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Apr 2024
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Lysosomal dysfunction by inactivation of V-ATPase drives innate immune response in C. elegans

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GPATCH8 modulates mutant SF3B1 mis-splicing and pathogenicity in hematologic malignancies

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WW domains form a folded type of nuclear localization signal to guide YAP1 nuclear import

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rupress.org/jcb/article/223/6/e202308013/276631/WW-domains-form-a-folded-type-of-nuclear
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Alanyl-tRNA synthetase, AARS1, is a lactate sensor and lactyltransferase that lactylates p53 and contributes to tumorigenesis

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sciencedirect.com/science/article/pii/S0092867424003970
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Protocol to detect OLA1 polyubiquitination by Aurora A in vivo and in vitro

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sciencedirect.com/science/article/pii/S2666166724001734
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Nuclear RNA homeostasis promotes systems-level coordination of cell fate and senescence

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  DOI: 10.1016/j.stem.2024.03.015
  
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cell.com/cell-stem-cell/fulltext/S1934-5909(24)00096-1
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The BLM-TOP3A-RMI1-RMI2 proximity map reveals that RAD54L2 suppresses sister chromatid exchanges

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biorxiv.org/content/10.1101/2024.04.07.588476v1
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RAD51 separation of function mutation disables replication fork maintenance but preserves DSB repair

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ncbi.nlm.nih.gov/pmc/articles/PMC10993188/
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ISG12a promotes immunotherapy of HBV-associated hepatocellular carcinoma through blocking TRIM21/AKT/β-Catenin/PD-L1 axis

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ncbi.nlm.nih.gov/pmc/articles/PMC11000115/
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Human V-ATPase function is positively and negatively regulated by TLDc proteins

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sciencedirect.com/science/article/pii/S0969212624000911
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Genetic and pharmacological reduction of CDK14 mitigates synucleinopathy

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nature.com/articles/s41419-024-06534-8
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GCN5 mediates DNA-PKcs crotonylation for DNA double-strand break repair and determining cancer radiosensitivity

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  DOI: 10.1038/s41416-024-02636-4
  
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Mar 2024
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Brucella-driven host N-glycome remodeling controls infection

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The splicing regulators RBM5 and RBM10 are subunits of the U2 snRNP engaged with intron branch sites on chromatin

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Evolution of chromosome-arm aberrations in breast cancer through genetic network rewiring

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RPGR is a guanine nucleotide exchange factor for the small GTPase RAB37 required for retinal function via autophagy regulation

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Local mitochondrial replication in the periphery of neurons requires the eEF1A1 protein and thetranslation of nuclear-encoded proteins

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ncbi.nlm.nih.gov/pmc/articles/PMC10951640/
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The winged helix domain of MORF binds CpG islands and the TAZ2 domain of p300

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ncbi.nlm.nih.gov/pmc/articles/PMC10946326/
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Hypoxia-inducible factor 1 recruits FACT and RNF20/40 to mediate histone ubiquitination and transcriptional activation of target genes

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The Cby3/ciBAR1 complex positions the annulus along the sperm flagellum during spermiogenesis

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rupress.org/jcb/article/223/3/e202307147/276492/The-Cby3-ciBAR1-complex-positions-the-annulus
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Rab32 family proteins regulate autophagosomal components recycling

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rupress.org/jcb/article/223/3/e202306040/276549/Rab32-family-proteins-regulate-autophagosomal
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Regulation of hippocampal mossy fiber-CA3 synapse function by a Bcl11b/C1ql2/Nrxn3(25b+) pathway

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ncbi.nlm.nih.gov/pmc/articles/PMC10942602/
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The acetylase activity of Cdu1 regulates bacterial exit from infected cells by protecting Chlamydia effectors from degradation

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Long noncoding RNA Malat1 protects against osteoporosis and bone metastasis

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  DOI: 10.1038/s41467-024-46602-3
  
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Identification of a new export signal that targets early subunits to the flagellar type III secretion export machinery

