80 Matching Annotations
  1. Jun 2017
    1. The sepsis rate was 1.81 per 1000 pregnant women. Escherichia coli was the predominant pathogen, followed by Group B Streptococcus.

      Rate of organism causing sepsis

    1. Rarely, through infected blood In theory, the virus could be spread through a blood transfusion.  To date, there are no known reports of this happening.

      could happen not likely though

    1. UTIs are caused by microorganisms that typically infect the urinary tract of non-pregnant women, mainly Escherichia coli, Proteus mirabilis, and Klebsiella pneumoniae.

      gram negative causes

    1. GAS,alsoknownasStreptococcuspyogenesEscherichiacoliStaphylococcusaureusStreptococcuspneumoniaemeticillin-resistantS.aureus(MRSA),ClostridiumsepticumandMorganellamorganii.

      major pathogens that cause sepsis

  2. May 2017
    1. Gardnerella vaginalis, Mycoplasma hominis and various anaerobic bacteria including Mobiluncus sp., and Prevotella sp.

      Other probabe causative organism

    2. These are primarily anaerobic bacteria and an organism called Gardnerella vaginalis,

      A possible caustative organism. No one really knows for sure.

    1. Clindamyci

      Alternative treatments if metronidazole does not work. If it comes back despite using clindamycin, use tinidazole.

    2. Metronidazole is the most common antibiotic for BV.

      Most common form of treatment for bacterial vaginitis.

    1. Ingestion of contaminated foods and direct contact

      Mode of transmission

    2. They are responsible for a variety of infections, including bacteremia, pneumonia, intravenous catheter-associated infections, osteomyelitis, endocarditis, and, rarely, endogenous and exogenous endophthalmitis

      Pathogenicity/toxicity

    1. Treatment in severe cases is electrolyte replacement (to provide electrolytes, such as sodium, potassium and chloride ions, lost through vomiting and diarrhoea) and rehydration.

      Treatment option. Antibiotics not recommended unless very young, old, or immunocompromised.

    1. Growth; red slant, yellow butt, gas positive, black butt (H 2 S produced)

      biochemical test result in Triple sugar iron agar.

    1. Infection: occurs when live bacterial cells are ingested. These bacterial cells can then grow in the digestive tract and cause symptoms. An example of a bacterial infection is Salmonella infection.

      It is an infection.

    1. BIOCHEMICAL TESTS

      Biochemical tests we can use.

    2. Bismuth sulfite agar: Salmonellae produce black colonies. Blood Agar: S. typhi and S. paratyphi usually produce non-hemolytic smooth white colonies. MacConkey Agar: Non lactose fermenting smooth colonies i.e. pale colonies Deoxycholate Citrate Agar (DCA): Salmonella appear as pale colonies.

      What salmonella looks like on different media.

    1. Temperature range: 6-46 oC (43-115 oF) Optimum Temperature: 37oC (98.6oF) pH range: 4.1-9.0 Optimum pH: 6.5 - 7.5

      Growth conditions

    1. Salmonella Enteritidis — the most common Salmonella serotype — accounted for 36 percent of infections resistant to nalidixic acid (resistance to nalidixic acid relates to decreased susceptibility to ciprofloxacin, a widely used fluoroquinolone drug).

      Antiobiotic resistence of salmonella.

    1. binds to the wall of the intestine, and through some special proteins that it makes in response to the particular conditions in the intestine it actually penetrates the barrier between us and the outside. Once it has gained access to our insides, it is taken to the liver or spleen.

      A kind of vague mechanism of attachment and virulence.

    1. Susceptible to chloramphenicol, ciproflaxin, amoxicillin, co-trimoxazole, trimethprim-sulfonamid, cephalosporins and norfloxacin

      Treatment for the bacteria. It does not mention if it is first line or not.

    1. The oxidase test is used to identify bacteria that produce cytochrome c oxidase, an enzyme of the bacterial electron transport chain.

      The oxidase test used to identify bacteria.

    1. The IgA protease, showing its teeth in red!An Arms RaceSome bacteria have developed weapons that can cut our antibodies into small pieces so that they become unable to stick the invading bacteria into clumps. These anti-antibodies are called IgA proteases and are produced inside bacteria like the ones that cause meningitis and gonorrhoea

      Function of IgA protease which is to prevent antibodies from detecting invading pathogens.

    1. By blocking this protein enzyme it stops the release of viruses from the infected host cell and prevents new host cells from being infected.

      Neuraminidase helps to release viruses produced in the host cell.

    1. Cephalosporins are bactericidal (kill bacteria) and work in a similar way to penicillins. They bind to and block the activity of enzymes responsible for making peptidoglycan, an important component of the bacterial cell wall. They are called broad-spectrum antibiotics because they are effective against a wide range of bacteria.

