10 Matching Annotations
  1. Oct 2026
    1. It has been demonstrated previously that localization of cone α-transducin is perturbed in Gucy2e–/– cone photoreceptors, with α-transducin localized to the inner segments and synaptic regions of cones (Coleman and Semple-Rowland, 2005). Our results are consistent with these findings; we observed weak and mislocalized cone α-transducin staining in untreated Gucy2e–/– eyes. In the treated eyes, however, immunohistochemical staining revealed increased levels of cone α-transducin, correctly localized to the cone outer segments (Fig. 3a). It has also been reported previously that localization of cone arrestin is perturbed in Gucy2e–/– cone photoreceptors (Coleman and Semple-Rowland, 2005), and that cone arrestin remains in the outer segments and synaptic terminals regardless of light conditions. However, we did not observe a major difference in cone arrestin staining in C57BL/6J wild-type and untreated Gucy2e–/– mice (Fig. 3b). Although there was faint immunostaining throughout Gucy2e–/– cones that was not seen in wild-type cones, in light-adapted animals the bulk of the signal, as in wild-type animals, was present in cone outer segments and synaptic terminals. Furthermore, after dark adaptation, arrestin translocated normally throughout cone photoreceptor cells. The localization and translocation of cone arrestin was not altered after administration of vector (Fig. 3b).

      ExperimentName: Rescue of mouse Gucy2e homozygous knockout model by AAV-borne human GUCY2D transgene

      NonHumanModel: Mus musculus

      GeneAlteration: The mouse Gucy2e gene was disrupted by the introduction of a neomycin-resistance gene cassette into exon 5, resulting in a truncated protein lacking its transmembrane domain (PMID: 10407028). The effects of this knockout were studied in the homozygous state.

      RescueVariant: Rescue was performed with the wild-type human GUCY2D and mouse Gucy2e genes but not with a patient-derived variant.

      RescuePhenotype: HP:0030465 (Undetectable light-adapted electroretinogram), HP:0030483 (Reduced amplitude of dark-adapted bright flash electroretinogram a-wave), HP:0030469 (Abnormal dark-adapted electroretinogram), HP:0000479 (Abnormal retinal morphology), HP:0008020 (Cone dystrophy)

      RescueMethod: Human GUCY2D or mouse Gucy2e was cloned into an overexpression construct under the control of the human rhodopsin kinase promoter and packaged into adeno-associated (AAV2/8) viral particles for 2 subretinal injections on postnatal day 10. Efficacy was measured by ERG recordings every two weeks.

      RescueEvidence: Treatment with the human GUCY2D gene restored proper localization of alpha-transducin (Figs. 3a-3b), which was first reported by PMID: 15623748 to be abnormal in this model. Treatment corrected the defect in scotopic b-wave amplitude by 65-100% (Figs. 4a-4b). Cone amplitude was corrected from 20% of wild-type to 65% of wild-type (Fig. 4c). Similar results were obtained with the mouse Gucy2e transgene (Fig. 5). Head-tracking behavior (measure of visual acuity and contrast sensitivity) was fully corrected by treatment (Fig. 6). Moderate cone preservation was also demonstrated by normalization of alpha-transducin staining, showing a 20% increase in cone numbers relative to the untreated control (Fig. 7r).

      ModelVariant: The mouse model disrupts the expression of the endogenous GC1 protein product but does not feature knock-in of a variant from a human patient.

