31 Matching Annotations
  1. May 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Functional and antigenic landscape of the Nipah virus receptor binding protein
    1
    1. scibot 03 May 2024
      RRID:SCR_022606

      DOI: 10.1101/2024.04.17.589977

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11042328/
  3. 52.53.155.43 52.53.155.43
    2024.04.26.591029v1.full-html.html
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    1. scibot 02 May 2024
      RRID:SCR_022606

      DOI: 10.1101/2024.04.26.591029

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    52.53.155.43/6ec7a4e5d7565b8daa78ab9af91f4644128bfe2c/2024.04.26.591029v1.full-html.html
  4. 52.53.155.43 52.53.155.43
    Welsh_washington_0250E_26561-html.html
    1
    1. scibot 02 May 2024
      RRID:SCR_022606

      DOI: 10.7554/elife.86852

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    52.53.155.43/2ec9e0be5b2a2917ebda9e2d3e83d343c1d9ed72/Welsh_washington_0250E_26561-html.html
  5. Apr 2024
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    RNA structures within Venezuelan equine encephalitis virus E1 alter macrophage replication fitness and contribute to viral emergence
    1
    1. scibot 28 Apr 2024
      RRID:SCR_022606

      DOI: 10.1101/2024.04.09.588743

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11030350/
  7. Mar 2024
  8. www.biorxiv.org www.biorxiv.org
    High-throughput sequencing-based neutralization assay reveals how repeated vaccinations impact titers to recent human H1N1 influenza strains
    1
    1. scibot 15 Mar 2024
      RRID:SCR_022606

      DOI: 10.1101/2024.03.08.584176

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    biorxiv.org/content/10.1101/2024.03.08.584176v1
  9. Feb 2024
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Deep mutational scanning reveals functional constraints and antigenic variability of Lassa virus glycoprotein complex
    1
    1. scibot 15 Feb 2024
      RRID:SCR_022606

      DOI: 10.1101/2024.02.05.579020

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10871245/
  11. www.biorxiv.org www.biorxiv.org
    Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin
    1
    1. scibot 09 Feb 2024
      RRID:SCR_022606

      DOI: 10.1101/2023.12.12.571235

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    biorxiv.org/content/10.1101/2023.12.12.571235v1
  12. Jan 2024
  13. www.biorxiv.org www.biorxiv.org
    Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin
    1
    1. scibot 10 Jan 2024
      RRID:SCR_022606

      DOI: 10.1101/2023.12.12.571235

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    biorxiv.org/content/10.1101/2023.12.12.571235v1
  14. Dec 2023
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Using viral sequence diversity to estimate time of HIV infection in infants
    1
    1. scibot 22 Dec 2023
      RRID:SCR_022606

      DOI: 10.1371/journal.ppat.1011861

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10732395/
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The effect of single mutations in Zika virus envelope on escape from broadly neutralizing antibodies
    1
    1. scibot 02 Dec 2023
      RRID:SCR_022606

      DOI: 10.1128/jvi.01414-23

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10688354/
  17. Nov 2023
  18. www.biorxiv.org www.biorxiv.org
    Full-spike deep mutational scanning helps predict the evolutionary success of SARS-CoV-2 clades
    1
    1. scibot 18 Nov 2023
      RRID:SCR_022606

      DOI: 10.1101/2023.11.13.566961

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    biorxiv.org/content/10.1101/2023.11.13.566961v1
  19. Oct 2023
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single B cell transcriptomics identifies multiple isotypes of broadly neutralizing antibodies against flaviviruses
    1
    1. scibot 21 Oct 2023
      RRID:SCR_022606

      DOI: 10.1371/journal.ppat.1011722

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10586629/
  21. www.biorxiv.org www.biorxiv.org
    The effect of single mutations in Zika virus envelope on escape from broadly neutralizing antibodies
    1
    1. scibot 14 Oct 2023
      RRID:SCR_022606

      DOI: 10.1101/2023.09.13.557606

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    biorxiv.org/content/10.1101/2023.09.13.557606v1
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A CRISPR Screen of HIV Dependency Factors Reveals That CCNT1 Is Non-Essential in T Cells but Required for HIV-1 Reactivation from Latency
    1
    1. scibot 06 Oct 2023
      RRID:SCR_022606

      DOI: 10.3390/v15091863

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10535513/
  23. Sep 2023
  24. journals.plos.org journals.plos.org
    The transcription factor DUX4 orchestrates translational reprogramming by broadly suppressing translation efficiency and promoting expression of DUX4-induced mRNAs
    1
    1. scibot 30 Sep 2023
      RRID:SCR_022606

      DOI: 10.1371/journal.pbio.3002317

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    journals.plos.org/plosbiology/article
  25. Aug 2023
  26. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Protocol optimization of a targeted sequencing panel for genomic profiling of bronchoalveolar lavage fluid in lung cancer
    1
    1. scibot 29 Aug 2023
      RRID:SCR_022606

      DOI: 10.1002/cam4.6380

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    onlinelibrary.wiley.com/doi/10.1002/cam4.6380
  27. link.springer.com link.springer.com
    Primate TRIM34 is a broadly-acting, TRIM5-dependent lentiviral restriction factor
    1
    1. scibot 23 Aug 2023
      RRID:SCR_022606

