add data to model fit
where is code to add data to f??
add data to model fit
where is code to add data to f??
plot(nom, cex.var=1, cex.axis=.75, lmgp=.25)
need to adjust ?font size to avoid overprinting labels in the nomogram
Stratify by a key
If these are separate steps, consider numbering them to emphasize that ...
preferred
there's a typo in the example link:
https://https//fharrell.com/post/impactpo
delete leading https://
Fit the semiparametric generalization of the log-normal
log-normal? or log-logistic?
parametric log-logistic
?? section https://hbiostat.org/rmsc/psmcase#sec-psmcase-lognorm-gof refers to log-normal not log-logistic ??
models be computed
insert "to"
models to be computed
fitted log-normal model i
log-normal
and and
delete dup and (unless part of sentence is missing?)
But in a frequentist setting outside of a standard Gaussian linear model, Wald confidence intervals are not ideal.
Elaborate on this!!
may inconsistent
may "be" inconsistent
Steve Simon
Rachel (RMS 2025 attendee) pointed out the new link for Steve Simon:
by ≥5 mmHg
eliminate space between >= and 5
Using Cox survival estimates at 60 Months
CalibratioN ... suggest adding note about when to worry!
"We're going to worry about over-predicting survival when it's high and under-predicting when it's low. Frank Harrell 09:02:47 Uh, and this is the classic kind of regression to the mean. So to really… If you wanted to use this as a prognostic model. Frank Harrell 09:02:55 Predictive model, you probably go back and apply some shrinkage, or really talk to the experts to do more data reduction than I did."
Choosing the Number of Parameters and Fitting the Model
Note Frank says he would not analyze this ds this way now. and there might be an error in the data
?? maybe put a note here for the reader? or maybe link to the video 5-20-2025
bootstrap sample
this is training
(whole) sample (Xorig,Yorig) to get
this is test ?
Test Sample
R^2 X_orig, Beta_boot, Y_orig??
Training Sample
R^2 "boot"?
Original Sample
? R^2 apparent
that
maybe no space before w_i
allows
allow
either
add ":" after either
to make it clearer that the numbered items relate to those variables
somehwat
sp: somewhat
discount
discount??
with
Maybe "with" should be "when"??
as in "adjustments are needed when ..."
rmsb: Bayesian Regression Modeling Strategies Package, Focusing on Semiparametric Univariate and Longitudinal Models
maybe subdivide 6.3 with 6.3.1 rms, 6.3.2 rmsb, and ? 6.3.3 the global options, etc. or maybe include that with 6.3.1?
Main point is the toc for section 6 should show a subsection for rmsb explicitly!
Boostrap
BooTstrap
R-squared achieved in predicting each variable:
maybe offer option to show this with vars ordered by the R^2?
42
why is the number 42 shown separately from the lowest interval and the second lowest?
also, wondering how to see the color associated with each interval? True, I can hover over various colors and figure out that yellow represents the highest interval ...
form
typo: "form" should be "from" (or maybe "using"
have 3 less day
should be "have 1 less day"
binary logistic regression model
what happened to the datamethods discussion for this chapter?
f, height, abdomen
? plot title? Predicted Fat Fraction based on Height and Abdominal Circumference given Age = 43 ??
RStudio Server
your link went to the desktop version.
Here's link to the server version (Yea Posit!) https://posit.co/products/open-source/rstudio-server/
gus06per
Can't find this ?personal communication??: gus06per
PART II
You've referenced Part II twice. I suspect the first reference in this pair should be to Part I : https://doi.org/10.1002/sim.7993
Missing Data' class='pagination-link' href='/rmsc/missing'>
??
second
?insert "ed." or "edition" after "second"
as
typo .. "as" should be "has"
Compute by treatment the mean time unwell
insert ":" Compute by treatment: the mean time unwell
elationship.
In class, Frank says day should be year,not day
transformed
discussion in class very helpful for use of cancore option in transcan
truncate WBC to 40000
Question: ?truncate? how would that var go in the formula? You said the prediction would be flat for wbc > 40000?
Limiting Sample Size
someone in class suggested define effective sample size in glossary!
stepwise analysis
and m is the sample size (number of observations?
Logistic regression
Just to clarify, some ML 'packages' (e.g. AzureML, GoogleML) consider logistic regression to be one of the ML algorithms. FWIW, I've seen (high school) science fair projects use both of those and find that logistic is "the winner" ...
over-simplified
if the cutoff for dichotomizing one variable is unstable, shouldn't be surprised that a tree based on cutoffs by dichotomizing multiple variables is unstable ?
cutpoints Interestingly,
insert period after cutpoints
seems
only appears
effect present,
effect is present
Not forget
or better: Do Not Forget ...
if individual completed dataset analyses are not done (not recommended
?what is not recommended? ?analyses on individual completed datasets?
non-mono-ton-ical-ly
nonmonotonically
look look
duplicated look
wrong
biased
that the difference between the most different treatments is badly biased
trying to understand this: maybe "the difference between the treatments with the greatest difference is badly biased"
disease or no disease when severity of disease is on a continuum
just for readability:
"disease" or "no disease" when severity of disease is actually on a continuum
1276–1296
Pages for Part I are actually 1262--1275
in an object in you want
in an object if you want
Some of othe functions
typo: Some of the functions ...
but for shrinkage
but also allow for shrinkage
add simulated some post data
add some simulated post data
When in increases
When it increases
Best way to make model fit data well is to discard much of the data
Suggested edit to emphasize you don't really suggest this approach?!
"Best way" to make model fit data well is to discard much of the data!!
Change will baseline will
maybe "Change from baseline will"
idea is assume
the idea is to assume
any needed SAP
question: after the plan, or after the pivotal analysis, has been completed?
Above the tendency
*Avoid * the tendency (or "urge"!)