic.oup.com/gigascience/article/10/3/giab017/6170950
  51. Feb 2021
  52. academic.oup.com academic.oup.com
    The draft genome sequence of the grove snail Cepaea nemoralis
    1
    1. scibot 28 Feb 2021
      RRID:SCR_017225

      DOI: 10.1093/g3journal/jkaa071

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    academic.oup.com/g3journal/advance-article-abstract/doi/10.1093/g3journal/jkaa071/6080775
  53. Jan 2021
  54. academic.oup.com academic.oup.com
    Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation
    1
    1. scibot 14 Jan 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa148

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    academic.oup.com/gigascience/article/10/1/giaa148/6067174
  55. academic.oup.com academic.oup.com
    Comparison of long-read methods for sequencing and assembly of a plant genome
    1
    1. scibot 05 Jan 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa146

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    academic.oup.com/gigascience/article/9/12/giaa146/6042729
  56. Dec 2020
  57. academic.oup.com academic.oup.com
    Long-read assembly of the Brassica napus reference genome Darmor-bzh
    1
    1. scibot 19 Dec 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa137

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    academic.oup.com/gigascience/article/9/12/giaa137/6034787
  58. Sep 2020
  59. academic.oup.com academic.oup.com
    Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis
    1
    1. scibot 23 Sep 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa006

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    academic.oup.com/gigascience/article/9/2/giaa006/5758190
  60. academic.oup.com academic.oup.com
    CSA: A high-throughput c hromosome- s cale a ssembly pipeline for vertebrate genomes
    1
    1. scibot 17 Sep 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa034

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    academic.oup.com/gigascience/article/9/5/giaa034/5843736
  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish
    1
    1. scibot 16 Sep 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa067

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    ncbi.nlm.nih.gov/pmc/articles/PMC7301629/
  62. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of the female western mosquitofish ( Gambusia affinis )
    1
    1. scibot 16 Sep 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa092

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    academic.oup.com/gigascience/article/9/8/giaa092/5897807
  63. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
    1
    1. scibot 16 Sep 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa088

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    ncbi.nlm.nih.gov/pmc/articles/PMC7433188/
  64. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome‐level genome assembly of a cyprinid fish Onychostoma macrolepis by integration of Nanopore Sequencing, Bionano and Hi‐C technology
    1
    1. scibot 07 Sep 2020
      RRID:SCR_017225

      DOI: 10.1111/1755-0998.13190

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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13190
  65. academic.oup.com academic.oup.com
    Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family
    1
    1. scibot 06 Sep 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa013

      Resource: WTDBG (RRID:SCR_017225)

      Curator: @Naa003

      SciCrunch record: RRID:SCR_017225

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      RRIDCUR:Validated RRID:SCR_017225
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    academic.oup.com/gigascience/article/9/3/giaa013/5771296
  66. Jan 2020
  67. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giz125

      Resource: WTDBG (RRID:SCR_017225)

      Curator: @evieth

      SciCrunch record: RRID:SCR_017225

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      RRID:SCR_017225 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC6889754/
  68. academic.oup.com academic.oup.com
    The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giz160

      Resource: WTDBG (RRID:SCR_017225)

      Curator: @ethanbadger

      SciCrunch record: RRID:SCR_017225

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      RRID:SCR_017225 RRIDCUR:Validated
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    academic.oup.com/gigascience/article/9/1/giz160/5694103
  69. academic.oup.com academic.oup.com
    De novo genome assembly of the endangered Acer yangbiense , a plant species with extremely small populations endemic to Yunnan Province, China
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giz085

      Resource: WTDBG (RRID:SCR_017225)

      Curator: @Naa003

      SciCrunch record: RRID:SCR_017225

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      RRID:SCR_017225 RRIDCUR:Validated
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    academic.oup.com/gigascience/article/8/7/giz085/5532406
  70. academic.oup.com academic.oup.com
    Chromosomal-level reference genome of Chinese peacock butterfly ( Papilio bianor ) based on third-generation DNA sequencing and Hi-C analysis
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giz128

      Resource: WTDBG (RRID:SCR_017225)

      Curator: @ethanbadger

      SciCrunch record: RRID:SCR_017225

      What is this?

      RRID:SCR_017225 RRIDCUR:Validated
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    academic.oup.com/gigascience/article/8/11/giz128/5612101