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ncbi.nlm.nih.gov/pmc/articles/PMC10936197/
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Functional BRI2-TREM2 interactions in microglia: implications for Alzheimer's and related dementias

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ncbi.nlm.nih.gov/pmc/articles/PMC10933458/
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IκBζ is a dual-use coactivator of NF-κB and POU transcription factors

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Bactericidal/permeability-increasing protein instructs dendritic cells to elicit Th22 cell response

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A sterol analog inhibits hedgehog pathway by blocking cholesterylation of smoothened

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Feb 2024
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A di-acetyl-decorated chromatin signature couples liquid condensation to suppress DNA end synapsis

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Oligoadenylate synthetase 1 displays dual antiviral mechanisms in driving translational shutdown and protecting interferon production

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UFL1 ablation in T cells suppresses PD-1 UFMylation to enhance anti-tumor immunity

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Molecular mechanism of S-adenosylmethionine sensing by SAMTOR in mTORC1 signaling

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PCID2 dysregulates transcription and viral RNA processing to promote HIV-1 latency

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EHBP1 is critically involved in dendritic arbor formation and is coupled to factors promoting actin filament formation

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Serine/arginine-rich splicing factor 7 promotes the type I interferon response by activating Irf7 transcription

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SEPN1-related myopathy depends on the oxidoreductase ERO1A and is druggable with the chemical chaperone TUDCA

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A single amino acid in the Salmonella effector SarA/SteE triggers supraphysiological activation of STAT3 for anti-inflammatory target gene expression

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Denaturing purifications demonstrate that PRC2 and other widely reported chromatin proteins do not appear to bind directly to RNA in vivo

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A metabolically controlled contact site between vacuoles and lipid droplets in yeast

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Functional BRI2-TREM2 interactions in microglia: implications for Alzheimer’s and related dementias

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Machine learning-based prediction models to guide the selection of Cas9 variants for efficient gene editing

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Specialized replication mechanisms maintain genome stability at human centromeres

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C19ORF84 connects piRNA and DNA methylation machineries to defend the mammalian germ line

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Role of paraoxonase 3 in regulating ENaC-mediated Na+ transport in the distal nephron

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ABHD7-mediated depalmitoylation of lamin A promotes myoblast differentiation

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Calcium-binding protein 7 expressed in muscle negatively regulates age-related degeneration of neuromuscular junctions in mice

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Acetylation-induced proteasomal degradation of the activated glucocorticoid receptor limits hormonal signaling

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Nox4-SH3YL1 complex is involved in diabetic nephropathy

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Nuclear pore complex proteins are involved in centromere distribution

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p53 promotes antiviral innate immunity by driving hexosamine metabolism

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PHLDA2-mediated phosphatidic acid peroxidation triggers a distinct ferroptotic response during tumor suppression

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DPCD is a regulator of R2TP in ciliogenesis initiation through Akt signaling

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H2A.Z histone variants facilitate HDACi-dependent removal of H3.3K27M mutant protein in pediatric high-grade glioma cells

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HSP70 binds to specific non-coding RNA and regulates human RNA polymerase III

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JNEUROSCI.0236-23.2023.full-html.html

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Growth-suppressor microRNAs mediate synaptic overgrowth and behavioral deficits in Fragile X mental retardation protein deficiency

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Live-cell imaging defines a threshold in CDK activity at the G2/M transition

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TALK-1-mediated alterations of β-cell mitochondrial function and insulin secretion impair glucose homeostasis on a diabetogenic diet

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SARS-CoV-2 NSP14 MTase activity is critical for inducing canonical NF-κB activation

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Rapamycin-sensitive mechanisms confine the growth of fission yeast below the temperatures detrimental to cell physiology

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Biosynthesis of chlorophyll c in a dinoflagellate and heterologous production in planta

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ABCG2 is an itaconate exporter that limits antibacterial innate immunity by alleviating TFEB-dependent lysosomal biogenesis