      Mechanism and also it's a broad spectrum antibiotic.

    1. The third generation cephalosporins have a marked activity against gram-negative bacteria due to enhanced beta-lactamase stability and the ability to penetrate the gram-negative cell wall. They have more favorable pharmacologic properties than previous generations.

      First line antibiotics

    1. Haemophilus influenzae type b bacteria can’t survive on surfaces or in the environment. The bacterium’s only known reservoir is humans, who may carry it without becoming ill.

      Where is it normally found and the way it can be transmitted

    1. Biochemical Tests

      Biochemical tests we can use given that they are available to us to use.

    2. On Blood Agar: translucent, low, convex or flat pin point colonies, Satellitism. On Chocolate Agar: Grayish, Transparent, smooth, low, convex or flat with a slightly splayed out, entire edge, mucoid, pale

      Laboratory setting to culture the bacteria.

    3. Slender, short, gram negative rods or coccobacillus 3-0.5 um X 0.5-1 um with rounded ends.

      More cell morphology. Under a microscope, look for a rod with rounded ends. No flagella.

    1. Laboratory testing Gram staining of body fluids from various sites of infection Bacterial culture (blood, other body fluids): The most confirmatory method of establishing the diagnosis; slide agglutination with type-specific antisera is used for serotyping H influenzae Immunologic studies: Detection of the polyribosyl ribitol phosphate (PRP) polysaccharide capsule via countercurrent immunoelectrophoresis, latex particle agglutination, co-agglutination, and enzyme-linked immunosorbent assay; important adjuncts to culturing for rapid diagnosis Cerebrospinal fluid (CSF) studies (eg, Gram stain, culture, glucose/protein levels) Blood cell counts: Assessment for anemia, leukocytosis, thrombocytosis, and/or thrombocytopenia Acute phase reactants: Characteristic elevated erythrocyte sedimentation rates (ESRs) and C-reactive protein (CRP) levels in patients with septic arthritis

      Laboratory tests that we can use given that they are available for us to use.

    2. Haemophilus influenzae is a small (1 µm × 0.3 µm), pleomorphic, gram-negative coccobacillus.

      Cell morphology.

    1. blood or body fluids of a person who is sick with or has died from Ebola, coming in contact with contaminated objects like needles and touching infected animals, their blood or other body fluids, or bush meat.

      Modes of transmission

    2. Regarding the current EBOV outbreak, it is hypothesized that the index case most likely originated via animal — human contact (e.g., ingestion of undercooked ‘bush meat’, animal bite, or inadvertent contact with body fluids or blood from an animal)

      Mode of transmission: direct contact. Entry: ingestion or other entry into body. Host: human

    1. Amoxicillin acts by inhibiting bacterial cell wall synthesis. Lack of bacterial cell wall results in death due to lysis of bacteria. So amoxicillin is useful only for actively growing and cell wall synthesizing bacteria.

      Amoxcillin's mechanism

    1. Metronidazole is reduced to disrupt energy metabolism of anaerobes by hindering the replication, transcription and repair process of DNA results in cell death. Presence of oxygen prevents reduction of metronidazole and so reduces its cytotoxicity.

      Mechanism of metronidazole.

    1. collagenase, neuraminidase, deoxyribonuclease, deoxyribonuclease [DNase], heparinase, and proteinases)

      The bacteria can produce this to destroy surrounding tissue

    1. rare emergence of penicillin-resistant strains with β-lactamase activity

      resistance to antibiotics

    2. penicillins remain the treatment of choice in most cases of LS, cephalosporins (such as cefoxitin and cefotetan), metronidazole, or clindamycin monotherapy can sometimes be used as first-line drugs

      treatment

    3. Fusobacterium is ubiquitous in the normal flora of the oropharyngeal, gastrointestinal, and genitourinary tracts of healthy humans.

      It's usually around in the human body.

    4. Additional physical findings included a temperature of 38.6°C,

      Fevers can present over time.

    5. chills and sweats

      A symptom caused by the bacteria.

    1. -/- Other Enzymes: Esculinase -, lipase -, Tryptophanase + (= indole +).

      biochemical tests

    2. Smells like rancid butter (or boiled cabbage).

      something to consider

    1. RECOMMENDED MEDIA For culture: Brain Heart Infusion (BHI) Agar, Chocolate Agar, Brucella with H & K Agar, Cooked Meat Medium, Thioglycollate Broth with Supplements, and complex media containing peptone promotes optimum growth. For selective isolation: LKV Agar or BBE Agar. For maintenance: Cooked Meat Medium, Thioglycollate Broth with Supplements, Brucella Agar with H & K, or Brain Heart Infusion (BHI) Agar. Skim Milk Media may be used for long-term storage at -70 degrees C. INCUBATION Temperature: 35 degrees C. Time: 48 hours. Atmosphere: Anaerobic with 5% CO 2 . pH: Near 7.

