34 Matching Annotations
  1. Apr 2020
    1. When culture changes much more rapidly than the genome can respond, “mismatch” diseases occur.

      We've basically gotten too good at making good things (hyper palatable foods, etc.)

    2. The immune system is based on molecular recognition of commensal and pathogenic microbes.22

      Can we retrain that system to accept beneficial microbes? Say someone has a super human gut that makes them super special- can we retrain other people's guts to accept and propagate that specific set of microbes? We can due vaccines, which train the immune system, but perhaps defense beginning in the gut could be interesting! I would love some other ideas- I know a cursory amount about the topic.

    3. Global spread of humans out of Africa over the last 70 000 years resulted in variations in genome–based disease resistance as new environments and pathogens were encountered.17

      I wonder which specific diseases are caused by climate? What diseases do, say, the Finnish have that a Masai village would never experience? I can think of malaria of course, but what other more subtle pressures exist?

    4. For evolutionary medicine, the causes of disease are more simply conceived.3

      Can a simple approach appropriately describe and communicate all causes of disease?? We shall see!

    1. Another very likely factor, however, was the remote location of this population.

      Are there other examples of geographic buffering as protection against disease? Modern or ancient.

    2. These genomes were then compared to the genomes of individuals who lived in both the lowland and highland areas during prehistoric and modern times,

      Were these genomes previously known? Is there a database of ancient genomes for paleo researchers? That would be interesting to have on hand.

    3. “Looking at the bumps and shapes of a head does not help you understand the true genetic ancestry of a population—we have proved that you can have people who look very different but are closely related.”

      Morphology does not equal specimens being the same. Even in species of lower classification with less variation, we know that is true. With humans, who show incredible variation, this is especially true- pointing out the need for genetic and molecular methods to get to the true basis of relationships between people and people groups.

    4. , quashing a longstanding theory that a group of Paleoamericans existed in North America prior to Native Americans.

      It's interesting how long the native peoples have been around.

    5. By sequencing and analyzing 15 ancient genomes found throughout the Americas—six of which were older than 10,000 years

      I would like to read more about this- what tissue type was it preserved it? Where did they find it?

    1. which an allelethat confers resistance to human diseases (suchas tuberculosis or leprosy

      Genetic editing is an entire can of worms but I wonder if we could work out the ethics and laws and things to gene edit people to be resistant to certain diseases.

    2. Gene flow of multiplerodent species (44,65) and at least one marsupial(66) is facilitated by corridors of natural vegeta-tion within cities.

      I wonder about the differences between cities designated as Tree Cities and those not. (Tree Cities as defined by the Arbor Day Foundation)

    3. and subsequently diverged into aseparate form (C. pipiensf. molestus), which isreproductively isolated from and less geneticallydiverse than surface populations (52).

      Cool- subway mosquitoes. Sounds like a horror movie waiting to happen....

    4. Redfoxes (Vulpes vulpes) recently colonized Zurich,Switzerland, which resulted in lower genetic di-versity in city foxes compared with that in nearbyrural populations (50)

      I wonder how this compares to 'more adaptive' species? There are cities in India and SE Asia with large populations of monkeys- they are very mobile and social. How does their diversity compare?

    5. Urbanization is predicted to strongly influencegenetic drift, which produces stochastic changesin allele frequencies between generations.

      I wonder how lockdown is affecting population flow? There are a lot of pictures going around of different animals walking in cities now- will we be able to see any change?

    6. Many other changesin morphology, behavior, physiology, and geneexpression have been reported in urban popula-tions (26), but the genetic basis of these changeshas often not been established and may often beexplained by phenotypic plasticity, which is aninterestingphenomenoninitsownrightbutbe-yond the scope of this article (14,27).

      Answering my previous thoughts. Great minds think alike......

    7. In this Review, we ask whether urbanizationaffects evolution through a comprehensive reviewof the evidence for evolutionary change in urbanenvironments and the mechanisms that causethese changes.

      This is the hypothesis/purpose statement of sorts but I wonder what the breadth of work is? I feel as if it must be huge! There must be so many different animals and plants to look at LET ALONE animal and plant behavior, interaction with humans, and more.

    8. pplied evolutionary studies couldlead to more effective mitigation of pests anddisease agents.

      I wonder if by understanding this we could do something akin to companion planting. Companion planting places vegetables next to each other that attract beneficial things for the other, or ward off harmful insects from each other. I wonder if we would be able to plant specific trees and flowers that are not only beautiful, but either directly benefit us, or in turn attract animals that reduce pests or eat common disease carrying animals.

    9. how often do native and exotic speciesadapt to the particular environmental challengesfound in cities?

      I wonder if invasive species have an easier time adapting. Certain plants seem less susceptible- certainly they are very hardy and resistant to being killed.

  2. Mar 2020
    1. The first, a loss of “ardour” by the males, is not a very satisfying explanation in the context of our modern understanding of sexual selection.

      Just because you don't like it doesn't mean it might not be good....

