Genotype-phenotype correlations of 573 VHL patients from 200 kindreds were analyzed and confirmed that higher risk of pheochromocytoma is associated with missense mutations that result in substitution of a surface amino acid or that disrupt the structural integrity of the VHL gene product (pVHL). Age-related risks of retinal hemangoblastomas and renal cell carcinoma were higher in patients with nonsense or frameshift mutations. Southern blot and/or MLPA analysis by whole blood detected this nonsense mutation. c.529A>T was found in 3 VHL families total. 2 families were grouped and detailed as affected with a total of 10 patients, 8 with retinal angioma, 4 with cerebellar hemangioblastoma, 1 with renal cell carcinoma (diagnosed at 50Y), and 1 with pheochromocytoma (diagnosed at 27Y). Another individual belonging to a separate family was written with the same nonsense mutation and retinal angiomas diagnosed at 28Y, cerebellar hemangioblastomas diagnosed at 22Y, and renal cell carcinoma diagnosed at 37Y.
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GroupID: 35
DiseaseAssertion: assumed VHL
GroupSize: 10
GroupNumberMales: N/A
GroupNumberFemales: N/A
GroupEthnicity: N/A
GroupAgeRange: N/A
GroupInfo: 10 of the 573 patients discussed in this paper were found to have the following mutation belonging to 2 families altogether.
GroupPresentingHPOs: HP:0006880; HP:0009711; HP:0005584; HP:0002666 (cerebellar hemangioblastoma, retinal capillary hemangioma; renal cell carcinoma; pheochromocytoma)
GroupHPOFreeText: 8 patients had retinal angiomas diagnosed at a mean age of 27Y, 4 had cerebellar hemangioblastomas diagnosed at a mean age of 31Y, 1 member had RCC diagnosed at 50Y, and one has pheochromocytoma diagnosed at 27Y.
GroupNotHPOs: N/A
GroupNotHPOFreeText: N/A
GroupPreviousTesting: N/A
PreviouslyPublished: N/A
SupplementalData: Supplementary Table S1.
Variant: p.R177* (c.529A>T)
CaseProblemVariantFreeText: N/A
LegacyVariant: N/A
ClinVarID: 625258 https://www.ncbi.nlm.nih.gov/clinvar/variation/625258/
CAID: N/A
gnomAD: N/A
VariantEvidence: N/A
MutationType: stop_gained
CivicName: R177* (c.529A>T)
MultipleGeneVariants: N/A
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GroupID: 8
Case: 37Y0M, Sex Unknown, Ethnicity Unknown
DiseaseAssertion: assumed VHL
FamilyInfo: 1 of the 573 patients discussed in this paper were found to have this variant. This mutation was found in 1 VHL family with a single patient.
CasePresentingHPOs: HP:0005584; HP:0009711; HP:0006880 (renal cell carcinoma; retinal capillary hemangioma; cerebellar hemangioblastoma)
CaseHPOFreeText: patient had retinal angiomas diagnosed at 28Y, cerebellar hemangioblastomas diagnosed at 22Y, and renal cell carcinoma diagnosed at 37Y.
CaseNotHPOs: HP:0002666 (pheochromocytoma)
CaseNotHPOFreeText: N/A
CasePreviousTesting: N/A
PreviouslyPublished: N/A
SupplementalData: Supplementary Table S1.
Variant: p.R177* (c.529A>T)
CaseProblemVariantFreeText: N/A
LegacyVariant: N/A
ClinVarID: 625258 https://www.ncbi.nlm.nih.gov/clinvar/variation/625258/
CAID: N/A
gnomAD: N/A
VariantEvidence: N/A
MutationType: stop_gained
CivicName: R177* (c.529A>T)
MultipleGeneVariants: N/A
Tags
- ClinVarID:625258
- ClinVarID:Yes
- AgeOfPresentation:renalcellcarcinoma:50
- AminoAcidChange:ARGtoTER
- EvidenceStatement
- DiseaseEntity:cerebellarhemangioblastoma
- VHL Hypothesis Annotation
- DiseaseEntity:renalcellcarcinoma
- ProteinPosition:177
- MutationType:stop_gained
- ExperimentalAssay
- AgeOfPresentation:pheochromocytoma:27
- RefSeq:NM_000551.2
- DiseaseEntity:VHL
- NoFamilyInfo
- DiseaseEntity:pheochromocytoma
- InheritancePattern:AutosomalDominant
- Familial
- DiseaseEntity:renaltransitionalcellcarcinoma
- inferred_gene_source:ClinVar
- Mutation:Germline
- AgeOfPresentation:retinalcapillaryhemangioma:28
- AgeOfPresentation:renalcellcarcinoma:37
- CivicName:R177*(c.529A>T)
- cDNAposition:529
- DiseaseEntity:retinalcapillaryhemangioma
- SupplementalData
- AgeOfPresentation:cerebellarhemangioblastoma:22
- inferred_gene_hgnc:12687
Annotators
URL
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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VHL kindreds for germline mutations and calculated the age related tumour risks for different classes of VHL gene mutations.