      How to culture the bacteria

    2. Catalase-variable. Lipase-negative. Indole-variable. Esculin-hydrolysis-negative. Mannose, Lactose, Fructose, and Glucose production from fermentation positive for F. mortiferum . Mannose production from fermentation positive for F. varium . Mannose, Lactose, Fructose, and Glucose production from fermentation negative for F. necrophorum and F. nucleatum . Metronidazole-sensitive.

      biochemical tests

    1. 250 to 500 mg orally 3 times a day for 7 to 10 days; alternatively, 500 to 875 mg orally twice a day may be administered

      information on how long antibiotics are generally prescribed to patients.

  3. Apr 2017
    1. Vancomycin resistance among enterococci is attributed to change in the d-alanyl-d-alanine portion of peptide precursor units, transmitted as Van genes, thus rendering it incapable of inhibiting peptidoglycan polymerase and transpeptidation reactions.

      Mechanism bacteria use to resist vancomycin.

    2. Vancomycin is a tricyclic glycopeptide (Figure 1) that consists of seven membered peptide chains forming the tricyclic structure and attached disaccharide composed of vancosamine and glucose.

      The structure could be imporant in how it is able to treat bacteria.

    1. whereas Streptococcus and Enterococcus spp. are catalase negative.

      Testing results

    2. whereas Streptococcus species and many other organisms are inhibited by high concentrations of NaCl.
    1. The attachment of S. pyogenes to the pharyngeal and skin epithelial cell surfaces represents a critical first step in establishing such infections.

      Point of infection, attachment point

    2. human infections that involve the upper respiratory tract and skin, including acute pharyngitis and impetigo.

      generally targets the respiratory tract and skin. note this for the case. Patient's point of entry was through a skin break.

    1. Occasionally, however, these bacteria can cause much more severe and even life threatening diseases such as necrotizing fasciitis (occasionally described as "the flesh-eating bacteria") and streptococcal toxic shock syndrome (STSS).

      Again, group A can cause the symptoms seen in the patient.

    1. The skin may be warm with red or purplish areas of swelling that spread rapidly. There may be ulcers, blisters, or black spots on the skin.

      symptoms

    1. Presumptive identification of a strain as a group A streptococcus can also be made on the basis of production of the enzyme L-pyrrolidonyl-beta-naphthylamide (PYRase). Among the beta-hemolytic streptococci isolated from throat culture, only group A isolates produce PYRase, which can be identified on the basis of the characteristic color change (red) after inoculation of a disk on an agar plate followed by overnight incubation.

      Defining feature

    2. group A organisms can be identified more cost effectively by numerous latex agglutination, coagglutination, or enzyme immunoassay procedures.

      Identification methods

    3. n addition, infection with S pyogenes has reemerged as an important cause of toxic shock syndrome (TSS) and of life-threatening skin and soft-tissue infections, especially necrotizing fasciitis

      possible cause for the patient's symptoms

    1. penicillin

      Method of treatment

    2. suppurative complications such as pharyngitis, impetigo, and non-suppurative immune syndromes such as acute rheumatic fever, rheumatic heart disease, and acute post-streptococcal glomerulonephritis.

      Complications as a result of contractions of a group A.

    1. General symptoms of brucellosis are often vague and similar to the flu. They may include: Fever (the most common symptom, with high "spikes" that usually occur in the afternoon) Back pain Body-wide aches and pains Poor appetite and weight loss Headache Night sweats Weakness Abdominal pain Cough

      Do you have any flu-like symptoms and how bad have those symptoms been? Have you had vomiting or diarrhea?

    1. Bacteria can also enter wounds in the skin/mucous membranes through contact with infected animals.

      Do you work in a slaughterhouse, meat-packing facility, or a veterinarian and could have been exposed to an infected animal?

    2. Breathing in the bacteria that causes brucellosis may also lead to infection. This risk is generally greater for people in laboratories that work with the bacteria.

      Do you work in a laboratory with this bacteria?

    1. has the highest age/sex-related incidence in males in their mid-20s.

      Are you a male in the mid-20s or from 13-40 years of age?

    2. B abortus and B suis species

      Two species exist.

    1. Many scientists and public health officials are loath to identify those patients and avoid the term "patient zero" altogether,

      It is interesting that though scientists and PH officials avoid "patient zero", the term still exists and is still used.