    1. In our Kcnj13W53X/+ΔR mice, we used ABE8e mRNA, sgRNA packaged in SNC-PEG-ATRA, and administered subretinally to edit the mutant allele. Full-field ERG measurements were performed at weeks 2, 6, and 10 to monitor longitudinal rescue in phenotype (Figure 6F). At week 10, multifocal ERG (mfERG) was performed on injected eyes to determine whether functional recovery was regionalized based on localized delivery of the base-editor complex. For the control group, Kcnj13W53X/+ΔR was injected with a base editor and a nontargeting guide. The nontargeted guide–injected mice exhibited a progressive decrease in c wave amplitude as well as depressed mfERG waveforms in almost the entire retina. On the other hand, the base-edited eyes showed an increase in the c wave amplitude at all measured time points (Figure 6, G–J). mfERG showed localized waveforms (Figure 6H and Supplemental Figure 11A) that perhaps correlated with the site of injection (Figure 6C). On the second week following the injection, the normalized c wave amplitude (to that before the therapy) in eyes receiving the nontargeted guide was 0.8 ± 0.1, practically indistinguishable to that of the eyes injected with the targeted guide, 0.9 ± 0.2 (P = 0.9). At 10 weeks after injection, the c wave was reduced (0.7 ± 0.1) for the nontargeted retina compared with an increasing trend (1.6 ± 0.1, P = 0.01) (Figure 6K) for the targeted guide–delivered retina. This increase of 55% in amplitude and intact retinal structure, as evaluated by OCT (Figure 6, H and J), demonstrates that inherited retinal channelopathies could be mitigated using base editors. As a further preclinical validation, we determined whether the SNC used to deliver the base editor triggers an immune response. The RPE cells in culture were transduced with either lentivirus, AAV7m8, or AAV5 or were incubated with SNC. Expression of inflammatory cytokines, including IFN-γ, IL-1α, IL-1β, IL-6, CD-8, and Iba1, was assessed by quantitative PCR (qPCR). CD8 and Iba1 showed increased expression in virally transduced RPE cells, but not in cells exposed to SNCs (Supplemental Figure 11B).

      ExperimentName: CRISPR/Cas9-based rescue of patient variant in the mouse RPE

      RescueModel: Mus musculus

      GeneAlteration: The Kcnj13W53X/+ΔR model has been generated from Kcnj13W53X/+ mice by retinal pigment epithelium-specific introduction of the variant encoding the p.Trp53Ter nonsense variant.

      RescueVariant: Rescue was performed by editing the variant to restore wild-type KCNJ13, not by introducing an additional human variant.

      RescuePhenotype: The rescued phenotypes are full-field electroretinogram responses measured at week 10 post-injection and retinal thickness by optical coherence tomography.

      RescueMethod: This rescue model has subretinally injected sgRNA to edit the W53X allele and restore the wild-type by CRISPR/Cas9 base editing.

      RescueEvidence: The ERG c-wave from the RPE layer shows 55% higher amplitude for the edited/targeted retina relative to the non-targeted control (Figures 6J and 6K) and is accompanied by intact retinal structure by OCT (Figures 6H and 6I).

      ModelVariant: NM_002242.4(KCNJ13):c.158G>A (p.Trp53Ter), ClinVarID: 224857

    1. Figure 5.

      RescueModel Mus Musculus

      GeneAlteration knock-in strain was generated by homologous recombination of the targeting vector with 129Sv/J embryonic stem cells genome. A 450-bp DNA segment encompassing 5′ UTR and exon 1 of the CASQ2 was used to screen RPCI-21 PAC mouse genomic library. Positive clones were sequenced to define the structure of an 8.5-Kb region encompassing promoter, exon 1, and part of intron 1 of mouse CASQ2. This region was cloned in 3 parts and assembled into the targeting vector pFlrt (supplemental Figure I). The linearized targeting vector was electroporated into 129Sv/J embryonic stem cells. The clone selected with G418 and gancyclovir was injected into C57BL/6NCrL blastocyts and transferred to pseudopregnant CD-1 females. Genotype was determined by sequencing of DNA extracted from tail biopsy specimens (DNasy Tissue Kit, Qiagen).

      RescueVariant murine cardiac CASQ2 , WT?