PatientID: None
KindredID: 36
Case: Age, sex ethnicity unknown
DiseaseAssertion: unknown; paper focused only on pheochromocytoma
FamilyInfo: No specific family info was present; although this was recorded as a family germline mutation belonging to Family ID 36
CasePresentingHPOs: N/A
CaseHPOFreeText: Unknown
CaseNotHPOs: HP:0002666 (pheochromocytoma)
CaseNotHPOFreeText: No presence of phaeochromocytoma in family
CasePreviousTesting: N/A
PreviouslyPublished: N/A
SupplementalData: N/A
Variant: p.R177* (c.529A>T)
CaseProblemVariantFreeText: N/A
LegacyVariant: p.R177* (c.742A>T)
ClinVarID: 625258 https://www.ncbi.nlm.nih.gov/clinvar/variation/625258/
CAID: N/A
gnomAD: N/A
VariantEvidence: N/A
MutationType: stop_gained
CivicName: R177* (c.529A>T)
MultipleGeneVariants: N/A
Tags
- inferred_gene_source:ClinVar
- ClinVarID:625258
- VHL Hypothesis Annotation
- Mutation:Germline
- RefSeq:AF010238.1
- cDNAposition:529
- CivicName:R177*(c.529A>T)
- ProteinPosition:177
- ClinVarID:Yes
- MutationType:stop_gained
- AminoAcidChange:ARGtoTER
- InheritancePattern:AutosomalDominant
- DiseaseEntity:asymptomatic
- Familial
- inferred_gene_hgnc:12687
Annotators
URL
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pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
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PMID: 7977367
Tissue analysis from 61 VHL patients, 30 sporadic renal cell carcinoma (RCC) tumor samples, and 6 sporadic RCC cell lines revealed 22 variants within VHL patients, 10 variants in tumor samples and variants in all cell lines. All mutations cluster to the 3’ end of the VHL gene open reading frame, implicating this region as important for the tumor-suppressor function of the VHL protein. RT-PCR analysis in RCC cell lines found a p.R177* (c.529A>T) mutation, stated in the paper as c.742A>T due to an older transcript. It was seen in cell line Caki-2. Any family information or other manifestations apart from RCC were unclear.
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PMID: 7977367
PatientID: N/A
KindredID: Caki-2 (cell line)
Case: Sex Unknown, Age Unknown, Ethnicity Unknown
DiseaseAssertion: Renal cell carcinoma
FamilyInfo: N/A
CasePresentingHPOs: HP:0005584 (renal cell carcinoma)
CaseHPOFreeText: Described as sporadic RCC from cell line Caki-2
CaseNotHPOs: N/A
CaseNotHPOFreeText: N/A
CasePreviousTesting: N/A
PreviouslyPublished: N/A
SupplementalData: N/A
Variant: p.R177* (c.529A>T)
LegacyVariant: p.R248* (c.742A>T)
CaseProblemVariantFreeText: N/A
ClinVarID: 625258 https://www.ncbi.nlm.nih.gov/clinvar/variation/625258/
CAID: N/A
gnomAD: N/A
VariantEvidence:N/A
MutationType: stop_gained
CivicName: R177* (c.529A>T)
MultipleGeneVariants: N/A
Tags
- ClinVarID:625258
- ClinVarID:Yes
- NoFamilyInfo
- AminoAcidChange:ARGtoTER
- InheritancePattern:AutosomalDominant
- EvidenceStatement
- inferred_gene_source:ClinVar
- VHL Hypothesis Annotation
- Mutation:Germline
- DiseaseEntity:renalcellcarcinoma
- ProteinPosition:177
- cDNAposition:529
- CivicName:R177*(c.529A>T)
- MutationType:stop_gained
- RefSeq:AF010238.1
- inferred_gene_hgnc:12687
Annotators
URL
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