    2. Because the ornament is condition dependent, it is always a reliable indicator of genetic quality,

      I believe this goes into a bit of my earlier question. Why do females prefer something that may not make sense? The energetic cost can indicate genetic quality.

    3. . However, under some circumstances, this model results in a self-reinforcing, open-ended process that produces never-ending trait elaboration. Eventually, the process is opposed by natural selection when the ornament becomes so large as to be a major impediment to survival, a point that was actually well appreciated by Darwin (1871).

      Again, male ornamentation goes against natural selection. Why would you want to be flashy when that is an invitation for death?

    4. The higher-quality females are ready to breed before the lower-quality females, and they choose to pair with the higher-quality males (Fig. 9.1C).

      I wonder if within "high quality" females, there is some sort of pecking order based on looks, age, or other traits?

    5. Thus, the difficulty, which partly remains unsolved, is to understand the evolution of female (or male) preferences.

      This seems incredibly hard to answer. Preferences seem more subjective and instinctual than other choices. How can a want be defined? Of course we can look at patterns in the brain and the lineage of the subject. But often the answer to "why do you want that?" is "because".

    6. Darwin’s approach was to contend that it was inconceivable that preferences did not exist and to provide evidence of female preferences in various animal species.

      Darwin's assumption that females have preferences is smart. However female preferences often go against natural selection. Often the traits that are selected for (say, brilliant plumage) have extreme costs- vulnerability to predators, reduced mobility, etc.

    7. In some species, males engage in fierce struggles among one another, and the victors in these contests tend to mate with the receptive females.

      This definitely relates to natural selection, especially in terms of "survival of the fittest". Strong (fit) males pass on their genes to their offspring, and this can act as a pressure to shift the species in one direction or another.

    1. Thesestudiesillustratethepotentialinfluenceofenvironmentalvari-abilityontestosteronelevels,andtheorysuggeststhatenvironmentalfactorscanalterthereliabilityofsexualsignals,promotingorpreventingtheirevolution(see[58,61,62]).

      This study also talks about how the environment can influence traits.

    2. Nevertheless,thepositivelinksbetweenthelevelofsignalexpressionandlongevityorfecundityhasnotdefinitivelybeenestablished,butmostlyinferredfromotherindicatorsofhealthstatus(reviewedin[24,29,30])or,inthecaseoflongevity,deducedfromoverwintersurvivalratesinavianspecies[31–36].

      While high signaling MIGHT be correlated to higher fecundity/longevity, this hasn't been directly supported by other work- only inferred by secondary measures.

    3. Recently,theoxidativestressconcepthasgainedempiricalsupport,andis consideredaubiquitousselectivepressureabletoshapeindividualphenotypesfromconceptiontodeath[14,15].Thus,it hasbeenhypothesizedthatoxidativestresscouldbeanimportantcostofreproductioninfluencingfecundityvs.survivaltrade-off[16–19].Thatcostcouldnotonlybetheconsequenceofincreasingcellmetabolismduringreproduction(butsee[19])butalsoduetoresourceinvestmentsinsexualsignals(e.g.[20])thatwouldthenfavormatingandrepro-ductivesuccess[15].Amongpotentialsignalsinvolvedintheoxidativecostofreproduction,coloredornamentsgeneratedbycarotenoids(manyyellow-to-redtraits)areprobablythebestknowninvertebrates(e.g.[20–22]).

      This details how oxidative stress can be a trade off, with real costs. However, this produces important signals that play into sexual selection, namely the production of red and yellow pigments (carotenoids).

  3. Jan 2020
    1. Such efforts will also include observationaldata provided by the broader public [71].

      The sheer amount of data necessitates more and more citizen science. Not all of the work is skilled or hard, but the high volume of work cannot be finished by a few scientists.

    2. One particularly exciting avenue ofresearch afforded by new genomic tech-nology is the possibility of directly observ-ing the dynamics of evolution

      Have we been able to observe this directly in anything larger than bacteria? Since we can keep long standing accurate records now, I wish I was able to live longer to see and understand it all.

    3. Models of mutation, inheritance, andselection have inspired the development ofcomputational evolutionary algorithmsthat are used to solve complex problemsin many fields [53,54].

      I would love to learn more about the mathematical ways we can analyze huge data sets. From what little I understand many many factors can be analyzed at once for their relationships, helping us understand huge complex systems.

    4. ion of speciesand ecosystems [13,39–42]. Linking spa-tial data on phenotypes, genomes andenvironments in a phylogenetic contextallows us to identify and name Earth’sdiverse life forms. This linkage, in turn,helps to provide the basic units needed toquantify taxonomic diversity and to pursueits conservation.

      I wonder how our classification will change after we genetically identify organisms? Will we discover that many similar LOOKING species are not closely related at all?

    5. Unfortunately, geneticallymodified crops are genetically uniformand so do not represent a long-termsolution against the evolution of eitherherbicide or Bt resistance.

      Monocultures are damaging. They don't have the diversity of a normal ecosystem. They don't give back to the soil properly. And the foods that we grow in monocultures aren't even the best crops we could be growing.