      RescuePhenotype HP:0004756

      RescueMethod The AAV recombinant virus (AAV9-CASQ2) and the empty virus (AAV9-GFP) were produced by the AAV Vector Core of the Telethon Institute of Genetics and Medicine (Napoli, Italy) according to a previously published protocol.18 The viral titer was 2.6×1012 genome copies per milliliter for AAV9-CASQ2 and 4.3×1012 genome copies per milliliter for AAV9-GFP. The infection was performed by intraperitoneal injection in pups on postnatal day 3 (100 μL), which recovered until euthanasia was performed at 6, 9, or 12 months. Three-month-old mice were anesthetized with Avertin (0.025 mg/kg), and viral particles (200 μL) were injected into the tail vein and studied 2 months later. ECG recordings in mice of either sex were performed with implantable loop recorders (Data Sciences International).

      RescueEvidence (Fig.5&8) Epinephrine/Isoprenol administration had lead to diminished incidence of VT in CASQ infected mice vs R33Q mice.

      ModelVariant NM_001232.3(CASQ2):c.97C>T (p.Arg33Ter), ClinVar: 41043

    1. The protein lysate of mIMCD3-Ift140−/− cells validated the absence of IFT140 protein in these cells (Fig. 3a). Upon transfection with wild-type or p.Tyr923Asp mutant IFT140, a partial rescue of the IFT140 protein level was detected. There was no IFT140 signal detected in the protein lysate of mIMCD3-Ift140−/− transfected with p.Tyr332Valfs*18. To exclude that the observed ciliary tip accumulation of IFT88 in patient-derived URECs was due to other variants, we assessed the ability of patient mutant IFT140 constructs to rescue ciliogenesis and determined the localization of IFT88. Ciliogenesis was restored in 11% of the analyzed cells upon rescue with wild-type IFT140. Both mutants, p.Tyr923Asp and p.Tyr332Valfs*18, rescued ciliogenesis in 6% of the cells (Fig. 3b). Defects in retrograde IFT were visualized by ciliary tip accumulation of IFT-B protein IFT88. Cilia rescued with the p.Tyr923Asp mutant IFT140 showed IFT88 ciliary tip accumulation in 50%, which is significantly more than seen in ciliated cells rescued with wild-type IFT140 (23% tip accumulation). A similar phenotype was seen in ciliated cells transfected with p.Tyr332Valfs*18 IFT140 (56% tip accumulation).

      ExperimentName: IFT140 variant rescue in Ift140 knockout cells

      RescueCellLine: Mouse Inner Medullary Collecting Duct 3 (mIMCD3) cells

      RescueCellEFO: EFO:0002887 (mouse cell line), EFO:0001643 (kidney-derived cell line)

      GeneAlteration: The cell line was subjected to CRISPR-based knockout of endogenous IFT140 (targeting exon 8).

      RescueCellPhenotype: Ift140 knockout cells exhibited a complete inability to form cilia relative to the control rescued by overexpression of wild-type Ift140 (Figure 3b) and aberrant accumulation of the IFT-B protein IFT88 at the ciliary tip (Figure 3d).

      RescueMethod: Transient transfection and over-expression of wild-type or variant IFT140 was used to rescue the cell phenotypes.

      RescueEvidence: Wild-type IFT140 restored ciliogenesis in 11% of cells, while either variant restored ciliogenesis to 6%, despite the surprising continued absence of the frameshift variant at the protein level (Figure 3b). Wild-type IFT140 reduced the proportion of cells exhibiting IFT88 accumulation at the ciliary tip to 23%, while either variant partially reduced IFT88 localization to the ciliary tip to 50% or 56% (Figure 3d).

      RescueCellVariant: The variants used for the rescue experiment were NM_014714.3(IFT140):c.992_993dup (p.Tyr332Valfs*18) (cannot be registered manually) and NM_014714.3:c.2767T>G (p.Tyr923Asp) (CA394227092).