      DOI: 10.1186/s12977-023-00629-4

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    link.springer.com/article/10.1186/s12977-023-00629-4
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A CRISPR screen of HIV dependency factors reveals CCNT1 is non-essential in T cells but required for HIV-1 reactivation from latency
    1
    1. scibot 12 Aug 2023
      RRID:SCR_022606

      DOI: 10.1101/2023.07.28.551016

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

      Curator: @scibot

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    ncbi.nlm.nih.gov/pmc/articles/PMC10402164/
  29. www.biorxiv.org www.biorxiv.org
    Jointly modeling deep mutational scans identifies shifted mutational effects among SARS-CoV-2 spike homologs
    1
    1. scibot 12 Aug 2023
      RRID:SCR_022606

      DOI: 10.1101/2023.07.31.551037

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    biorxiv.org/content/10.1101/2023.07.31.551037v1
  30. www.biorxiv.org www.biorxiv.org
    TRAFfic signals: High-throughput CAR discovery in NK cells reveals novel TRAF-binding endodomains that drive enhanced persistence and cytotoxicity
    1
    1. scibot 12 Aug 2023
      RRID:SCR_022606

      DOI: 10.1101/2023.08.02.551530

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    biorxiv.org/content/10.1101/2023.08.02.551530v1
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Point Mutation at C151 of Keap1 of Mice Abrogates NRF2 Signaling, Cytoprotection in Vitro, and Hepatoprotection in Vivo by Bardoxolone Methyl (CDDO-Me)
    1
    1. scibot 02 Aug 2023
      RRID:SCR_022606

      DOI: 10.1124/molpharm.123.000671

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10353147/
  32. Jul 2023
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    APOBEC3 activity promotes the survival and evolution of drug-tolerant persister cells during acquired resistance to EGFR inhibitors in lung cancer
    1
    1. scibot 25 Jul 2023
      RRID:SCR_022606

      DOI: 10.1101/2023.07.02.547443

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10350004/
  34. www.biorxiv.org www.biorxiv.org
    Atg8-LC3 controls systemic nutrient surplus signaling from flies to humans.
    1
    1. scibot 13 Jul 2023
      RRID:SCR_022606

      DOI: 10.1101/2023.05.31.543119

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    biorxiv.org/content/10.1101/2023.05.31.543119v1
  35. Jun 2023
  36. www.sciencedirect.com www.sciencedirect.com
    Mapping the neutralizing specificity of human anti-HIV serum by deep mutational scanning
    1
    1. scibot 22 Jun 2023
      RRID:SCR_022606

      DOI: 10.1016/j.chom.2023.05.025

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    sciencedirect.com/science/article/pii/S1931312823002184
  37. Apr 2023
  38. www.biorxiv.org www.biorxiv.org
    Mapping the neutralizing specificity of human anti-HIV serum by deep mutational scanning
    1
    1. scibot 20 Apr 2023
      RRID:SCR_022606

      DOI: 10.1101/2023.03.23.533993

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    biorxiv.org/content/10.1101/2023.03.23.533993v1
  39. www.biorxiv.org www.biorxiv.org
    Single B cell transcriptomics identifies multiple isotypes of broadly neutralizing antibodies against flaviviruses
    1
    1. scibot 20 Apr 2023
      RRID:SCR_022606

      DOI: 10.1101/2023.04.09.536175

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    biorxiv.org/content/10.1101/2023.04.09.536175v1
  40. Mar 2023
  41. www.biorxiv.org www.biorxiv.org
    Primate TRIM34 is a broadly-acting, TRIM5-dependent lentiviral restriction factor
    1
    1. scibot 31 Mar 2023
      RRID:SCR_022606

      DOI: 10.1101/2023.03.24.534139

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    biorxiv.org/content/10.1101/2023.03.24.534139v1
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Virus-Packageable CRISPR System Identifies Host Dependency Factors Co-Opted by Multiple HIV-1 Strains
    1
    1. scibot 04 Mar 2023
      RRID:SCR_022606

      DOI: 10.1128/mbio.00009-23

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9973025/
  43. Feb 2023
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A modular CRISPR screen identifies individual and combination pathways contributing to HIV-1 latency
    1
    1. scibot 11 Feb 2023
      RRID:SCR_022606

      DOI: 10.1371/journal.ppat.1011101

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9907829/
  45. journals.asm.org journals.asm.org
    A Virus-Packageable CRISPR System Identifies Host Dependency Factors Co-Opted by Multiple HIV-1 Strains
    1
    1. scibot 09 Feb 2023
      RRID:SCR_022606

      DOI: 10.1128/mbio.00009-23

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    journals.asm.org/doi/10.1128/mbio.00009-23
  46. Jan 2023
  47. www.biorxiv.org www.biorxiv.org
    Somatic mutation but not aneuploidy differentiates lung cancer in never-smokers and smokers
    1
    1. scibot 12 Jan 2023
      RRID:SCR_022606

      DOI: 10.1101/2023.01.05.522947

      Resource: Fred Hutchinson Cancer Center Genomics and Bioinformatics Core Facility (RRID:SCR_022606)

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    biorxiv.org/content/10.1101/2023.01.05.522947v1