Three (3)patients received a total skin graft. The sample wastaken from the anterior side of the wrist in 2 cases.
only 3 pts received a total skin graft using anterior side of the wrist in 2/3 cases
Three (3)patients received a total skin graft. The sample wastaken from the anterior side of the wrist in 2 cases.
only 3 pts received a total skin graft using anterior side of the wrist in 2/3 cases
The operated area is covered with fat and wetdressing. In any case, dry dressing is never optedfor. T
they used wet bulky dressing with weekly dressing change. the dressing is reinforced by an elastoplast, attached to the forearm
The omegaflap is marked on the dorsal surface of the finger.Its base corresponds to the metacarpal heads andits vertex reaches the proximal interphalangealjoint level. On the palmar surface, incisions aremade to form an anchor that starts at
procedures description
e proximalinterphalangeal joint and descends few millimetersbelow the level of the desired web.
making the incision of the dorsal omega flap
commissural dorsal omega flap, with or withoutskin graft were all included in the study.
inclusion criteria: commissural dorsal omega flap, with or without skin graft were all included in the study.
The aim of this work is to report the different typesof congenital syndactylies and the most frequentsyndromic forms, the application of commissural
3 aims of the paper, soecfic to just one technique
If a cell in the test dataset is confidently assigned to a particular label, we would expect it to have strong expression of that label’s markers
a low expression gene could be a marker gene too? like annegative marker gene
ing log-normalized expressio
can you explain if the log-transformation and normalization are 2 different steps here or are they the same step
discusssed here and in Section 2.3.
??
pairwise Wilcoxon rank sum tests
??
sum(width(mm.exons)
??
mart-seq2 test datasets against the celldex references
??
actual.hsc <- pred$labels[sce$protocol=="sorted hematopoietic stem cells" & sce$sample!="JC4"] head(sort(table(actual.hsc), decreasing=TRUE))
??
f we restrict our analysis to the sorted HSCs (obviously) and remove one low-quality batch (see the analysis here for the rationale) we can see that the
??
Markers
how did you pick these gene markers? what prompted you to look into these?
ng a lower resolution threshold
how did you change the threshold
patchwork characteristics
patchwork characteristics ?
ouvain-based cluster analysis
ouvain-based cluster analysis?
lly aligned
aligned the target cells with human transcriptome?
equence to depths
equence to depths?
onocle 3
monocle 3?
l CytoTRACE
cytotrace?
50 most highly ranked genes from this analysis for each cluster were usedto perform gene set enrichment analysis in a programmatic fashion using EnrichR
how did you get the 50 most highly ranked genes?
predictive power to each gene
do i have to assign predictive power of gene?
on (UMAP) analysis over the first 15 principal components
UMAP analysis ?
UMI counts w
the concept of UMI counts and log transformation
emia tim
there is an association between ischemia time and diabetes?
cDNA library concentrations were 858.7 and 364.7 pg/μL
cDNA library concentration?
incurfinancial catastrophe as a result of seeking care
incur catastrophic expenditure as a result of seeking care
We looked at three primary outcomes ofaccessing surgical and anaesthesia care: the annualnumber of cases of catastrophic expenditure from OOPmedical costs, the annual number of cases of catastrophicexpenditure from OOP non-medical costs, and thenumber of people at risk of catastrophic expenditureshould they need surgical and anaesthesia care. Fullmethods can be found in the accompanying paper.2
assess the catastrophic costs
Med
consent for surgery procedures and use of the case information for research
26.
parents' education and occupation
ich factors limit the patient’s accessto surgical care? (Select all that appl
limitations: cost, distance/time, cultural/religion, vs medical treatment unavailability, lack of trust?
9.
daily function limiatations: school, education, employment, income earned because of defects
id the mother smokeduring pregnancy? ` `16. Was the mother exposed tosecondhan
looking at exposure to higher risks of anomalies and folic acid uptake
o limit our re-view to simple and complex syndactyly and excludedcomplicated cases.
excluded --> need to evaluate webcreep in this case too
ds straight lines to reduce the potentialfor contracture or deviation.
can say tat other other compkications have ben agreed to use zig-zag, lack of info on webcreep recurrence
does notsupport recommendations in favour of any particularsurgical technique
did not identify any particular techniques that could reduce webcreep complications
) Reoperation was a commonmarker (21 papers) of web creep recurrence in this lit-erature series. However, the clinical criteria on which theindication for further surgery was based were not alwaysclearly described. Two different approaches to the as-sessment of web creep included x-ray monitoring by Ve-kris et al.49) and clinical photography by Niranjan et al.2
indication for operation and consistent of webcreep is not outlined and inconsistent
CIBERSORTx
?
feature extraction algorithm (24)
??
patial multiomics,combining spatial transcriptomics with paired scRNA-seq andscATAC-seq datasets
?
single-cell RNA and ATAC sequencing (scRNA-seq andscATAC-seq)
?
repairkinetics and multiple Rainbow transgenic lines t
?
. Repeating these experiments using porcine cells and scRNA-seq
scRNA is so sensitive
fate probability estimates with a pseudotemporalordering along latent tim
wanna learn this
transcriptionally distinct cell lineage
so the selection is not manual anymore?
information with transcriptomic similarity tocompute a global map of cellular fate potentials uncovering initialand terminal cell states
wanna learn this
RNA velocityanalysis using scVelo and CellRank
??
Genetrail3, a
for proteomics and gene oncology analysis?
posi-tional cloning
?
conditionalknockout techniques
?
ELEX-Seq
?
in situhybridization for Esrp1 (F
western and in-situ hydrization targets more protein level rather than scRNA
Comparison of the predicted ΔPSI as measured by rMATS and theΔPSI determined by semi quantitative RT-PCR revealed a high correlation between these twomeasurements in WT and DKO samples
would like to learn more about rMATs, would it be applicable to other projects or just the exon one?
We generated over 560 million paired sequencing reads in total from 2–3 biologicalreplicates from each genetic group which uniquely mapped to over 440 million mapped pairs. Eachgenetic group was represented by at least 70 million unique paired sequencing reads mapped to themouse mm10 genome at ∼70–85% mapping rate
??
rand-specific polyA-selected mRNA sequencing libraries and the multiplexed libraries were sequencedtogether on a single flow cell across 2 lanes with an Illumina HiSeq 2000 (
scRNA collection
ariable functional redundancy
by testing different genes response under different combination of esrp mutants
Alizarin Red and Alcian Blue bone and cartilage stains
?
We confirmed the expected Mendelian transmission rates of the Esrp1 and Esrp2KO alleles in these crosses, indicating there was no early embryonic lethality associated with loss of theEsrps
how
Knockout Mouse Project (KOMP)
wats available and wt not
splicing sensitive microarrays
?
d Esrp2
what about only missing esrp2 ?