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    Spatial transcriptomics of the developing mouse brain immune landscape reveals effects of maternal immune activation and microbiome depletion
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    nature.com/articles/s41593-025-02162-3
  3. Jan 2026
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    SLC39A10 drives M2 macrophage polarization and gastric cancer progression through the MAPK14(p38α) pathway
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    sciencedirect.com/science/article/pii/S2589004225026616
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    Protocol to evaluate mouse brain spatial cell type-resolved transcriptomic discoveries using 10× Visium spatial transcriptomics and FLEX scRNA-seq
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    sciencedirect.com/science/article/pii/S2666166725006835
  6. Dec 2025
  7. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    CD146+CAFs mediate immunosuppression in gastric cancer via COL4A1: potential therapeutic targets
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    pmc.ncbi.nlm.nih.gov/articles/PMC12718570/
  8. Nov 2025
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    SOCS1 Protects Acute Myeloid Leukemia against Allogeneic T Cell–Mediated Cytotoxicity
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    Trilaciclib triggers a neutrophil-related immune response and sensitizes non-small cell lung cancer to anti-PD-1 therapy
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  12. Oct 2025
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  14. Sep 2025
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    Spatially patterned kidney assembloids recapitulate progenitor self-assembly and enable high-fidelity in vivo disease modeling
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    The Ubiquitin–Proteasome System is an Important Driver of EBV-Associated Nasopharyngeal Carcinoma Progression: A Meta-Analysis of Transcriptomics Data
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    biorxiv.org/content/10.1101/2025.08.30.673297v1
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    Spatial colocalization and molecular crosstalk of myofibroblastic CAFs and tumor cells shape lymph node metastasis in oral squamous cell carcinoma
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    An antibody-toxin conjugate targeting CD47 linked to the bacterial toxin listeriolysin O for cancer immunotherapy
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    Plasma exosomes from individuals with type 2 diabetes drive breast cancer aggression in patient-derived organoids
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    An HIV fusion-inhibitory lipopeptide provides robust post-exposure prophylaxis and prevents viral reservoir seeding in macaques
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  21. Jul 2025
  22. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Insights into human melanocyte development and characteristics through pluripotent stem cells combined with single-cell sequencing
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  23. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Dissecting FAP+ Cell Diversity in Pancreatic Cancer Uncovers an Interferon-Response Subtype of Cancer-Associated Fibroblasts with Tumor-Restraining Properties
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  24. Jun 2025
  25. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Spatial–Temporal Diversity of Extrachromosomal DNA Shapes Urothelial Carcinoma Evolution and the Tumor Immune Microenvironment
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    Adventitial fibroblasts direct smooth muscle cell-state transition in pulmonary vascular disease
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    elifesciences.org/reviewed-preprints/98558v2
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    Distinct molecular patterns in R6/2 HD mouse brain: Insights from spatiotemporal transcriptomics
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  28. May 2025
  29. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Intratumoral Fusobacterium nucleatum Recruits Tumor-Associated Neutrophils to Promote Gastric Cancer Progression and Immune Evasion
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    Epigenetic silencing of DNA sensing pathway by FOXM1 blocks stress ligand-dependent antitumor immunity and immune memory
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    Inhibition of autotaxin activity with IOA-289 decreases fibrosis in mouse E0771 breast tumors
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    onlinelibrary.wiley.com/doi/10.1002/ijc.35471
  32. Mar 2025
  33. 52.53.155.43 52.53.155.43
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    Comparative Single-Cell Transcriptomics of Human Neuroblastoma and Preclinical Models Reveals Conservation of an Adrenergic Cell State
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  35. Feb 2025
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    Individualized patient tumor organoids faithfully preserve human brain tumor ecosystems and predict patient response to therapy
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    Myofibroblasts emerge during alveolar regeneration following influenza-virus-induced lung injury
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  39. Jan 2025
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    Spatial transcriptomic analysis identifies epithelium-macrophage crosstalk in endometriotic lesions
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    Neonatal Brain Injury Triggers Niche-Specific Changes to Cellular Biogeography
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    Phenotypic plasticity and increased infiltration of peripheral blood-derived TREM1+ mono-macrophages following radiotherapy in rectal cancer
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  43. Dec 2024
  44. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Exploring the Role of Ccn3 in Type III Cell of Mice Taste Buds
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    Microglial lipid phosphatase SHIP1 limits complement-mediated synaptic pruning in the healthy developing hippocampus
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  46. www.biorxiv.org www.biorxiv.org
    Combined inhibition of S100A4 and TIGIT suppresses late-stage breast cancer metastasis to the lung by activating T and NK cells
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    biorxiv.org/content/10.1101/2024.11.24.624743v1
  47. Nov 2024
  48. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Spatial Multiomics Reveals Intratumoral Immune Heterogeneity with Distinct Cytokine Networks in Lung Cancer Brain Metastases
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    NF-ΚB Activation as a Key Driver in Chronic Lymphocytic Leukemia Evolution to Richter’s Syndrome: Unraveling the Influence of Immune Microenvironment Dynamics
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  50. Sep 2024
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Reconstitution of the Multiple Myeloma Microenvironment Following Lymphodepletion with BCMA CAR-T Therapy
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  52. Aug 2024
  53. www.cell.com www.cell.com
    Single-cell dissection of the human blood-brain barrier and glioma blood-tumor barrier
