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Oct 2025
www.biorxiv.org www.biorxiv.org

Exploring the correspondence between gene expression and thalamic nuclei using the THALMANAC resource

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1. scibot 07 Oct 2025
  
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  RRID:SCR_020999
  
  DOI: 10.1101/2025.09.30.679413
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
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biorxiv.org/content/10.1101/2025.09.30.679413v1
Sep 2025
www.sciencedirect.com www.sciencedirect.com

Ultrabright chemical labeling enables rapid neural connectivity profiling in large tissue samples

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1. scibot 19 Sep 2025
  
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  RRID:SCR_020999
  
  DOI: 10.1016/j.neuron.2025.08.022
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
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sciencedirect.com/science/article/pii/S0896627325006579
52.53.155.43 52.53.155.43

2025.09.11.675542v1.full-html.html

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1. scibot 16 Sep 2025
  
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  RRID:JCR_020999
  
  DOI: 10.1101/2025.09.11.675542
  
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  Curator: @dhovakimyan1
  
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52.53.155.43/c387023fb0d36ff166828936ead84ed8b786ec42/2025.09.11.675542v1.full-html.html
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

DeMBA: a developmental atlas for navigating the mouse brain in space and time

1
1. scibot 06 Sep 2025
  
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  RRID:SCR_020999
  
  DOI: 10.1038/s41467-025-63177-9
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12397216/
Apr 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Molecular elucidation of brain lipofuscin in aging and Neuronal Ceroid Lipofuscinosis

1
1. scibot 19 Apr 2025
  
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  RRID:SCR_020999
  
  DOI: 10.21203/rs.3.rs-6010379/v1
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11957193/
Mar 2025
www.sciencedirect.com www.sciencedirect.com

Segregated basal ganglia output pathways correspond to genetically divergent neuronal subclasses

1
1. scibot 29 Mar 2025
  
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  RRID:SCR_020999
  
  DOI: 10.1016/j.celrep.2025.115454
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
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sciencedirect.com/science/article/pii/S2211124725002256
Feb 2025
52.53.155.43 52.53.155.43

Thalamic integration of basal ganglia and cerebellar circuits during motor learning

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1. scibot 07 Feb 2025
  
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  RRID:SCR_020999
  
  DOI: 10.1101/2024.10.31.621388
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
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52.53.155.43/b66f84227b9fbbd1c4ef4fdb22a5839f5982ae10/2024.10.31.621388.full-html.html
Oct 2024
www.nature.com www.nature.com

Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space

1
1. scibot 02 Oct 2024
  
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  RRID:SCR_020999
  
  DOI: 10.1038/s41597-024-03863-3
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
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nature.com/articles/s41597-024-03863-3
Feb 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases

1
1. scibot 28 Feb 2024
  
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  RRID:SCR_020999
  
  DOI: 10.3389/fninf.2024.1284107
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10884250/
Jan 2024
www.sciencedirect.com www.sciencedirect.com

Targeted micro-fiber arrays for measuring and manipulating localized multi-scale neural dynamics over large, deep brain volumes during behavior

1
1. scibot 19 Jan 2024
  
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  RRID:SCR_020999
  
  DOI: 10.1016/j.neuron.2023.12.011
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
  Curator: @scibot
  
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sciencedirect.com/science/article/pii/S0896627323009704
Dec 2023
www.biorxiv.org www.biorxiv.org

epDevAtlas: Mapping GABAergic cells and microglia in postnatal mouse brains

1
1. scibot 01 Dec 2023
  
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  RRID:SCR_020999
  
  DOI: 10.1101/2023.11.24.568585
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
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biorxiv.org/content/10.1101/2023.11.24.568585v1
Nov 2023
www.sciencedirect.com www.sciencedirect.com

Dopamine pathways mediating affective state transitions after sleep loss

1
1. scibot 03 Nov 2023
  
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  RRID:SCR_020999
  
  DOI: 10.1016/j.neuron.2023.10.002
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
  Curator: @scibot
  
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sciencedirect.com/science/article/pii/S0896627323007584
Sep 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Developmental Mouse Brain Common Coordinate Framework

1
1. scibot 30 Sep 2023
  
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  RRID:SCR_020999
  
  DOI: 10.1101/2023.09.14.557789
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
  Curator: @scibot
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10515964/
www.nature.com www.nature.com

Thalamocortical control of cell-type specificity drives circuits for processing whisker-related information in mouse barrel cortex

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1. scibot 29 Sep 2023
  
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  RRID:SCR_020999
  
  DOI: 10.1038/s41467-023-41749-x
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
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nature.com/articles/s41467-023-41749-x
Jul 2023
www.nature.com www.nature.com

AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures

1
1. scibot 29 Jul 2023
  
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  RRID:SCR_020999
  
  DOI: 10.1038/s41597-023-02389-4
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
  Curator: @scibot
  
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nature.com/articles/s41597-023-02389-4
Mar 2023
www.sciencedirect.com www.sciencedirect.com

Thalamic control of sensory processing and spindles in a biophysical somatosensory thalamoreticular circuit model of wakefulness and sleep

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1. scibot 04 Mar 2023
  
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  RRID:SCR_020999
  
  DOI: 10.1016/j.celrep.2023.112200
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
  Curator: @scibot
  
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sciencedirect.com/science/article/pii/S2211124723002115
Nov 2021
www.sciencedirect.com www.sciencedirect.com

The organization and development of cortical interneuron presynaptic circuits are area specific

1
1. scibot 10 Nov 2021
  
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  RRID:SCR_020999
  
  DOI: 10.1016/j.celrep.2021.109993
  
  Resource: Allen Mouse Brain Common Coordinate Framework (RRID:SCR_020999)
  
  Curator: @scibot
  
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sciencedirect.com/science/article/pii/S2211124721014728