    1. Two transgenes were used in RPGR mutant (XLPRA2) dogs under the control of the GRK1 promoter. First was the previously developed stabilized human RPGR (hRPGRstb). Second was a new full-length stabilized and codon-optimized human RPGR (hRPGRco). Long-term (>2 years) studies with an AAV2/5 vector carrying hRPGRstb under control of the GRK1 promoter showed rescue of rods and cones from degeneration and retention of vision. Shorter term (3 months) studies demonstrated comparable preservation of photoreceptors in canine eyes treated with an AAV2/5 vector carrying either transgene under the control of the GRK1 promoter.

      Dog rescue RPGR.

    1. To determine if postsynaptic expression of nyctalopin is necessary and sufficient to rescue the nob phenotype, we constructed transgenic mice that expressed an EYFP-nyctalopin fusion protein on the dendritic tips of the DBCs. Immunohistochemical and ultrastructural studies verified that fusion protein expression was limited to the DBC dendritic tips. Fusion gene expression in nob mice restored normal outer and inner visual function as determined by the electroretinogram and RGC spontaneous and evoked responses. Together, our data show that nyctalopin expression on DBC dendrites is required for normal function of the murine retina.

      ExperimentName: Rescue of Nyx loss-of-function mouse by transgene expression in depolarizing bipolar cells of the retina

      RescueModel: Mus musculus

      GeneAlteration: This naturally occurring model, previously known to exhibit the absence of b-wave in ERG recordings, harbors an 85-bp deletion in the final exon of the Nyx gene that shifts the frame and replaces the C-terminal 61% of the protein product with 170 novel amino acids. The predicted effect is loss-of-function.

      RescueVariant: Rescue was performed with a wild-type Nyx transgene, rather than a variant.

      RescuePhenotype: HP:0007984 (Electronegative electroretinogram), HP:0000649 (Abnormality of visual evoked potentials), HP:0007663 (Reduced visual acuity)

      RescueMethod: An EYFP-tagged mouse Nyx gene was placed under the control of the mouse GABAcp1 promoter for tissue-specific expression in bipolar cells of the retina, including rod and cone depolarizing and hyperpolarizing bipolar cells. The transgene was introduced by pronuclear injection to generate transgenic lines, then crossed to homozygous Nyx mice to yield transgenic male offspring with Nyx disruption.

      RescueEvidence: The EYFP-Nyx transgene restores both the ERG b-wave (Figure 5B) and the spontaneous and light-evoked responses of retinal ganglion cells (Figure 6) in Nyx-deficient mice.

      ModelVariant: The model is naturally occurring, and so the affected animals harbor a variant that does not have an exact human patient equivalent.

    1. The ability of Nr2e3 to rescue retinal degeneration before disease onset was tested by subretinal delivery of AAV8-Nr2e3 in five mouse models of RP. All models except rd1 were injected at P0 and evaluated at 3–4 months of age. rd1 animals were injected at P0 and evaluated at 1 month of age due to their accelerated rate of disease progression. Although not all models have a clinical phenotype, considerable improvements were observed in the fundus of RhoP23H, rd16, and rd7 mice (Fig. 3). Interestingly, we observed the rd16 mice have a red fundus with increased and pronounced vessels (not previously reported). While no vascular leakage has been observed in rd16 mice when examined by fluorescein angiography (our unpublished data), the fundus observation resolves with Nr2e3 administration. Improvement was observed in the rd7 phenotype, with reduction of retinal spots in AAV8-Nr2e3 treated eyes compared with untreated eyes at 3 months post injection.

      ExperimentName: AAV8-Nr2e3 rescue of rd7/rd7 mice

      RescueModel: Mus musculus

      GeneAlteration: Rescue was performed by subretinal injection of AAV8-Nr2e3 (or no treatment) into rd7/rd7 mice with homozygous disruption of endogenous Nr2e3

      RescueVariant: No variant form of Nr2e3 was studied in this rescue experiment.

      RescuePhenotype: The rescued phenotype is retinal spots in the fundus (Figure 3).