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    Functional Contribution and Clinical Implication of Cancer-Associated Fibroblasts in Glioblastoma
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    ncbi.nlm.nih.gov/pmc/articles/PMC10922678/
  55. Jul 2024
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    Timing of whole genome duplication is associated with tumor-specific MHC-II depletion in serous ovarian cancer
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  57. Jun 2024
  58. www.sciencedirect.com www.sciencedirect.com
    Nicotinamide metabolism face-off between macrophages and fibroblasts manipulates the microenvironment in gastric cancer
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  59. May 2024
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    Integrative molecular and spatial analysis reveals evolutionary dynamics and tumor-immune interplay of in situ and invasive acral melanoma
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  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Tumor niche network-defined subtypes predict immunotherapy response of esophageal squamous cell cancer
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  62. www.biorxiv.org www.biorxiv.org
    Psilocybin Promotes Cell-Type-Specific Changes in the Orbitofrontal Cortex Revealed by Single-Nucleus RNA-seq
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    biorxiv.org/content/10.1101/2024.01.07.573163v1
  63. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Thrombopoietin mimetic stimulates bone marrow vascular and stromal niches to mitigate acute radiation syndrome
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  64. Apr 2024
  65. aacrjournals.org aacrjournals.org
    Single-cell transcriptomics reveals pre-existing COVID-19 vulnerability factors in lung cancer patients
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    Spatial and temporal mapping of breast cancer lung metastases identify TREM2 macrophages as regulators of the metastatic boundary
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    aacrjournals.org/cancerdiscovery/article/13/12/2610/731625/Spatial-and-Temporal-Mapping-of-Breast-Cancer-Lung
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    Regulation of muscle hypertrophy through granulin: Relayed communication among mesenchymal progenitors, macrophages, and satellite cells
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  68. Feb 2024
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    Multi-organ single-cell RNA sequencing in mice reveals early hyperglycemia responses that converge on fibroblast dysregulation
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    Comparative transcriptomic analysis of bovine mesenchymal stromal cells reveals tissue-source and species-specific differences
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  71. Jan 2024
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    Single-cell transcriptomics of the immune system in ME/CFS at baseline and following symptom provocation
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  73. dx.doi.org dx.doi.org
    Vulture: cloud-enabled scalable mining of microbial reads in public scRNA-seq data
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    dx.doi.org/10.1093/gigascience/giad117
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    Integrative analysis of neuroblastoma by single-cell RNA sequencing identifies the NECTIN2-TIGIT axis as a target for immunotherapy
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    An exhausted-like microglial population accumulates in aged and APOE4 genotype Alzheimer’s brains
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  76. Dec 2023
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    Integrated multi-omics profiling to dissect the spatiotemporal evolution of metastatic hepatocellular carcinoma
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  79. Nov 2023
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    Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve
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  81. Oct 2023
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    Alpha-1 adrenergic signaling drives cardiac regeneration via extracellular matrix remodeling transcriptional program in zebrafish macrophages
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  83. www.cell.com www.cell.com
    Single-cell transcriptome profiling reveals immune and stromal cell heterogeneity in primary Sjögren’s syndrome
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    cell.com/iscience/abstract/S2589-0042(23)02020-5
  84. Sep 2023
  85. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Spatially Distinct Otic Mesenchyme Cells show Molecular and Functional Heterogeneity Patterns Before Hearing Onset
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    Single-cell profiling of murine bladder cancer identifies sex-specific transcriptional signatures with prognostic relevance
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  87. Jul 2023
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    Temporal transcriptome features identify early skeletal commitment during human epiphysis development at single-cell resolution
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  89. Jun 2023
  90. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Single-cell RNA-seq uncovers novel metabolic functions of Schwann cells beyond myelination
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    onlinelibrary.wiley.com/doi/10.1111/jnc.15877
  91. Apr 2023
  92. www.biorxiv.org www.biorxiv.org
    Brain and blood single-cell transcriptomics in acute and subacute phases after experimental stroke
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    biorxiv.org/content/10.1101/2023.03.31.535150v1
  93. Mar 2023
  94. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Proliferative exhausted CD8+ T cells exacerbate long-lasting anti-tumor effects in human papillomavirus-positive head and neck squamous cell carcinoma
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    ncbi.nlm.nih.gov/pmc/articles/PMC9946444/
  95. Dec 2022
  96. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell RNA sequencing uncovers dynamic roadmap and cell-cell communication during buffalo spermatogenesis
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    ncbi.nlm.nih.gov/pmc/articles/PMC9793287/
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    Dental niche cells directly contribute to tooth reconstitution and morphogenesis
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    sciencedirect.com/science/article/pii/S2211124722016151
  98. Sep 2022
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    Ensembles of endothelial and mural cells promote angiogenesis in prenatal human brain
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  100. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Combined – whole blood and skin fibroblasts- transcriptomic analysis in Psoriatic Arthritis reveals molecular signatures of activity, resistance and early response to treatment
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    ncbi.nlm.nih.gov/pmc/articles/PMC9493103/
  101. Jun 2022
  102. www.sciencedirect.com www.sciencedirect.com
    Absence of microglia promotes diverse pathologies and early lethality in Alzheimer’s disease mice
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