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Dynamic palmitoylation of STX11 controls injury-induced fatty acid uptake to promote muscle regeneration

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Oligodendrocyte-derived LGI3 and its receptor ADAM23 organize juxtaparanodal Kv1 channel clustering for short-term synaptic plasticity

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Metabolic switch regulates lineage plasticity and induces synthetic lethality in triple-negative breast cancer

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Genetic insights into carbohydrate sulfotransferase 8 and its impact on the immunotherapy efficacy of cancer

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A membrane-sensing mechanism links lipid metabolism to protein degradation at the nuclear envelope

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Proteogenomic characterization of small cell lung cancer identifies biological insights and subtype-specific therapeutic strategies

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ULK phosphorylation of STX17 controls autophagosome maturation via FLNA

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Loss-of-function cancer-linked mutations in the EIF4G2 non-canonical translation initiation factor

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Decoupling NAD+ metabolic dependency in chondrosarcoma by targeting the SIRT1-HIF-2α axis

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In vivo characterization of a podocyte-expressed short podocin isoform

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Adaptation to constant light requires Fic-mediated AMPylation of BiP to protect against reversible photoreceptor degeneration

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The tetrapeptide sequence of IL-18 and IL-1β regulates their recruitment and activation by inflammatory caspases

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An enzyme that selectively S-nitrosylates proteins to regulate insulin signaling

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SRSF2 plays an unexpected role as reader of m5C on mRNA, linking epitranscriptomics to cancer

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MeCP2 represses the activity of topoisomerase IIβ in long neuronal genes

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Reprogramming of tumor-associated macrophages via NEDD4-mediated CSF1R degradation by targeting USP18

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Smad4 sequestered in SFPQ condensates prevents TGF-β tumor-suppressive signaling

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IDR-targeting compounds suppress HPV genome replication via disruption of phospho-BRD4 association with DNA damage response factors

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Cyclophilin A facilitates influenza B virus replication by stabilizing viral proteins

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Broad receptor tropism and immunogenicity of a clade 3 sarbecovirus

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OsHLP1 is an endoplasmic-reticulum-phagy receptor in rice plants

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The γ-secretase substrate proteome and its role in cell signaling regulation

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p120 RasGAP and ZO-2 are essential for Hippo signaling and tumor-suppressor function mediated by p190A RhoGAP

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Brain metastasis-associated fibroblasts secrete fucosylated PVR/CD155 that induces breast cancer invasion

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SARS-CoV-2 ORF6 protein targets TRIM25 for proteasomal degradation to diminish K63-linked RIG-I ubiquitination and type-I interferon induction

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Transcription factor NFYa controls cardiomyocyte metabolism and proliferation during mouse fetal heart development

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PTIR1 acts as an isoform of DDX58 and promotes tumor immune resistance through activation of UCHL5

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RNA polymerase II dynamics and mRNA stability feedback scale mRNA amounts with cell size

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SARS-CoV-2 hijacks a cell damage response, which induces transcription of a more efficient Spike S-acyltransferase

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Integrative multi-omic profiling of adult mouse brain endothelial cells and potential implications in Alzheimer’s disease

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LPGAT1 controls MEGDEL syndrome by coupling phosphatidylglycerol remodeling with mitochondrial transport

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SIRT2 negatively regulates the cGAS-STING pathway by deacetylating G3BP1

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Mycobacterium tuberculosis suppresses host DNA repair to boost its intracellular survival

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Membrane remodeling properties of the Parkinson’s disease protein LRRK2

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PD-L1-mediated immune evasion in triple-negative breast cancer is linked to the loss of ZNF652

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Unbiased discovery of natural sequence variants that influence fungal virulence

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ZNF692 organizes a hub specialized in 40S ribosomal subunit maturation enhancing translation in rapidly proliferating cells

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Nuclear import carrier Hikeshi cooperates with HSP70 to promote murine oligodendrocyte differentiation and CNS myelination

