194 Matching Annotations
  1. May 2018
    1. Before reproducibility must come preproducibility

      This article touches on many components of the repronim project.

  2. Feb 2018
    1. Workshop Details August 20 – September 4, 2016 Friday Harbor Laboratories

      Summer Workshop on the Dynamic Brain; August 18 – September 2, 2018; Friday Harbor, WA

    1. empowering users to make local changes.

      Local changes are great for customizability, but, it can play some havoc with reliability and reproducibility. 'ReproNim' recommends making such custom changes under the control of a version management system (ie. GitHub) so that the user can document an exact version of analysis used.

  3. Jan 2018
  4. Nov 2017
  5. Oct 2017
  6. Sep 2017
  7. Aug 2017
  8. Jun 2017
  9. May 2017
    1. Containerization technology takes the hassle out of setting up software and can boost the reproducibility of data-driven research.
  10. Apr 2017
  11. Mar 2017
  12. Feb 2017
  13. Jan 2017
    1. Replication studies offer much more than technical details

      Another editorial highlighting that highlights the merits of replication beyond repeat and raises questions about the culture of science and confirmation bias.

  14. Dec 2016
  15. Nov 2016
    1. Data on the Web Best Practices

      A description for different qualities and targets for data sharing or publishing.

    1. Bioinformatics is a disorganised disaster and I am too. So I made a shell.

      This is a shell-wrapper to minimize the effort needed to collect command line provenance.

      This post covers a lot of ground to describe practical and human requirements.

    1. - In this paper, we have

      Is something missing here?

    2. “Effect size and confidence interval”.

      Hypothes.is has direct linking, so you could technically embed a link to the relevant section.

  16. Oct 2016
    1. Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct research.

      Training for data skills

  17. Sep 2016
  18. Aug 2016
    1. Lesson template for Neurohackweek

      A GitHub template for creating lesson plans. While this doesn't provide the flexibility of a computational environment within this lesson plan, it serves as a good approach to outline concepts of lessons.

    1. replication ecosystem, such as it is, lacks visibility, value and conventions.

      a key social concern

    1. Welcome to Kaggle Datasets

      Kaggle now allows publish datasets. It will be interesting to investigate what kind of datasets are allowed and how it captures metadata.

    1. Smart & Simple Project Management

      another project management solution for GitHub and it appears to be free. i may replace zenhub with this.