      RescueMethod: This rescue model has introduction of the virally packaged mouse wild-type Nr2e3 gene.

      RescueEvidence: Subretinal administration of the gene results in considerable improvement of the retinal spots in the fundus compared with untreated eyes 3 months post-injection (Figure 3).

      ModelVariant: The model harbors homozygous out-of-frame deletion of 380 bp within the coding region of Nr2e3.

    1. One construct was designed to replace the endogenous mouse Opn1mw gene with a human cDNA encoding a normal L cone opsin with the following amino acids at the polymorphic positions encoded by exon 2, 3 and 4: T65, I111, S116, L153, I171, A174, I178, S180, I230, A233, and M236. The modified locus in mice in this study was Opn1lwLIAIS/LIAIS for females or Opn1lwLIAIS/Y for males, but for simplicity, here the locus is referred to as Opn1lwLIAIS. The second construct was designed to create a large deletion within the mouse Opn1sw gene, thereby creating an S-opsin knockout mouse, designated Opn1sw−/−.

      ExperimentName: OPN1LW rescue of mice with Opn1mw and Opn1sw defects

      RescueModel: Mus musculus

      GeneAlteration: Rescue was performed by replacing the endogenous Opn1mw gene with a known benign OPN1LW LIAIS compound variant from unaffected humans, which serves as a wild-type OPN1LW control.

      RescueVariant: Rescue was performed by replacing the endogenous Opn1mw gene with a known benign OPN1LW LIAIS compound variant from unaffected humans, which serves as a wild-type OPN1LW control.

      RescuePhenotype: The rescued phenotypes are cone outer segment length and number.

      RescueMethod: This rescue model has replacement of the mouse Opn1mw gene with a normal variant of human OPN1LW.

      RescueEvidence: Replacement of the mouse Opn1mw gene with a normal variant of human OPN1LW results in a shift in sensitivity to detect red wavelengths (Figure 5) and rescues a defect in outer segment length caused by knockout of both Opn1mw and Opn1sw (Figure 13).

      ModelVariant: The model harbors homozygous deletion of Opn1sw and either intact Opn1mw or replacement of Opn1mw with human OPN1LW.

    1. We performed a trial of retinal gene augmentation in the Pde6a mutant dog using Pde6a delivery by capsid-mutant adeno-associated virus serotype 8, previously shown to have a rapid onset of transgene expression in the canine retina. Subretinal injections were performed in 10 dogs at 29–44 days of age, and electroretinography and vision testing were performed to assess functional outcome. Retinal structure was assessed using color fundus photography, spectral domain optical coherence tomography, and histology. Immunohistochemistry was performed to examine transgene expression and expression of other retinal genes. Treatment resulted in improvement in dim light vision and evidence of rod function on electroretinographic examination. Photoreceptor layer thickness in the treated area was preserved compared with the contralateral control vector treated or uninjected eye. Improved rod and cone photoreceptor survival, rhodopsin localization, cyclic GMP levels and bipolar cell dendrite distribution was observed in treated areas. Some adverse effects including foci of retinal separation, foci of retinal degeneration and rosette formation were identified in both AAV-Pde6a and control vector injected regions.

      ExperimentName: Rescue of Pde6a-mutant Cardigan Welsh Corgi dogs with canine Pde6a

      RescueModel: Canis lupus familiaris

      GeneAlteration: The model harbors a homozygous 1-bp deletion variant at codon 616 that results in a frameshift and a premature stop codon (previously reported in PMID: 10393029 and PMID: 18775863).

      RescueVariant: Rescue was performed with wild-type canine Pde6a delivered by AAV8 and expressed under the CMV-chicken beta-actin promoter, in comparison to a GFP control.

      RescuePhenotype: HP:0030474 (Undetectable dark-adapted electroretinogram), HP:0000505 (Visual impairment), HP:0007843 (Attenuation of retinal blood vessels), HP:0030610 (Photoreceptor outer segment loss on macular OCT)

      RescueMethod: Rescue was performed by subretinal injection of AAV8 particles delivering wild-type canine Pde6a or GFP cDNA (Figures 4, 5, and 6).