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dgad627-html.html

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Redox-dependent internalization of the purinergic P2Y6 receptor limits colitis progression

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TERRA R-loops connect and protect sister telomeres in mitosis

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SND1 binds SARS-CoV-2 negative-sense RNA and promotes viral RNA synthesis through NSP9

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Splicing quality control mediated by DHX15 and its G-patch activator SUGP1

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Mitochondrial DNA breaks activate an integrated stress response to reestablish homeostasis

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BRI2-mediated regulation of TREM2 processing in microglia and its potential implications for Alzheimer’s disease and related dementias

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Typhoid toxin hijacks Wnt5a to establish host senescence and Salmonella infection

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Targeting LYPLAL1-mediated cGAS depalmitoylation enhances the response to anti-tumor immunotherapy

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Schlafen-5 inhibits LINE-1 retrotransposition

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bvad126-html.html

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TET3 plays a critical role in white adipose development and diet-induced remodeling

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SREBP-1 upregulates lipophagy to maintain cholesterol homeostasis in brain tumor cells

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Iron acquisition by a commensal bacterium modifies host nutritional immunity during Salmonella infection

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PUF60 promotes cell cycle and lung cancer progression by regulating alternative splicing of CDC25C

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A gut meta-interactome map reveals modulation of human immunity by microbiome effectors

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Splicing regulation of GFPT1 muscle-specific isoform and its roles in glucose metabolisms and neuromuscular junction

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Glutamate transporter contribution to retinal ganglion cell vulnerability in a rat model of multiple sclerosis

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Two domains of Tim50 coordinate translocation of proteins across the two mitochondrial membranes

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TET2-mediated mRNA demethylation regulates leukemia stem cell homing and self-renewal

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The C2 domain of calpain 5 contributes to enzyme activation and membrane localization

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Dynamic association of the intramembrane proteases SPPL2a/b and their substrates with tetraspanin-enriched microdomains

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CCDC50 promotes tumor growth through regulation of lysosome homeostasis

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Regulation of Rim4 distribution, function, and stability during meiosis by PKA, Cdc14, and 14-3-3 proteins

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Autophagy-mediated surveillance of Rim4-mRNA interaction safeguards programmed meiotic translation

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Activation of AKT induces EZH2-mediated β-catenin trimethylation in colorectal cancer

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Identification of Selective ATP-Competitive CMG Helicase Inhibitors for Cancer Intervention that Disrupt CMG-Replisome Function

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Srd5a1 is Differentially Regulated and Methylated During Prepubertal Development in the Ovary and Hypothalamus

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Presynapses contain distinct actin nanostructures

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  DOI: 10.1083/jcb.202208110
  
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Loss-of-function cancer-associated mutations in the EIF4G2 non-canonical translation initiation factor

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NLRP11 is a pattern recognition receptor for bacterial lipopolysaccharide in the cytosol of human macrophages

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Optogenetic manipulation of Gq- and Gi/o-coupled receptor signaling in neurons and heart muscle cells

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Optogenetic manipulation of neuronal and cardiomyocyte functions in zebrafish using microbial rhodopsins and adenylyl cyclases

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The Hippo pathway noncanonically drives autophagy and cell survival in response to energy stress

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A Noelin-organized extracellular network of proteins required for constitutive and context-dependent anchoring of AMPA-receptors

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End-binding protein 1 promotes specific motor-cargo association in the cell body prior to axonal delivery of dense core vesicles

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PROTAC targeting cyclophilin A controls virus-induced cytokine storm

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ATF7IP2, a meiosis-specific partner of SETDB1, is required for proper chromosome remodeling and crossover formation during spermatogenesis

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A peroxiredoxin-P38 MAPK scaffold increases MAPK activity by MAP3K-independent mechanisms

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Golgi-dependent reactivation and regeneration of Drosophila quiescent neural stem cells

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ArfGAP1 regulates the endosomal sorting of guidance receptors to promote directed collective cell migration in vivo

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A membrane-associated MHC-I inhibitory axis for cancer immune evasion

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can-22-4017-html.html

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C1orf112 teams up with FIGNL1 to facilitate RAD51 filament disassembly and DNA interstrand cross-link repair

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FRMD8 targets both CDK4 activation and RB degradation to suppress colon cancer growth

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CTCF and R-loops are boundaries of cohesin-mediated DNA looping

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Tissue tension permits β-catenin phosphorylation to drive mesoderm specification in human embryonic stem cells

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Aurora A polyubiquitinates the BRCA1-interacting protein OLA1 to promote centrosome maturation

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A p53/LINC00324 positive feedback loop suppresses tumor growth by counteracting SET-mediated transcriptional repression

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PGAM5 is an MFN2 phosphatase that plays an essential role in the regulation of mitochondrial dynamics

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Mechanism of orphan subunit recognition during assembly quality control

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Scorpionfish BPI is highly active against multiple drug-resistant Pseudomonas aeruginosa isolates from people with cystic fibrosis

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DENND2B activates Rab35 at the intercellular bridge, regulating cytokinetic abscission and tetraploidy

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Regulation of VKORC1L1 is critical for p53-mediated tumor suppression through vitamin K metabolism

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Loss of SYNCRIP unleashes APOBEC-driven mutagenesis, tumor heterogeneity, and AR-targeted therapy resistance in prostate cancer

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British J Pharmacology - 2023 - Cheng - Pharmacological targeting of Axin2 suppresses cell growth and metastasis in-html.html

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Complexes of vertebrate TMC1/2 and CIB2/3 proteins form hair-cell mechanotransduction cation channels

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STAT3 regulates antiviral immunity by suppressing excessive interferon signaling

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Marchf6 E3 ubiquitin ligase critically regulates endoplasmic reticulum stress, ferroptosis, and metabolic homeostasis in POMC neurons

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The oxidative folding of nascent polypeptides provides electrons for reductive reactions in the ER

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A dual, catalytic role for the fission yeast Ccr4-Not complex in gene silencing and heterochromatin spreading

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Transcription factors interact with RNA to regulate genes

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Tet2 acts in the lateral habenula to regulate social preference in mice

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Subfunctionalized expression drives evolutionary retention of ribosomal protein paralogs Rps27 and Rps27l in vertebrates

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Redox states in the endoplasmic reticulum directly regulate the activity of calcium channel, inositol 1,4,5-trisphosphate receptors

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Lysosomal LAMP proteins regulate lysosomal pH by direct inhibition of the TMEM175 channel

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Delineation of functional subdomains of Huntingtin protein and their interaction with HAP40

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Identification of XAF1 as an endogenous AKT inhibitor

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The OsbHLH002/OsICE1-OSH1 module orchestrates secondary cell wall formation in rice

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QKI shuttles internal m7G-modified transcripts into stress granules and modulates mRNA metabolism

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Peptide-mediated inhibition of the transcriptional regulator Elongin BC induces apoptosis in cancer cells

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“Disruption of Golgi markers by two RILP-directed shRNAs in neurons: a new role for RILP or a neuron-specific off-target phenotype?”

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Polycomb repressive complex 2 binds and stabilizes NANOG to suppress differentiation-related genes to promote self-renewal

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ROTACs leverage signaling-incompetent R-spondin for targeted protein degradation

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A restrictor complex of ZC3H4, WDR82, and ARS2 integrates with PNUTS to control unproductive transcription

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ARS2 instructs early transcription termination-coupled RNA decay by recruiting ZC3H4 to nascent transcripts

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Belly roll, a GPI-anchored Ly6 protein, regulates Drosophila melanogaster escape behaviors by modulating the excitability of nociceptive peptidergic interneurons

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Circular RNAs drive oncogenic chromosomal translocations within the MLL recombinome in leukemia

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Mechanism of ribosome-associated mRNA degradation during tubulin autoregulation

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