      RescueEvidence: Rod ERG response shows improvement from undetectable to detectable following AAV-Pde6a injection (Fig. 1). Visual impairment also improved according to visual navigation ability (Fig. 2). Attenuation of retinal blood vessels was prevented as well (Fig. 3). Photoreceptor outer nuclear layer thickness was preserved (Fig. 4). Finally, treatment promoted rod photoreceptor survival (Fig. 5).

      ModelVariant: The model does not harbor a variant equivalent to one from the human patients, but rather has a naturally occurring frameshift variant disrupting Pde6a leading to full loss-of-function.

    1. Three-week-old C57BL/6JRd9/Boc and Rpgr−/y mice were treated with unilateral (nRd9 = 18, nko = 24) or bilateral (treatment versus sham, nRd9 = 17, nko = 20) injections (1.5 × 109 vg in 1.5 μL). Immunohistochemistry of unfixed cryosections showed that the antibody detecting human RPGR does not cross-react with the orthologous Rpgr in C57BL/6J wild-type mice (Figure 4). More importantly, it demonstrated RPGR transgene expression and co-localization with the ciliary protein Rpgrip1 in the treated eye of C57BL/6JRd9/Boc and Rpgr−/y mice, but not the control eye. In the longitudinal ERG analyses, both animal models of XLRP showed significant rescue of the dominating rod system at 6 months, the last time point studied (Figure 5). Rpgr−/y mice also showed a significant rescue of cone function under light-adapted conditions, whereas the responses in C57BL/6JRd9/Boc mice showed a trend for efficacy, which did not reach the significance level in light-adapted conditions at this time point. Some of the measures at earlier time points also showed significant therapeutic effects or a trend for efficacy again especially at higher stimulus intensities (Figures S9 and S10). It is important to note that ERG responses from treated eyes versus untreated eyes (intra-individual comparison) showed significant rescue with the therapeutic AAV vector in both animal models at 4 and 6 months of age. However, when mice were treated with the therapeutic vector in one eye and the control vector in the other, variability increased as a result of having surgery performed on both sides. This contributed to variability in the ERG signals. Importantly, all responses from the treated eyes were still always greater than those from the control treated eyes. However, the significance threshold was only met in Rpgr−/y mice at 6 months.

      ExperimentName: Rescue of Rpgr-deficient mice with human RPGR

      RescueModel: Mus musculus

      GeneAlteration: The Rpgr−/y mouse model was constructed with targeted hemizygous (male) disruption of the mouse Rpgr gene by insertion of a neomycin resistance cassette to replace exons 4 through 6 and generate a null variant (PMID: 10725384).

      RescueVariant: Rescue was performed with wild-type human RPGR.

      RescuePhenotype: HP:0030612 (Abnormal retinal morphology on macular OCT), partial mislocalization of blue and green cone opsins to the inner segment, reduced rhodopsin content in the outer segment, HP:0000546 (Retinal degeneration), HP:0030609 (Photoreceptor layer loss on macular OCT), HP:0030610 (Photoreceptor outer segment loss on macular OCT), disorganization of disk membranes, normal connecting cilia morphology, HP:0030483 (Reduced amplitude of dark-adapted bright flash electroretinogram a-wave), HP:0008275 (Abnormal light-adapted electroretinogram)

      RescueMethod: Rescue was performed by subretinal injection of AAV8 particles delivering wild-type human RPGR (Figure 5).

      RescueEvidence: ERG analyses show significant rescue of rod function and a rescue of cone function that is trending towards statistical significance (Figures 5B and 5C).

      ModelVariant: The model does not harbor a variant equivalent to one from the human patients, but rather has targeted disruption of Rpgr leading to full loss-of-function.